Wall clock time and date at job start Mon Mar 30 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.62704 * 2 1 4 4 H 1.09009 * 110.33445 * 187.95205 * 3 2 1 5 5 C 1.54483 * 110.37165 * 65.70235 * 3 2 1 6 6 C 1.54506 * 104.06174 * 217.18860 * 5 3 2 7 7 C 1.54472 * 104.06533 * 359.97438 * 6 5 3 8 8 O 1.44420 * 110.37578 * 310.31832 * 3 2 1 9 9 O 1.43752 * 109.63454 * 239.76206 * 2 1 3 10 10 C 1.44790 * 104.81250 * 264.43504 * 9 2 1 11 11 C 1.54914 * 101.72178 * 323.89188 * 10 9 2 12 12 H 1.09003 * 110.84181 * 277.09822 * 11 10 9 13 13 C 1.50695 * 110.69487 * 153.96133 * 11 10 9 14 14 H 1.08004 * 120.00130 * 4.89159 * 13 11 10 15 15 C 1.37876 * 119.99909 * 184.88857 * 13 11 10 16 16 N 1.31515 * 119.99824 * 0.02562 * 15 13 11 17 17 Si 1.86797 * 120.00265 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47089 * 89.99707 * 17 15 13 19 19 H 1.48492 * 109.47662 * 210.00373 * 17 15 13 20 20 H 1.48504 * 109.46999 * 330.00334 * 17 15 13 21 21 O 1.43369 * 109.63426 * 120.39559 * 2 1 3 22 22 H 1.09002 * 109.47153 * 300.30456 * 1 2 3 23 23 H 1.09001 * 109.46832 * 180.30647 * 1 2 3 24 24 H 1.09004 * 109.47261 * 60.30628 * 1 2 3 25 25 H 1.08998 * 110.51002 * 335.83726 * 5 3 2 26 26 H 1.09004 * 110.50921 * 98.54542 * 5 3 2 27 27 H 1.08998 * 110.51216 * 118.64441 * 6 5 3 28 28 H 1.09004 * 110.51259 * 241.21493 * 6 5 3 29 29 H 1.09000 * 110.37405 * 142.80694 * 7 6 5 30 30 H 1.08996 * 110.37681 * 265.03612 * 7 6 5 31 31 H 1.08998 * 110.97323 * 205.78218 * 10 9 2 32 32 H 1.09002 * 110.97974 * 82.00427 * 10 9 2 33 33 H 0.97000 * 119.99459 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 1 3.1246 1.4579 -0.1414 5 6 1.6632 2.1478 1.3199 6 6 1.3301 3.5937 0.8891 7 6 1.5495 3.5898 -0.6400 8 8 1.3877 2.2090 -1.0322 9 8 2.0130 -0.6818 -1.1697 10 6 2.2652 -2.0381 -0.7299 11 6 2.7885 -1.8097 0.7102 12 1 3.8512 -1.5671 0.7027 13 6 2.5264 -3.0192 1.5701 14 1 2.1055 -3.9122 1.1321 15 6 2.8239 -2.9858 2.9159 16 7 3.3361 -1.8982 3.4493 17 14 2.4984 -4.4847 3.9820 18 1 3.7007 -5.3561 3.9913 19 1 2.1918 -4.0492 5.3682 20 1 1.3436 -5.2405 3.4339 21 8 2.0117 -0.6832 1.1647 22 1 -0.3633 0.5186 0.8872 23 1 -0.3633 -1.0277 0.0055 24 1 -0.3634 0.5091 -0.8927 25 1 0.7914 1.6728 1.7698 26 1 2.5041 2.1401 2.0135 27 1 0.2936 3.8336 1.1259 28 1 2.0046 4.3010 1.3716 29 1 0.8032 4.2135 -1.1320 30 1 2.5534 3.9397 -0.8802 31 1 3.0245 -2.5145 -1.3501 32 1 1.3458 -2.6234 -0.7228 33 1 3.5450 -1.8746 4.3962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258774515.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:27 Heat of formation + Delta-G solvation = -157.801119 kcal Electronic energy + Delta-G solvation = -17019.133935 eV Core-core repulsion = 14237.170202 eV Total energy + Delta-G solvation = -2781.963733 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.48047 -39.80934 -35.81741 -34.80623 -33.19859 -32.67029 -30.00459 -28.93553 -26.76805 -24.71167 -23.22422 -22.30037 -21.19155 -18.85987 -18.30239 -17.45914 -17.17435 -16.64894 -16.20624 -16.01205 -15.37075 -14.98799 -14.62021 -14.35556 -14.01118 -13.81592 -13.42518 -13.00799 -12.83388 -12.76223 -12.60051 -12.46514 -12.35169 -12.15917 -12.14144 -11.57109 -11.28684 -10.86778 -10.85696 -10.65961 -10.07798 -8.21691 -6.44510 1.42094 1.43271 1.54247 2.37424 2.57231 2.83823 3.10721 3.60470 3.68730 3.85947 3.97451 4.11497 4.13795 4.21212 4.32752 4.41103 4.47605 4.60324 4.70850 4.77574 4.84715 4.91213 4.98370 5.01693 5.12981 5.14201 5.30436 5.39617 5.64404 5.85999 6.03247 6.50516 6.80205 7.31906 8.86720 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.039994 B = 0.008286 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.941346 B = 3378.287827 C = 3765.833126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.240 3.760 3 C 0.081 3.919 4 H 0.053 0.947 5 C -0.137 4.137 6 C -0.144 4.144 7 C 0.036 3.964 8 O -0.381 6.381 9 O -0.396 6.396 10 C 0.028 3.972 11 C 0.178 3.822 12 H 0.010 0.990 13 C -0.559 4.559 14 H 0.074 0.926 15 C 0.027 3.973 16 N -0.897 5.897 17 Si 0.968 3.032 18 H -0.268 1.268 19 H -0.283 1.283 20 H -0.264 1.264 21 O -0.373 6.373 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.066 0.934 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.114 8.100 -4.592 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.162 3.838 3 C 0.022 3.978 4 H 0.071 0.929 5 C -0.174 4.174 6 C -0.182 4.182 7 C -0.040 4.040 8 O -0.300 6.300 9 O -0.317 6.317 10 C -0.048 4.048 11 C 0.123 3.877 12 H 0.028 0.972 13 C -0.596 4.596 14 H 0.093 0.907 15 C -0.176 4.176 16 N -0.533 5.533 17 Si 0.792 3.208 18 H -0.193 1.193 19 H -0.208 1.208 20 H -0.188 1.188 21 O -0.294 6.294 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.099 0.901 25 H 0.089 0.911 26 H 0.087 0.913 27 H 0.108 0.892 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.084 0.916 31 H 0.129 0.871 32 H 0.088 0.912 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.169 8.264 -4.630 10.350 hybrid contribution 0.320 -0.786 0.832 1.189 sum -3.849 7.477 -3.798 9.228 Atomic orbital electron populations 1.22151 0.93335 1.02165 1.03068 1.23359 0.93894 0.89825 0.76686 1.23050 0.95762 0.90518 0.88443 0.92894 1.22782 1.02322 0.96232 0.96113 1.22953 1.03908 0.95268 0.96023 1.23687 1.02613 0.82911 0.94793 1.89110 1.77062 1.18146 1.45693 1.89099 1.86268 1.23208 1.33151 1.24475 1.01051 0.83449 0.95788 1.21208 0.90707 0.85100 0.90695 0.97245 1.21342 1.45601 0.97873 0.94825 0.90749 1.25957 0.93157 0.99034 0.99465 1.70168 1.41252 1.28973 1.12926 0.85424 0.79067 0.78839 0.77492 1.19345 1.20827 1.18782 1.89179 1.69965 1.43060 1.27243 0.90881 0.92918 0.90087 0.91115 0.91334 0.89198 0.88652 0.86550 0.91620 0.87086 0.91169 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.80 8.77 71.98 0.63 -5.17 16 2 C 0.24 10.65 0.95 30.59 0.03 10.68 16 3 C 0.08 3.16 3.06 31.10 0.10 3.25 16 4 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 5 C -0.14 -4.65 6.04 31.61 0.19 -4.46 16 6 C -0.14 -3.42 7.09 31.61 0.22 -3.20 16 7 C 0.04 0.88 7.63 72.48 0.55 1.44 16 8 O -0.38 -13.29 10.34 -148.98 -1.54 -14.83 16 9 O -0.40 -17.97 11.00 -125.52 -1.38 -19.35 16 10 C 0.03 1.25 7.33 72.64 0.53 1.79 16 11 C 0.18 9.48 3.51 30.50 0.11 9.59 16 12 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 13 C -0.56 -30.97 8.83 25.60 0.23 -30.75 16 14 H 0.07 3.90 7.78 -2.91 -0.02 3.87 16 15 C 0.03 1.50 5.42 84.65 0.46 1.96 16 16 N -0.90 -52.82 12.95 21.45 0.28 -52.54 16 17 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 18 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 20 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 21 O -0.37 -19.73 9.65 -126.22 -1.22 -20.95 16 22 H 0.07 2.66 6.43 -2.39 -0.02 2.65 16 23 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 24 H 0.08 2.88 7.51 -2.38 -0.02 2.86 16 25 H 0.07 2.54 6.17 -2.39 -0.01 2.53 16 26 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 27 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 29 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 4.31 8.14 -2.39 -0.02 4.29 16 32 H 0.07 2.99 8.04 -2.39 -0.02 2.97 16 33 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -65.25 270.95 2.30 -62.95 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 1.09 Total: 14.78 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: 3.05 Total: -14.87 kcal Atomic # 7 Polarization: -52.82 SS G_CDS: 0.28 Total: -52.54 kcal Atomic # 8 Polarization: -51.00 SS G_CDS: -4.14 Total: -55.14 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -65.25 2.30 -62.95 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258774515.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.848 kcal (2) G-P(sol) polarization free energy of solvation -65.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds