Wall clock time and date at job start Mon Mar 30 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35291 * 126.19305 * 2 1 4 4 C 1.39969 * 107.96753 * 180.24131 * 3 2 1 5 5 N 1.30852 * 108.37274 * 359.75472 * 4 3 2 6 6 N 1.35889 * 126.19410 * 179.82301 * 2 1 3 7 7 C 1.39606 * 126.10176 * 0.02602 * 6 2 1 8 8 C 1.39411 * 119.82711 * 144.71491 * 7 6 2 9 9 C 1.36407 * 120.17636 * 180.02562 * 8 7 6 10 10 C 1.40852 * 119.82031 * 359.97438 * 9 8 7 11 11 C 1.41171 * 120.17191 * 179.97438 * 10 9 8 12 12 H 1.08001 * 119.99732 * 335.41049 * 11 10 9 13 13 C 1.39929 * 120.00184 * 155.68397 * 11 10 9 14 14 N 1.30856 * 120.00118 * 341.95643 * 13 11 10 15 15 Si 1.86798 * 120.00301 * 161.95688 * 13 11 10 16 16 H 1.48504 * 109.46991 * 59.99916 * 15 13 11 17 17 H 1.48495 * 109.47457 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47071 * 300.00393 * 15 13 11 19 19 C 1.40854 * 119.66023 * 0.25595 * 10 9 8 20 20 C 1.36414 * 119.81995 * 359.48896 * 19 10 9 21 21 H 1.08994 * 109.47009 * 270.17648 * 1 2 3 22 22 H 1.08997 * 109.47173 * 30.17947 * 1 2 3 23 23 H 1.09005 * 109.47029 * 150.17364 * 1 2 3 24 24 H 1.07996 * 126.01239 * 359.97438 * 3 2 1 25 25 H 1.08001 * 125.81356 * 179.74033 * 4 3 2 26 26 H 1.08000 * 119.90895 * 359.97438 * 8 7 6 27 27 H 1.07996 * 120.08663 * 179.97438 * 9 8 7 28 28 H 0.96996 * 119.99989 * 179.97438 * 14 13 11 29 29 H 1.07998 * 120.09397 * 179.72268 * 19 10 9 30 30 H 1.07997 * 119.91366 * 180.27361 * 20 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3059 1.0918 0.0000 4 6 3.6354 0.6541 -0.0056 5 7 3.6388 -0.6544 -0.0036 6 7 2.3095 -1.0966 0.0034 7 6 1.8849 -2.4266 0.0070 8 6 2.6148 -3.3893 -0.6887 9 6 2.2062 -4.6908 -0.6904 10 6 1.0437 -5.0608 0.0137 11 6 0.6138 -6.4055 0.0164 12 1 0.8966 -7.0645 -0.7911 13 6 -0.1835 -6.8830 1.0626 14 7 -0.2435 -6.2253 2.1922 15 14 -1.1622 -8.4593 0.8466 16 1 -0.2342 -9.5830 0.5611 17 1 -1.9187 -8.7469 2.0916 18 1 -2.1113 -8.3016 -0.2847 19 6 0.3091 -4.0814 0.7100 20 6 0.7336 -2.7850 0.7065 21 1 -0.3633 0.0032 1.0276 22 1 -0.3633 0.8883 -0.5166 23 1 -0.3633 -0.8916 -0.5112 24 1 1.9759 2.1201 -0.0004 25 1 4.5096 1.2883 -0.0110 26 1 3.5057 -3.1038 -1.2283 27 1 2.7725 -5.4353 -1.2301 28 1 -0.7965 -6.5561 2.9172 29 1 -0.5857 -4.3566 1.2485 30 1 0.1739 -2.0335 1.2436 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257981643.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:09 Heat of formation + Delta-G solvation = 73.883064 kcal Electronic energy + Delta-G solvation = -14817.334823 eV Core-core repulsion = 12385.019341 eV Total energy + Delta-G solvation = -2432.315482 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.20965 -39.46447 -35.94482 -33.93356 -32.97268 -31.46429 -30.43943 -27.85235 -26.88672 -23.62732 -23.15576 -21.47432 -20.65270 -19.36859 -18.14477 -17.21390 -16.22522 -15.93123 -15.56780 -15.34379 -14.65416 -14.38844 -14.17489 -13.88527 -13.70453 -13.56526 -13.26063 -12.96476 -12.85186 -12.61869 -12.41576 -11.81630 -11.59475 -11.36857 -11.12573 -10.61812 -9.70013 -9.63205 -8.96587 -8.72911 -6.40405 0.40191 0.97732 1.25704 1.40314 1.51808 1.57993 1.81898 1.97985 2.18047 2.61613 3.55738 3.86835 4.01137 4.20148 4.29766 4.37716 4.69585 4.74914 4.82839 4.87686 4.99251 5.03513 5.09899 5.21490 5.35251 5.49602 5.51035 5.77232 5.92600 6.01658 6.13231 6.42136 6.57498 6.78734 6.88266 6.95534 8.20695 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.054236 B = 0.006328 C = 0.005921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 516.139782 B = 4423.915295 C = 4727.729669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.059 3.941 3 C -0.283 4.283 4 C 0.033 3.967 5 N -0.353 5.353 6 N -0.302 5.302 7 C -0.017 4.017 8 C -0.074 4.074 9 C -0.229 4.229 10 C 0.085 3.915 11 C -0.479 4.479 12 H 0.085 0.915 13 C 0.037 3.963 14 N -0.812 5.812 15 Si 0.988 3.012 16 H -0.259 1.259 17 H -0.266 1.266 18 H -0.257 1.257 19 C -0.171 4.171 20 C -0.091 4.091 21 H 0.087 0.913 22 H 0.111 0.889 23 H 0.061 0.939 24 H 0.179 0.821 25 H 0.215 0.785 26 H 0.102 0.898 27 H 0.110 0.890 28 H 0.294 0.706 29 H 0.119 0.881 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.534 7.562 -1.789 8.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.068 4.068 3 C -0.312 4.312 4 C -0.151 4.151 5 N -0.174 5.174 6 N -0.078 5.078 7 C -0.108 4.108 8 C -0.094 4.094 9 C -0.249 4.249 10 C 0.082 3.918 11 C -0.507 4.507 12 H 0.103 0.897 13 C -0.180 4.180 14 N -0.436 5.436 15 Si 0.808 3.192 16 H -0.184 1.184 17 H -0.190 1.190 18 H -0.181 1.181 19 C -0.191 4.191 20 C -0.111 4.111 21 H 0.106 0.894 22 H 0.129 0.871 23 H 0.080 0.920 24 H 0.196 0.804 25 H 0.231 0.769 26 H 0.121 0.879 27 H 0.128 0.872 28 H 0.105 0.895 29 H 0.136 0.864 30 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.914 6.422 -1.538 6.875 hybrid contribution -0.440 -0.033 0.109 0.455 sum -2.354 6.389 -1.429 6.957 Atomic orbital electron populations 1.20624 0.85723 1.04452 1.03884 1.22049 0.96345 0.86781 1.01600 1.21539 0.91715 0.99603 1.18343 1.24470 0.99711 0.91581 0.99364 1.77345 0.98269 1.14704 1.27097 1.45808 1.03718 1.04221 1.54055 1.17119 1.01724 0.80912 1.11069 1.20240 0.98323 0.92956 0.97916 1.20794 0.99384 0.95084 1.09608 1.18057 0.89726 0.94219 0.89769 1.19916 1.27730 0.95975 1.07096 0.89686 1.26866 0.95369 1.02654 0.93136 1.69853 1.30861 1.39770 1.03140 0.85158 0.78404 0.76561 0.79123 1.18352 1.19030 1.18141 1.20925 1.01730 0.91104 1.05358 1.20488 0.95717 0.96753 0.98172 0.89427 0.87055 0.92017 0.80392 0.76899 0.87948 0.87206 0.89456 0.86364 0.86270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.42 8.60 71.24 0.61 -1.80 16 2 C 0.06 2.05 6.77 41.25 0.28 2.32 16 3 C -0.28 -8.41 10.72 22.01 0.24 -8.17 16 4 C 0.03 1.05 12.02 85.26 1.02 2.07 16 5 N -0.35 -14.81 12.32 -56.95 -0.70 -15.51 16 6 N -0.30 -13.05 3.73 -175.16 -0.65 -13.70 16 7 C -0.02 -0.79 6.30 38.47 0.24 -0.54 16 8 C -0.07 -3.62 9.68 22.12 0.21 -3.41 16 9 C -0.23 -11.42 9.74 22.48 0.22 -11.20 16 10 C 0.09 4.49 5.57 -21.28 -0.12 4.37 16 11 C -0.48 -24.52 9.04 23.40 0.21 -24.31 16 12 H 0.09 4.14 7.91 -2.91 -0.02 4.12 16 13 C 0.04 1.75 5.13 85.25 0.44 2.19 16 14 N -0.81 -40.04 10.97 21.83 0.24 -39.80 16 15 Si 0.99 35.51 29.59 68.60 2.03 37.54 16 16 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 17 H -0.27 -9.03 7.11 99.48 0.71 -8.32 16 18 H -0.26 -9.02 7.11 99.48 0.71 -8.32 16 19 C -0.17 -8.68 8.64 22.48 0.19 -8.49 16 20 C -0.09 -4.22 8.22 22.13 0.18 -4.04 16 21 H 0.09 2.15 7.74 -2.39 -0.02 2.14 16 22 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 23 H 0.06 1.89 6.92 -2.38 -0.02 1.88 16 24 H 0.18 3.77 8.06 -2.91 -0.02 3.75 16 25 H 0.21 4.78 8.06 -2.91 -0.02 4.76 16 26 H 0.10 4.79 8.05 -2.91 -0.02 4.76 16 27 H 0.11 5.11 8.06 -2.91 -0.02 5.08 16 28 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 29 H 0.12 6.08 6.17 -2.91 -0.02 6.06 16 30 H 0.12 4.89 6.10 -2.91 -0.02 4.87 16 Total: -1.00 -61.46 261.85 5.79 -55.66 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 1.14 Total: 26.81 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 3.73 Total: -51.01 kcal Atomic # 7 Polarization: -67.89 SS G_CDS: -1.12 Total: -69.01 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Total: -61.46 5.79 -55.66 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257981643.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.545 kcal (2) G-P(sol) polarization free energy of solvation -61.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds