Wall clock time and date at job start Mon Mar 30 2020 02:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 119.99792 * 2 1 4 4 H 1.48504 * 109.46857 * 269.99829 * 3 2 1 5 5 H 1.48490 * 109.47523 * 29.99759 * 3 2 1 6 6 H 1.48499 * 109.47172 * 150.00106 * 3 2 1 7 7 C 1.37877 * 119.99960 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99973 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99934 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.46990 * 59.99792 * 9 7 2 11 11 N 1.46905 * 109.47067 * 299.99771 * 9 7 2 12 12 C 1.50700 * 109.47054 * 179.97438 * 9 7 2 13 13 C 1.39378 * 119.45720 * 79.99892 * 12 9 7 14 14 C 1.36210 * 121.01839 * 179.97438 * 13 12 9 15 15 C 1.40234 * 119.48079 * 0.02562 * 14 13 12 16 16 C 1.40695 * 122.22616 * 179.97438 * 15 14 13 17 17 C 1.36177 * 118.66805 * 180.02562 * 16 15 14 18 18 N 1.32603 * 121.87483 * 359.97438 * 17 16 15 19 19 C 1.31248 * 122.77769 * 0.02562 * 18 17 16 20 20 C 1.40426 * 119.88185 * 0.02562 * 19 18 17 21 21 C 1.36171 * 119.45712 * 259.98191 * 12 9 7 22 22 H 0.97001 * 120.00058 * 359.97438 * 1 2 3 23 23 H 1.00898 * 110.99750 * 176.04805 * 11 9 7 24 24 H 1.00897 * 110.99888 * 300.00164 * 11 9 7 25 25 H 1.08003 * 119.48993 * 359.97438 * 13 12 9 26 26 H 1.08004 * 120.26314 * 180.02562 * 14 13 12 27 27 H 1.08002 * 120.66277 * 359.74289 * 16 15 14 28 28 H 1.07994 * 119.05862 * 179.97438 * 17 16 15 29 29 H 1.08002 * 120.05779 * 179.97438 * 19 18 17 30 30 H 1.07997 * 120.24150 * 0.03596 * 21 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 0.4060 -2.5767 1.1997 12 6 2.2303 -3.6446 0.0005 13 6 2.8359 -4.0286 1.1957 14 6 3.7252 -5.0597 1.2323 15 6 4.0365 -5.7450 0.0491 16 6 4.9468 -6.8174 0.0204 17 6 5.1961 -7.4311 -1.1694 18 7 4.6063 -7.0461 -2.2929 19 6 3.7476 -6.0548 -2.3411 20 6 3.4213 -5.3542 -1.1687 21 6 2.5087 -4.2876 -1.1671 22 1 -0.4850 0.8401 0.0004 23 1 -0.1579 -3.4133 1.1912 24 1 0.9637 -2.5251 2.0390 25 1 2.5963 -3.5005 2.1068 26 1 4.1870 -5.3473 2.1653 27 1 5.4413 -7.1443 0.9232 28 1 5.8940 -8.2547 -1.1987 29 1 3.2933 -5.7778 -3.2810 30 1 2.0318 -3.9785 -2.0854 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238627131.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:58 Heat of formation + Delta-G solvation = 50.846018 kcal Electronic energy + Delta-G solvation = -14783.306626 eV Core-core repulsion = 12349.992182 eV Total energy + Delta-G solvation = -2433.314444 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.45838 -37.51670 -34.37534 -32.56192 -31.64635 -30.15360 -29.06463 -26.05099 -23.82175 -23.50967 -21.85372 -20.80842 -17.45878 -16.66138 -16.50283 -15.96253 -14.75242 -14.59864 -14.39576 -13.96929 -13.94282 -13.30631 -13.17276 -12.56805 -12.34140 -11.77789 -11.46457 -11.27582 -10.94499 -10.72835 -10.63291 -10.02894 -9.79382 -9.30884 -9.25395 -8.52561 -8.47703 -7.62417 -7.17463 -5.94898 -4.10855 0.68773 1.28493 2.29173 3.29596 3.36795 3.38232 3.46342 4.38086 4.48939 4.60312 4.82652 5.08220 5.14051 5.28438 5.34638 5.44031 5.69874 5.73768 5.85141 6.08818 6.12743 6.23569 6.41929 6.50823 6.80701 6.91561 6.93400 7.31983 7.44188 7.83006 8.08407 8.17738 8.53013 8.90288 9.05789 9.58555 11.09171 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.040611 B = 0.006586 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.295105 B = 4250.415576 C = 4370.603597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.085 3.915 3 Si 0.885 3.115 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.251 3.749 10 H 0.050 0.950 11 N -0.809 5.809 12 C -0.070 4.070 13 C -0.079 4.079 14 C -0.129 4.129 15 C -0.039 4.039 16 C -0.153 4.153 17 C 0.056 3.944 18 N -0.499 5.499 19 C 0.140 3.860 20 C -0.103 4.103 21 C -0.103 4.103 22 H 0.257 0.743 23 H 0.299 0.701 24 H 0.317 0.683 25 H 0.124 0.876 26 H 0.123 0.877 27 H 0.130 0.870 28 H 0.145 0.855 29 H 0.160 0.840 30 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.100 -10.616 0.774 12.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.122 4.122 3 Si 0.713 3.287 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.142 3.858 10 H 0.068 0.932 11 N -0.335 5.335 12 C -0.073 4.073 13 C -0.098 4.098 14 C -0.147 4.147 15 C -0.045 4.045 16 C -0.173 4.173 17 C -0.087 4.087 18 N -0.207 5.207 19 C -0.031 4.031 20 C -0.105 4.105 21 C -0.124 4.124 22 H 0.067 0.933 23 H 0.110 0.890 24 H 0.130 0.870 25 H 0.142 0.858 26 H 0.141 0.859 27 H 0.148 0.852 28 H 0.162 0.838 29 H 0.177 0.823 30 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.873 -10.353 -0.168 11.904 hybrid contribution 0.939 0.548 1.099 1.546 sum 6.811 -9.806 0.931 11.975 Atomic orbital electron populations 1.70099 1.05683 1.25872 1.46304 1.24941 0.94653 0.98581 0.94052 0.86736 0.79978 0.83900 0.78105 1.20669 1.21182 1.20021 1.20797 0.92219 0.89334 1.54932 0.92815 1.18305 0.87497 0.88797 0.91235 0.93222 1.59191 1.27988 1.42060 1.04262 1.21632 0.97179 0.96520 0.91973 1.20981 0.94920 0.95083 0.98865 1.20867 0.99808 0.97310 0.96671 1.18111 0.96668 0.95973 0.93701 1.21818 0.99095 0.96824 0.99548 1.21977 0.99011 0.99636 0.88105 1.67357 1.08702 1.14706 1.29928 1.23150 0.92676 0.90135 0.97111 1.19090 0.99019 0.98264 0.94126 1.20892 0.97770 0.94646 0.99066 0.93319 0.89049 0.86976 0.85794 0.85940 0.85234 0.83792 0.82332 0.85221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.87 12.77 55.43 0.71 -23.16 16 2 C 0.08 2.30 5.39 -17.82 -0.10 2.20 16 3 Si 0.89 20.85 29.54 -169.99 -5.02 15.83 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 7 C -0.53 -14.08 8.70 -34.44 -0.30 -14.38 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.25 5.86 2.82 -70.01 -0.20 5.67 16 10 H 0.05 1.27 7.95 -51.93 -0.41 0.86 16 11 N -0.81 -17.91 8.36 -6.65 -0.06 -17.96 16 12 C -0.07 -1.39 4.85 -104.94 -0.51 -1.90 16 13 C -0.08 -1.39 9.18 -39.89 -0.37 -1.76 16 14 C -0.13 -2.01 9.81 -39.56 -0.39 -2.40 16 15 C -0.04 -0.64 5.75 -106.81 -0.61 -1.25 16 16 C -0.15 -2.10 9.88 -39.40 -0.39 -2.49 16 17 C 0.06 0.77 11.07 -17.96 -0.20 0.57 16 18 N -0.50 -7.76 10.30 -13.16 -0.14 -7.90 16 19 C 0.14 2.15 11.05 -16.98 -0.19 1.97 16 20 C -0.10 -1.74 5.74 -106.86 -0.61 -2.35 16 21 C -0.10 -1.88 9.39 -39.52 -0.37 -2.25 16 22 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 23 H 0.30 5.91 9.06 -39.29 -0.36 5.55 16 24 H 0.32 6.62 7.28 -39.29 -0.29 6.33 16 25 H 0.12 2.09 6.60 -52.48 -0.35 1.74 16 26 H 0.12 1.56 8.06 -52.48 -0.42 1.13 16 27 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 28 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 29 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 30 H 0.13 2.20 8.00 -52.49 -0.42 1.78 16 LS Contribution 263.10 15.07 3.96 3.96 Total: -1.00 -29.63 263.10 -7.82 -37.46 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -3.05 Total: 10.15 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -4.23 Total: -18.38 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.52 Total: -49.02 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.63 -7.82 -37.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238627131.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.302 kcal (2) G-P(sol) polarization free energy of solvation -29.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds