Wall clock time and date at job start Mon Mar 30 2020 02:54:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99943 * 2 1 4 4 H 1.48498 * 109.46703 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46966 * 299.99167 * 3 2 1 6 6 H 1.48495 * 109.47260 * 59.99604 * 3 2 1 7 7 C 1.37872 * 119.99579 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99907 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00659 * 0.02562 * 7 2 1 10 10 N 1.46496 * 109.47617 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00051 * 180.02562 * 10 9 7 12 12 S 1.71204 * 120.00234 * 354.91898 * 11 10 9 13 13 N 1.34784 * 120.00071 * 175.19776 * 11 10 9 14 14 C 1.46926 * 120.63142 * 184.50892 * 13 11 10 15 15 C 1.53625 * 108.53964 * 126.36726 * 14 13 11 16 16 C 1.53045 * 109.24307 * 54.86136 * 15 14 13 17 17 C 1.53049 * 109.53197 * 298.50611 * 16 15 14 18 18 C 1.46932 * 120.62834 * 4.79214 * 13 11 10 19 19 H 0.97002 * 119.99539 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.47352 * 59.99398 * 9 7 2 21 21 H 1.09000 * 109.46761 * 300.00021 * 9 7 2 22 22 H 0.97005 * 119.99673 * 359.97438 * 10 9 7 23 23 H 1.08998 * 109.58763 * 246.19907 * 14 13 11 24 24 H 1.08996 * 109.58827 * 6.63076 * 14 13 11 25 25 H 1.08994 * 109.63851 * 294.86472 * 15 14 13 26 26 H 1.09004 * 109.42808 * 174.72161 * 15 14 13 27 27 H 1.08992 * 109.46237 * 178.49199 * 16 15 14 28 28 H 1.09003 * 109.46275 * 58.52395 * 16 15 14 29 29 H 1.08994 * 109.50059 * 301.41443 * 17 16 15 30 30 H 1.09004 * 109.49344 * 181.31584 * 17 16 15 31 31 H 1.09002 * 109.58479 * 353.37055 * 18 13 11 32 32 H 1.08995 * 109.58630 * 113.79770 * 18 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2127 6 1 1.8904 2.3965 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7537 -4.8833 0.0015 12 16 0.0758 -5.1981 0.1310 13 7 2.6257 -5.9064 -0.0951 14 6 2.1464 -7.2916 -0.1960 15 6 2.7822 -7.9395 -1.4353 16 6 4.3044 -7.8063 -1.3493 17 6 4.6882 -6.3249 -1.3302 18 6 4.0739 -5.6582 -0.0953 19 1 -0.4849 0.8401 -0.0004 20 1 0.6246 -2.5571 -0.8896 21 1 0.6240 -2.5566 0.8903 22 1 3.1567 -3.4354 0.0021 23 1 2.4357 -7.8444 0.6977 24 1 1.0610 -7.2964 -0.2958 25 1 2.4236 -7.4394 -2.3349 26 1 2.5110 -8.9946 -1.4724 27 1 4.7606 -8.2885 -2.2137 28 1 4.6599 -8.2853 -0.4369 29 1 4.3116 -5.8399 -2.2307 30 1 5.7735 -6.2307 -1.2925 31 1 4.2606 -4.5848 -0.1286 32 1 4.5171 -6.0805 0.8065 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000243443032.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:05 Heat of formation + Delta-G solvation = -15.077543 kcal Electronic energy + Delta-G solvation = -13941.870207 eV Core-core repulsion = 11641.141055 eV Total energy + Delta-G solvation = -2300.729152 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.92842 -37.95085 -35.20964 -33.88951 -32.25693 -29.61532 -26.94595 -25.09315 -24.23303 -23.13665 -21.04295 -19.69651 -18.20466 -18.01039 -16.69002 -16.25652 -15.85007 -15.48954 -15.37780 -14.87645 -14.69875 -14.37968 -14.19545 -13.38156 -12.98859 -12.87770 -12.53705 -12.35079 -12.31011 -12.21307 -11.75103 -11.63841 -11.50673 -11.46308 -10.76025 -9.68009 -8.97636 -8.57523 -8.30250 -6.50252 0.47396 0.94144 1.42002 1.43740 1.56055 1.70741 2.31593 2.53625 3.03786 3.66794 3.83512 3.93489 4.03804 4.25855 4.37075 4.46532 4.76435 4.82771 4.88374 4.92034 5.05068 5.10654 5.20168 5.21390 5.24458 5.41220 5.41583 5.67060 5.79901 5.94630 6.45926 6.69873 7.21925 8.80442 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.037555 B = 0.006749 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.391285 B = 4147.514985 C = 4759.320262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.985 3.015 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.565 4.565 8 H 0.083 0.917 9 C 0.277 3.723 10 N -0.652 5.652 11 C 0.579 3.421 12 S -0.774 6.774 13 N -0.563 5.563 14 C 0.099 3.901 15 C -0.127 4.127 16 C -0.116 4.116 17 C -0.129 4.129 18 C 0.086 3.914 19 H 0.270 0.730 20 H 0.006 0.994 21 H 0.009 0.991 22 H 0.406 0.594 23 H 0.094 0.906 24 H 0.092 0.908 25 H 0.048 0.952 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.108 0.892 31 H 0.079 0.921 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.636 -13.375 -2.137 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.191 4.191 3 Si 0.808 3.192 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.603 4.603 8 H 0.101 0.899 9 C 0.155 3.845 10 N -0.280 5.280 11 C 0.213 3.787 12 S -0.647 6.647 13 N -0.274 5.274 14 C -0.023 4.023 15 C -0.165 4.165 16 C -0.153 4.153 17 C -0.167 4.167 18 C -0.038 4.038 19 H 0.079 0.921 20 H 0.024 0.976 21 H 0.027 0.973 22 H 0.247 0.753 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.067 0.933 26 H 0.119 0.881 27 H 0.102 0.898 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.126 0.874 31 H 0.097 0.903 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 14.448 -13.393 -2.067 19.809 hybrid contribution 0.715 1.266 -0.025 1.454 sum 15.163 -12.127 -2.092 19.528 Atomic orbital electron populations 1.70167 1.08232 1.28660 1.48985 1.26013 0.95732 1.03725 0.93630 0.85106 0.79004 0.77292 0.77768 1.17617 1.20379 1.20415 1.21560 0.94171 0.90367 1.54208 0.89928 1.18916 0.87644 0.81649 0.96334 1.45571 1.11778 1.03421 1.67203 1.21677 0.92834 0.83389 0.80780 1.93287 1.00286 1.91328 1.79803 1.47458 1.05828 1.05865 1.68242 1.22369 1.02445 0.77344 1.00163 1.21982 0.96698 1.01762 0.96045 1.21558 0.94365 0.95428 1.03966 1.21930 1.02237 0.96594 0.95973 1.22346 0.77546 1.01966 1.01920 0.92088 0.97629 0.97259 0.75273 0.88809 0.88979 0.93290 0.88131 0.89804 0.89860 0.92860 0.87358 0.90261 0.87512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.55 13.29 21.45 0.28 -55.26 16 2 C 0.01 0.54 5.46 84.65 0.46 1.00 16 3 Si 0.99 41.68 29.54 68.60 2.03 43.70 16 4 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.93 16 7 C -0.57 -30.17 9.28 25.60 0.24 -29.93 16 8 H 0.08 3.95 7.60 -2.91 -0.02 3.93 16 9 C 0.28 15.03 4.90 85.63 0.42 15.45 16 10 N -0.65 -27.40 5.46 -353.92 -1.93 -29.34 16 11 C 0.58 23.59 7.71 179.05 1.38 24.98 16 12 S -0.77 -39.76 27.03 -56.49 -1.53 -41.28 16 13 N -0.56 -16.15 2.97 -706.06 -2.09 -18.25 16 14 C 0.10 2.45 6.33 86.51 0.55 3.00 16 15 C -0.13 -2.24 6.10 30.82 0.19 -2.06 16 16 C -0.12 -1.43 5.88 30.63 0.18 -1.25 16 17 C -0.13 -1.85 6.08 30.68 0.19 -1.67 16 18 C 0.09 1.64 6.43 86.36 0.56 2.20 16 19 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 20 H 0.01 0.36 8.09 -2.39 -0.02 0.34 16 21 H 0.01 0.59 7.89 -2.39 -0.02 0.57 16 22 H 0.41 13.98 5.78 -92.70 -0.54 13.45 16 23 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.09 2.99 5.99 -3.31 -0.02 2.97 16 25 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 27 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.08 1.56 5.57 -2.39 -0.01 1.55 16 32 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -74.63 272.12 1.48 -73.15 By element: Atomic # 1 Polarization: 14.99 SS G_CDS: 0.57 Total: 15.56 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 4.16 Total: 11.71 kcal Atomic # 7 Polarization: -99.10 SS G_CDS: -3.74 Total: -102.84 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: -39.76 SS G_CDS: -1.53 Total: -41.28 kcal Total: -74.63 1.48 -73.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000243443032.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.074 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds