Wall clock time and date at job start Mon Mar 30 2020 03:19:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00017 * 2 1 4 4 H 1.48504 * 109.46987 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46985 * 299.99571 * 3 2 1 6 6 H 1.48500 * 109.47358 * 59.99809 * 3 2 1 7 7 C 1.37881 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00031 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99582 * 0.02562 * 7 2 1 10 10 H 1.08996 * 110.28583 * 302.11765 * 9 7 2 11 11 C 1.54453 * 110.31661 * 179.97438 * 9 7 2 12 12 O 1.44839 * 102.90037 * 219.20266 * 11 9 7 13 13 C 1.44387 * 103.23211 * 36.60883 * 12 11 9 14 14 H 1.09000 * 110.10797 * 80.01984 * 13 12 11 15 15 C 1.52990 * 110.11625 * 201.60030 * 13 12 11 16 16 C 1.52999 * 109.47395 * 293.55212 * 15 13 12 17 17 H 1.08999 * 110.99162 * 57.74261 * 16 15 13 18 18 C 1.55457 * 111.18505 * 181.89747 * 16 15 13 19 19 C 1.54382 * 102.18540 * 152.00739 * 18 16 15 20 20 O 1.43233 * 107.66464 * 338.74226 * 19 18 16 21 21 C 1.43650 * 109.97542 * 358.24175 * 20 19 18 22 22 O 1.43778 * 106.17359 * 320.78311 * 13 12 11 23 23 H 0.96998 * 119.99684 * 0.02562 * 1 2 3 24 24 H 1.09004 * 110.72993 * 100.85300 * 11 9 7 25 25 H 1.09003 * 110.88396 * 337.62357 * 11 9 7 26 26 H 1.08994 * 109.47486 * 173.54903 * 15 13 12 27 27 H 1.09002 * 109.46848 * 53.54984 * 15 13 12 28 28 H 1.08994 * 110.83103 * 33.85804 * 18 16 15 29 29 H 1.08999 * 110.92148 * 270.19682 * 18 16 15 30 30 H 1.09002 * 109.83024 * 219.18066 * 19 18 16 31 31 H 1.08996 * 109.83002 * 98.29659 * 19 18 16 32 32 H 1.08996 * 110.30866 * 143.34644 * 21 20 19 33 33 H 1.09000 * 110.30998 * 265.51637 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.5910 -2.5544 0.8662 11 6 2.2372 -3.6878 0.0005 12 8 1.6016 -4.6353 -0.8918 13 6 1.0119 -3.7914 -1.9042 14 1 1.7696 -3.4868 -2.6261 15 6 -0.1216 -4.5345 -2.6138 16 6 0.4562 -5.7083 -3.4071 17 1 1.0080 -6.3859 -2.7556 18 6 -0.6583 -6.4642 -4.1838 19 6 0.1176 -7.0423 -5.3868 20 8 1.3099 -6.2652 -5.5490 21 6 1.3440 -5.2098 -4.5750 22 8 0.4936 -2.6412 -1.2146 23 1 -0.4849 0.8401 -0.0004 24 1 2.3358 -4.1073 1.0018 25 1 3.2101 -3.3856 -0.3872 26 1 -0.6330 -3.8532 -3.2937 27 1 -0.8293 -4.9091 -1.8743 28 1 -1.4339 -5.7750 -4.5174 29 1 -1.0830 -7.2631 -3.5759 30 1 -0.4929 -6.9752 -6.2873 31 1 0.3780 -8.0828 -5.1933 32 1 2.3651 -5.0457 -4.2308 33 1 0.9341 -4.2922 -4.9969 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258559232.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:44 Heat of formation + Delta-G solvation = -148.931238 kcal Electronic energy + Delta-G solvation = -16332.397296 eV Core-core repulsion = 13550.818190 eV Total energy + Delta-G solvation = -2781.579106 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60845 -38.78901 -34.04885 -33.68751 -32.46171 -30.35207 -28.91092 -26.69121 -24.67086 -22.95060 -21.64044 -21.01617 -20.12385 -16.88596 -16.70778 -16.21543 -15.43193 -15.23990 -15.13370 -14.59702 -14.32301 -13.48967 -13.23514 -13.10392 -12.42257 -12.16764 -12.06949 -11.66313 -11.46123 -11.27417 -11.00040 -10.85655 -10.67891 -10.59083 -10.45844 -10.27177 -9.48049 -9.43378 -9.20502 -8.65957 -8.13720 -6.12166 -4.28489 3.23669 3.31837 3.35236 3.91866 4.32964 4.46196 4.57509 4.74786 4.92819 5.06646 5.20244 5.32749 5.45378 5.51930 5.66846 5.74178 5.79400 5.86674 5.98079 6.02812 6.05343 6.08956 6.28959 6.34305 6.41264 6.54801 6.90406 7.02224 7.41519 7.74763 8.09266 8.37334 8.83161 9.44758 10.94893 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.044811 B = 0.006087 C = 0.005930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.698059 B = 4598.720338 C = 4720.860351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.080 3.920 3 Si 0.895 3.105 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.183 3.817 10 H 0.052 0.948 11 C 0.021 3.979 12 O -0.400 6.400 13 C 0.225 3.775 14 H 0.054 0.946 15 C -0.104 4.104 16 C -0.116 4.116 17 H 0.093 0.907 18 C -0.152 4.152 19 C 0.052 3.948 20 O -0.389 6.389 21 C 0.053 3.947 22 O -0.367 6.367 23 H 0.263 0.737 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.243 -10.162 -6.310 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.126 4.126 3 Si 0.722 3.278 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.588 4.588 8 H 0.082 0.918 9 C 0.127 3.873 10 H 0.070 0.930 11 C -0.055 4.055 12 O -0.321 6.321 13 C 0.129 3.871 14 H 0.071 0.929 15 C -0.142 4.142 16 C -0.135 4.135 17 H 0.111 0.889 18 C -0.190 4.190 19 C -0.025 4.025 20 O -0.309 6.309 21 C -0.023 4.023 22 O -0.289 6.289 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.099 0.901 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.105 0.895 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.436 -10.194 -6.515 12.106 hybrid contribution 0.415 1.073 0.208 1.169 sum -0.020 -9.121 -6.308 11.090 Atomic orbital electron populations 1.70041 1.06139 1.26817 1.46775 1.25069 0.94784 0.99477 0.93312 0.86512 0.80198 0.83317 0.77793 1.19530 1.20712 1.20723 1.21297 0.92873 0.90327 1.54331 0.91770 1.21080 0.88760 0.92488 0.84932 0.93019 1.24405 0.97603 0.89850 0.93639 1.89232 1.71897 1.31342 1.39675 1.24027 0.91484 0.81850 0.89777 0.92896 1.21616 0.97828 0.95754 0.98985 1.22827 0.96178 0.97757 0.96746 0.88897 1.23210 0.98532 1.00558 0.96665 1.23075 0.86391 0.95352 0.97681 1.88371 1.41661 1.44630 1.56190 1.23541 1.00927 0.90327 0.87553 1.89168 1.59634 1.43597 1.36457 0.92736 0.89733 0.91987 0.90118 0.90453 0.90356 0.90024 0.91780 0.91594 0.89534 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.31 13.05 55.43 0.72 -24.58 16 2 C 0.08 2.23 5.43 -17.82 -0.10 2.14 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.55 -15.17 8.78 -34.44 -0.30 -15.47 16 8 H 0.06 1.70 7.55 -52.49 -0.40 1.31 16 9 C 0.18 4.72 3.52 -27.12 -0.10 4.62 16 10 H 0.05 1.43 8.14 -51.93 -0.42 1.00 16 11 C 0.02 0.46 7.34 37.92 0.28 0.74 16 12 O -0.40 -8.36 11.18 -59.28 -0.66 -9.02 16 13 C 0.22 4.67 3.79 37.15 0.14 4.81 16 14 H 0.05 1.09 7.31 -51.93 -0.38 0.71 16 15 C -0.10 -1.75 4.87 -26.74 -0.13 -1.88 16 16 C -0.12 -1.64 3.03 -88.29 -0.27 -1.90 16 17 H 0.09 1.37 7.92 -51.93 -0.41 0.96 16 18 C -0.15 -1.73 6.52 -24.70 -0.16 -1.89 16 19 C 0.05 0.59 7.79 37.88 0.30 0.89 16 20 O -0.39 -5.68 11.36 -35.23 -0.40 -6.08 16 21 C 0.05 0.75 6.43 38.18 0.25 1.00 16 22 O -0.37 -9.57 10.64 -59.28 -0.63 -10.20 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 25 H 0.06 1.28 7.69 -51.93 -0.40 0.88 16 26 H 0.08 1.32 8.10 -51.93 -0.42 0.89 16 27 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 0.85 8.04 -51.93 -0.42 0.43 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 1.24 8.00 -51.93 -0.42 0.82 16 33 H 0.06 0.89 8.00 -51.93 -0.42 0.48 16 LS Contribution 274.34 15.07 4.13 4.13 Total: -1.00 -30.63 274.34 -6.88 -37.50 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.93 Total: -0.74 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -0.09 Total: -6.95 kcal Atomic # 7 Polarization: -25.31 SS G_CDS: 0.72 Total: -24.58 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -1.69 Total: -25.30 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.63 -6.88 -37.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258559232.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.428 kcal (2) G-P(sol) polarization free energy of solvation -30.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds