Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31022 * 1 3 3 Si 1.86798 * 120.00243 * 2 1 4 4 H 1.48503 * 109.47311 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46798 * 299.99877 * 3 2 1 6 6 H 1.48491 * 109.47307 * 59.99722 * 3 2 1 7 7 C 1.39880 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00183 * 179.97438 * 7 2 1 9 9 C 1.39820 * 119.99706 * 0.02562 * 7 2 1 10 10 C 1.40095 * 126.91650 * 0.02562 * 9 7 2 11 11 N 1.32056 * 108.10532 * 179.74189 * 10 9 7 12 12 C 1.33409 * 109.98231 * 0.24222 * 11 10 9 13 13 C 1.40343 * 131.76992 * 179.97438 * 12 11 10 14 14 C 1.36412 * 119.29260 * 179.97438 * 13 12 11 15 15 C 1.40489 * 120.04219 * 0.03463 * 14 13 12 16 16 C 1.35349 * 119.98699 * 359.97438 * 15 14 13 17 17 N 1.36696 * 120.20526 * 0.02562 * 16 15 14 18 18 C 1.51535 * 110.12005 * 179.97438 * 16 15 14 19 19 C 1.54369 * 105.06675 * 17.09842 * 18 16 15 20 20 C 1.51459 * 129.78643 * 179.97438 * 15 14 13 21 21 H 0.96999 * 120.00318 * 359.97438 * 1 2 3 22 22 H 1.08002 * 125.94918 * 0.02562 * 10 9 7 23 23 H 1.08005 * 120.35501 * 359.94705 * 13 12 11 24 24 H 1.07993 * 119.97682 * 180.02562 * 14 13 12 25 25 H 1.08998 * 110.32190 * 135.99898 * 18 16 15 26 26 H 1.08996 * 110.32254 * 258.10049 * 18 16 15 27 27 H 1.09001 * 110.93395 * 92.17708 * 19 18 16 28 28 H 1.09001 * 110.93200 * 215.81769 * 19 18 16 29 29 H 1.09002 * 110.32473 * 44.02979 * 20 15 14 30 30 H 1.09001 * 110.41603 * 281.86938 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3102 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 3.7043 1.3463 0.0006 5 1 1.8855 2.3963 -1.2126 6 1 1.8856 2.3964 1.2124 7 6 2.0096 -1.2114 0.0005 8 1 3.0896 -1.2114 0.0001 9 6 1.3105 -2.4222 0.0005 10 6 -0.0803 -2.5909 -0.0005 11 7 -0.3366 -3.8863 -0.0057 12 6 0.8049 -4.5769 -0.0029 13 6 1.0630 -5.9564 -0.0058 14 6 2.3551 -6.3937 -0.0022 15 6 3.4112 -5.4672 0.0050 16 6 3.1465 -4.1398 0.0079 17 7 1.8535 -3.6963 0.0043 18 6 4.4400 -3.3504 0.0163 19 6 5.5268 -4.3562 -0.4200 20 6 4.9073 -5.7029 0.0106 21 1 -0.4850 0.8400 0.0004 22 1 -0.8149 -1.7993 -0.0018 23 1 0.2473 -6.6643 -0.0103 24 1 2.5664 -7.4527 -0.0047 25 1 4.3834 -2.5235 -0.6915 26 1 4.6487 -2.9764 1.0185 27 1 5.6765 -4.3240 -1.4992 28 1 6.4628 -4.1711 0.1069 29 1 5.1699 -6.4856 -0.7011 30 1 5.2460 -5.9726 1.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238553558.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = 67.631772 kcal Electronic energy + Delta-G solvation = -15367.522519 eV Core-core repulsion = 12934.935960 eV Total energy + Delta-G solvation = -2432.586559 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.04517 -37.88784 -34.43258 -33.26055 -32.19469 -28.60595 -27.81181 -26.94589 -24.73020 -21.54738 -21.25614 -20.51546 -19.37958 -17.55956 -15.93754 -15.47244 -15.28040 -14.62654 -14.12748 -13.90633 -13.26938 -13.05842 -12.50165 -12.20822 -12.05701 -11.47199 -11.37381 -11.26671 -11.08028 -10.91060 -10.71760 -10.46922 -10.20825 -10.03725 -9.67808 -9.32112 -8.47075 -7.28673 -6.86483 -6.83202 -4.24675 1.90451 2.47952 2.99145 2.99505 3.04426 3.76001 4.05097 4.10259 4.86172 4.91186 4.98928 5.20012 5.26372 5.57383 5.70046 5.79338 5.97415 6.01864 6.07515 6.10782 6.17187 6.39056 6.43005 6.77427 6.90656 7.05379 7.19206 7.20931 7.46496 7.60205 7.92667 8.24288 8.61879 8.73035 8.85813 9.61332 10.12752 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.028054 B = 0.010484 C = 0.007700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.835807 B = 2670.125292 C = 3635.529770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.069 3.931 3 Si 0.930 3.070 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.430 4.430 8 H 0.080 0.920 9 C 0.153 3.847 10 C -0.063 4.063 11 N -0.477 5.477 12 C 0.095 3.905 13 C -0.049 4.049 14 C -0.156 4.156 15 C -0.164 4.164 16 C 0.096 3.904 17 N -0.392 5.392 18 C -0.074 4.074 19 C -0.117 4.117 20 C -0.060 4.060 21 H 0.283 0.717 22 H 0.198 0.802 23 H 0.127 0.873 24 H 0.114 0.886 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.823 -3.637 -0.130 9.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C -0.148 4.148 3 Si 0.754 3.246 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.197 1.197 7 C -0.465 4.465 8 H 0.098 0.902 9 C 0.042 3.958 10 C -0.218 4.218 11 N -0.196 5.196 12 C -0.138 4.138 13 C -0.069 4.069 14 C -0.179 4.179 15 C -0.169 4.169 16 C -0.008 4.008 17 N -0.073 5.073 18 C -0.112 4.112 19 C -0.155 4.155 20 C -0.098 4.098 21 H 0.094 0.906 22 H 0.215 0.785 23 H 0.144 0.856 24 H 0.132 0.868 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.780 -3.830 -0.132 8.672 hybrid contribution 1.007 1.121 0.038 1.507 sum 8.786 -2.709 -0.094 9.195 Atomic orbital electron populations 1.69599 1.07351 1.29045 1.36790 1.25720 0.94997 1.01085 0.93007 0.85896 0.80114 0.79884 0.78694 1.18578 1.19685 1.19691 1.18514 0.94498 0.88167 1.45289 0.90153 1.19270 0.93113 0.81862 1.01546 1.23799 0.93864 0.91378 1.12777 1.69984 1.24549 1.06434 1.18644 1.20011 0.82983 0.91135 1.19696 1.19785 0.96254 0.91101 0.99784 1.19967 0.91075 0.98047 1.08768 1.19629 0.95187 0.91939 1.10123 1.20454 0.84946 0.94281 1.01109 1.42251 1.03797 1.08296 1.52922 1.21116 0.89474 0.97935 1.02635 1.22284 0.97345 0.94560 1.01302 1.20753 0.90605 0.97389 1.01051 0.90607 0.78544 0.85553 0.86835 0.90027 0.90109 0.91021 0.90660 0.91456 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.22 10.31 55.55 0.57 -19.65 16 2 C 0.07 1.68 5.50 -17.28 -0.09 1.59 16 3 Si 0.93 18.20 29.56 -169.99 -5.03 13.18 16 4 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 5 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.43 -11.20 9.11 -38.38 -0.35 -11.54 16 8 H 0.08 1.95 5.65 -52.49 -0.30 1.65 16 9 C 0.15 4.25 6.79 -83.56 -0.57 3.68 16 10 C -0.06 -1.80 10.84 -16.76 -0.18 -1.99 16 11 N -0.48 -13.39 11.23 -11.88 -0.13 -13.52 16 12 C 0.09 2.48 7.77 -155.67 -1.21 1.27 16 13 C -0.05 -1.06 10.10 -39.45 -0.40 -1.46 16 14 C -0.16 -2.97 10.06 -39.39 -0.40 -3.37 16 15 C -0.16 -3.14 6.11 -104.43 -0.64 -3.78 16 16 C 0.10 2.10 7.07 -81.04 -0.57 1.53 16 17 N -0.39 -10.19 2.99 -55.48 -0.17 -10.35 16 18 C -0.07 -1.31 5.68 -26.75 -0.15 -1.46 16 19 C -0.12 -1.58 7.12 -25.30 -0.18 -1.76 16 20 C -0.06 -0.86 6.78 -26.80 -0.18 -1.04 16 21 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 22 H 0.20 5.63 5.73 -52.49 -0.30 5.33 16 23 H 0.13 2.39 8.06 -52.48 -0.42 1.97 16 24 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 25 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 26 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 251.84 15.07 3.80 3.80 Total: -1.00 -29.97 251.84 -8.93 -38.90 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -3.05 Total: 5.98 kcal Atomic # 6 Polarization: -13.41 SS G_CDS: -4.92 Total: -18.33 kcal Atomic # 7 Polarization: -43.80 SS G_CDS: 0.27 Total: -43.52 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.97 -8.93 -38.90 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238553558.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.536 kcal (2) G-P(sol) polarization free energy of solvation -29.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds