Wall clock time and date at job start Mon Mar 30 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30329 * 125.96610 * 2 1 4 4 N 1.39869 * 109.25191 * 180.14339 * 3 2 1 5 5 C 1.40060 * 125.68813 * 179.81141 * 4 3 2 6 6 C 1.38875 * 120.06691 * 359.69164 * 5 4 3 7 7 C 1.38115 * 119.93062 * 179.97438 * 6 5 4 8 8 C 1.38295 * 120.06433 * 359.97438 * 7 6 5 9 9 C 1.38288 * 120.14429 * 0.02562 * 8 7 6 10 10 C 1.38106 * 120.06942 * 359.97438 * 9 8 7 11 11 C 1.34749 * 108.62936 * 359.54995 * 4 3 2 12 12 C 1.39288 * 107.15446 * 0.26163 * 11 4 3 13 13 C 1.41532 * 126.55725 * 180.02562 * 12 11 4 14 14 H 1.08003 * 120.00347 * 179.97438 * 13 12 11 15 15 C 1.39721 * 119.99723 * 359.96671 * 13 12 11 16 16 N 1.31010 * 120.00041 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99727 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47450 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.46853 * 120.00297 * 17 15 13 20 20 H 1.48499 * 109.47115 * 240.00503 * 17 15 13 21 21 H 1.09001 * 109.46535 * 270.35451 * 1 2 3 22 22 H 1.09006 * 109.46898 * 30.34915 * 1 2 3 23 23 H 1.08998 * 109.47420 * 150.35073 * 1 2 3 24 24 H 1.07997 * 120.03887 * 0.02562 * 6 5 4 25 25 H 1.07992 * 119.96664 * 179.72318 * 7 6 5 26 26 H 1.07995 * 119.92125 * 179.97438 * 8 7 6 27 27 H 1.07996 * 119.96132 * 180.02562 * 9 8 7 28 28 H 1.08005 * 120.03577 * 180.02562 * 10 9 8 29 29 H 1.07994 * 126.42182 * 180.26318 * 11 4 3 30 30 H 0.97007 * 119.99694 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2724 1.0548 0.0000 4 7 3.6120 0.6526 -0.0033 5 6 4.7217 1.5071 -0.0080 6 6 4.5397 2.8838 -0.0163 7 6 5.6360 3.7239 -0.0204 8 6 6.9139 3.1953 -0.0158 9 6 7.0985 1.8248 -0.0076 10 6 6.0064 0.9795 -0.0034 11 6 3.6571 -0.6941 0.0047 12 6 2.3407 -1.1492 0.0070 13 6 1.9154 -2.4991 0.0153 14 1 0.8610 -2.7332 0.0168 15 6 2.8596 -3.5290 0.0215 16 7 4.1386 -3.2451 0.0201 17 14 2.2983 -5.3106 0.0318 18 1 0.8142 -5.3621 0.0312 19 1 2.8176 -6.0001 -1.1765 20 1 2.8169 -5.9860 1.2485 21 1 -0.3632 0.0064 1.0277 22 1 -0.3633 0.8869 -0.5193 23 1 -0.3634 -0.8931 -0.5084 24 1 3.5420 3.2973 -0.0186 25 1 5.4951 4.7945 -0.0313 26 1 7.7695 3.8543 -0.0194 27 1 8.0978 1.4152 -0.0036 28 1 6.1512 -0.0908 0.0034 29 1 4.5470 -1.3059 0.0085 30 1 4.7941 -3.9601 0.0248 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000221866489.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:07 Heat of formation + Delta-G solvation = 73.685158 kcal Electronic energy + Delta-G solvation = -14821.400053 eV Core-core repulsion = 12389.075989 eV Total energy + Delta-G solvation = -2432.324064 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.75072 -39.65053 -35.60450 -34.52838 -31.97279 -31.18781 -30.70772 -28.24486 -26.86166 -23.65639 -23.23882 -21.38189 -20.13473 -19.20995 -18.15834 -17.01023 -16.25047 -15.88561 -15.67684 -15.37649 -14.57411 -14.39187 -14.28043 -14.10919 -13.73352 -13.36620 -13.15624 -12.91046 -12.72308 -12.40508 -12.19859 -11.92663 -11.76333 -11.33981 -10.95711 -10.66763 -9.92093 -9.42079 -8.80423 -8.43922 -6.11410 0.12726 0.44081 1.37591 1.43571 1.58342 1.62356 1.97327 2.20911 2.32114 2.96211 3.45130 3.83476 4.05678 4.16864 4.30186 4.43807 4.53999 4.59815 4.72413 4.89502 4.98351 5.02292 5.15827 5.21696 5.40585 5.49935 5.59174 5.67394 5.75804 5.90901 6.02461 6.41565 6.84840 7.00382 7.04668 7.31708 8.57584 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.032090 B = 0.007783 C = 0.006285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.326056 B = 3596.683609 C = 4453.863800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 C 0.023 3.977 3 N -0.339 5.339 4 N -0.345 5.345 5 C 0.157 3.843 6 C -0.164 4.164 7 C -0.087 4.087 8 C -0.147 4.147 9 C -0.084 4.084 10 C -0.177 4.177 11 C -0.096 4.096 12 C -0.069 4.069 13 C -0.448 4.448 14 H 0.083 0.917 15 C 0.008 3.992 16 N -0.864 5.864 17 Si 0.993 3.007 18 H -0.256 1.256 19 H -0.273 1.273 20 H -0.273 1.273 21 H 0.079 0.921 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.118 0.882 25 H 0.159 0.841 26 H 0.164 0.836 27 H 0.156 0.844 28 H 0.112 0.888 29 H 0.186 0.814 30 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.518 6.802 -0.038 7.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.146 4.146 3 N -0.160 5.160 4 N -0.124 5.124 5 C 0.062 3.938 6 C -0.185 4.185 7 C -0.105 4.105 8 C -0.165 4.165 9 C -0.102 4.102 10 C -0.198 4.198 11 C -0.233 4.233 12 C -0.077 4.077 13 C -0.481 4.481 14 H 0.101 0.899 15 C -0.199 4.199 16 N -0.495 5.495 17 Si 0.815 3.185 18 H -0.179 1.179 19 H -0.199 1.199 20 H -0.199 1.199 21 H 0.098 0.902 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.136 0.864 25 H 0.176 0.824 26 H 0.181 0.819 27 H 0.173 0.827 28 H 0.130 0.870 29 H 0.202 0.798 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.736 7.873 -0.041 8.714 hybrid contribution -0.158 -1.950 0.019 1.956 sum 3.578 5.923 -0.022 6.920 Atomic orbital electron populations 1.20038 0.84729 1.03061 1.02928 1.23334 0.98080 0.90866 1.02293 1.76288 0.87347 1.24803 1.27565 1.45313 1.03098 1.05043 1.58963 1.18173 0.85008 0.90550 1.00101 1.20928 1.00824 0.90652 1.06104 1.21350 0.91439 1.00552 0.97148 1.21499 0.97882 0.94978 1.02168 1.21278 0.98107 0.93725 0.97133 1.20990 0.90996 1.00750 1.07108 1.23845 1.01401 0.81509 1.16583 1.18602 0.90481 0.94340 1.04306 1.19175 0.94595 0.89248 1.45121 0.89914 1.26595 0.94401 1.05540 0.93333 1.69545 1.02447 1.35251 1.42304 0.84956 0.79490 0.75883 0.78130 1.17895 1.19858 1.19856 0.90249 0.90549 0.90245 0.86403 0.82380 0.81880 0.82654 0.87037 0.79752 0.91054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.87 10.24 71.24 0.73 -1.14 16 2 C 0.02 1.15 7.28 43.71 0.32 1.46 16 3 N -0.34 -17.57 11.73 -46.29 -0.54 -18.12 16 4 N -0.35 -18.13 3.77 -185.14 -0.70 -18.83 16 5 C 0.16 6.98 6.68 38.13 0.25 7.23 16 6 C -0.16 -6.15 9.65 22.39 0.22 -5.93 16 7 C -0.09 -2.37 10.04 22.25 0.22 -2.14 16 8 C -0.15 -3.55 10.04 22.30 0.22 -3.33 16 9 C -0.08 -2.40 10.04 22.25 0.22 -2.18 16 10 C -0.18 -6.91 9.44 22.39 0.21 -6.70 16 11 C -0.10 -5.43 9.76 84.50 0.82 -4.60 16 12 C -0.07 -3.90 5.94 -21.29 -0.13 -4.02 16 13 C -0.45 -24.59 9.15 23.44 0.21 -24.38 16 14 H 0.08 4.23 7.37 -2.91 -0.02 4.21 16 15 C 0.01 0.43 5.49 85.17 0.47 0.89 16 16 N -0.86 -46.77 10.33 21.79 0.23 -46.54 16 17 Si 0.99 39.93 29.56 68.60 2.03 41.96 16 18 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 21 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 22 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 23 H 0.08 2.89 7.61 -2.39 -0.02 2.87 16 24 H 0.12 4.57 7.68 -2.91 -0.02 4.54 16 25 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 26 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 27 H 0.16 3.34 8.06 -2.91 -0.02 3.31 16 28 H 0.11 4.69 6.71 -2.91 -0.02 4.67 16 29 H 0.19 10.75 4.70 -2.91 -0.01 10.73 16 30 H 0.28 13.78 8.30 -92.70 -0.77 13.01 16 Total: -1.00 -67.16 263.30 5.94 -61.22 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: 1.15 Total: 25.14 kcal Atomic # 6 Polarization: -48.62 SS G_CDS: 3.78 Total: -44.83 kcal Atomic # 7 Polarization: -82.47 SS G_CDS: -1.02 Total: -83.49 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -67.16 5.94 -61.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000221866489.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.906 kcal (2) G-P(sol) polarization free energy of solvation -67.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds