Wall clock time and date at job start Mon Mar 30 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 119.99746 * 2 1 4 4 H 1.48501 * 109.46818 * 180.02562 * 3 2 1 5 5 H 1.48489 * 109.47600 * 300.00464 * 3 2 1 6 6 H 1.48507 * 109.46804 * 60.00673 * 3 2 1 7 7 C 1.37878 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99884 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.28745 * 302.11280 * 9 7 2 11 11 C 1.54458 * 110.32161 * 180.02562 * 9 7 2 12 12 O 1.44833 * 102.89907 * 219.30301 * 11 9 7 13 13 C 1.44386 * 103.23474 * 36.60905 * 12 11 9 14 14 H 1.09002 * 110.11392 * 79.95560 * 13 12 11 15 15 C 1.52994 * 110.11473 * 201.53813 * 13 12 11 16 16 H 1.09001 * 109.52291 * 57.82973 * 15 13 12 17 17 C 1.53181 * 109.52597 * 297.70483 * 15 13 12 18 18 C 1.53175 * 109.03981 * 183.11398 * 17 15 13 19 19 C 1.53084 * 109.16282 * 56.97959 * 18 17 15 20 20 O 1.42906 * 109.41689 * 302.39152 * 19 18 17 21 21 C 1.42901 * 114.09990 * 61.15734 * 20 19 18 22 22 O 1.43787 * 106.22632 * 320.74610 * 13 12 11 23 23 H 0.96996 * 119.99858 * 359.97438 * 1 2 3 24 24 H 1.08994 * 110.72813 * 100.94371 * 11 9 7 25 25 H 1.09004 * 110.72259 * 337.65186 * 11 9 7 26 26 H 1.08997 * 109.53955 * 302.98035 * 17 15 13 27 27 H 1.09007 * 109.54142 * 63.15067 * 17 15 13 28 28 H 1.08999 * 109.51896 * 176.88773 * 18 17 15 29 29 H 1.08997 * 109.51905 * 297.00764 * 18 17 15 30 30 H 1.08996 * 109.48635 * 62.37358 * 19 18 17 31 31 H 1.09005 * 109.48325 * 182.39875 * 19 18 17 32 32 H 1.08994 * 109.48268 * 178.85982 * 21 20 19 33 33 H 1.09001 * 109.47556 * 58.82369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8904 2.3963 1.2127 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5918 -2.5549 0.8657 11 6 2.2373 -3.6879 -0.0005 12 8 1.6029 -4.6342 -0.8948 13 6 1.0146 -3.7892 -1.9070 14 1 1.7734 -3.4829 -2.6270 15 6 -0.1170 -4.5321 -2.6200 16 1 -0.8651 -4.8429 -1.8907 17 6 0.4484 -5.7658 -3.3306 18 6 -0.6785 -6.4572 -4.1041 19 6 -1.3028 -5.4586 -5.0821 20 8 -1.7809 -4.3219 -4.3600 21 6 -0.7632 -3.6079 -3.6554 22 8 0.4941 -2.6396 -1.2179 23 1 -0.4850 0.8400 0.0004 24 1 2.3346 -4.1084 1.0003 25 1 3.2093 -3.3827 -0.3882 26 1 1.2322 -5.4600 -4.0236 27 1 0.8619 -6.4538 -2.5931 28 1 -0.2737 -7.3046 -4.6574 29 1 -1.4380 -6.8077 -3.4054 30 1 -0.5521 -5.1402 -5.8054 31 1 -2.1334 -5.9328 -5.6051 32 1 -1.2049 -2.7489 -3.1504 33 1 -0.0053 -3.2654 -4.3600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258794251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:30 Heat of formation + Delta-G solvation = -151.066224 kcal Electronic energy + Delta-G solvation = -16657.350374 eV Core-core repulsion = 13875.678687 eV Total energy + Delta-G solvation = -2781.671686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.60287 -38.44617 -33.99332 -33.63109 -32.55693 -31.33359 -28.72674 -25.14027 -24.86585 -24.08967 -21.60810 -20.94873 -19.88621 -16.82675 -16.33327 -15.99505 -15.60241 -15.22016 -14.91090 -14.50152 -14.17219 -13.68839 -13.44826 -12.77191 -12.43281 -12.31283 -12.06459 -11.75564 -11.20299 -11.15017 -10.97142 -10.90834 -10.64338 -10.48151 -10.26983 -10.04166 -9.44495 -9.30735 -9.14277 -8.65003 -8.13247 -6.11283 -4.27779 3.23971 3.32231 3.35299 4.06418 4.33357 4.52121 4.74245 4.98628 5.02879 5.16232 5.32030 5.37632 5.54705 5.62290 5.74803 5.83930 5.90971 5.95837 6.04463 6.06456 6.17340 6.24318 6.28428 6.40206 6.54555 6.57659 6.92951 7.39779 7.45322 7.75297 8.09644 8.36215 8.83313 9.45326 10.95562 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.038547 B = 0.007430 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.211333 B = 3767.526722 C = 4250.913365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.080 3.920 3 Si 0.894 3.106 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.183 3.817 10 H 0.053 0.947 11 C 0.021 3.979 12 O -0.398 6.398 13 C 0.233 3.767 14 H 0.053 0.947 15 C -0.117 4.117 16 H 0.087 0.913 17 C -0.113 4.113 18 C -0.154 4.154 19 C 0.058 3.942 20 O -0.383 6.383 21 C 0.073 3.927 22 O -0.365 6.365 23 H 0.263 0.737 24 H 0.085 0.915 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.392 -9.308 -6.925 11.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.126 4.126 3 Si 0.721 3.279 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.588 4.588 8 H 0.082 0.918 9 C 0.127 3.873 10 H 0.070 0.930 11 C -0.055 4.055 12 O -0.320 6.320 13 C 0.137 3.863 14 H 0.070 0.930 15 C -0.136 4.136 16 H 0.105 0.895 17 C -0.151 4.151 18 C -0.191 4.191 19 C -0.019 4.019 20 O -0.301 6.301 21 C -0.003 4.003 22 O -0.286 6.286 23 H 0.073 0.927 24 H 0.103 0.897 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.129 0.871 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.146 -9.245 -6.972 11.580 hybrid contribution 1.013 0.891 0.069 1.351 sum 0.868 -8.355 -6.902 10.872 Atomic orbital electron populations 1.70041 1.06075 1.26829 1.46630 1.25066 0.94789 0.99427 0.93343 0.86520 0.80159 0.83386 0.77798 1.19591 1.20727 1.20725 1.21279 0.92829 0.90308 1.54423 0.91826 1.21112 0.88756 0.92451 0.84934 0.92961 1.24412 0.97622 0.89900 0.93582 1.89227 1.71908 1.31278 1.39541 1.23907 0.90964 0.81725 0.89719 0.92964 1.21885 0.98011 0.95718 0.98008 0.89495 1.21533 0.97293 0.97039 0.99202 1.22177 0.98984 0.98609 0.99365 1.22552 0.98951 0.87068 0.93355 1.87951 1.34629 1.41547 1.65989 1.22515 0.90889 0.94233 0.92678 1.89191 1.59638 1.43489 1.36302 0.92710 0.89675 0.91998 0.92084 0.90819 0.91205 0.91098 0.93500 0.89372 0.87144 0.93364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.15 13.05 55.43 0.72 -24.43 16 2 C 0.08 2.24 5.43 -17.81 -0.10 2.14 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.55 -15.11 8.77 -34.44 -0.30 -15.41 16 8 H 0.06 1.68 7.54 -52.49 -0.40 1.29 16 9 C 0.18 4.71 3.53 -27.12 -0.10 4.61 16 10 H 0.05 1.44 8.14 -51.93 -0.42 1.02 16 11 C 0.02 0.45 7.35 37.92 0.28 0.73 16 12 O -0.40 -8.45 11.05 -59.28 -0.66 -9.11 16 13 C 0.23 4.93 3.34 37.15 0.12 5.06 16 14 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 15 C -0.12 -2.11 2.42 -90.48 -0.22 -2.32 16 16 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 17 C -0.11 -1.65 5.15 -26.55 -0.14 -1.79 16 18 C -0.15 -1.88 6.14 -26.60 -0.16 -2.04 16 19 C 0.06 0.73 6.84 37.20 0.25 0.98 16 20 O -0.38 -6.34 10.77 -35.23 -0.38 -6.72 16 21 C 0.07 1.29 5.97 37.21 0.22 1.51 16 22 O -0.37 -9.43 10.11 -59.28 -0.60 -10.03 16 23 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 24 H 0.09 1.62 8.14 -51.93 -0.42 1.19 16 25 H 0.06 1.28 7.68 -51.93 -0.40 0.88 16 26 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.07 1.10 7.88 -51.93 -0.41 0.69 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.11 2.18 7.82 -51.93 -0.41 1.78 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 271.44 15.07 4.09 4.09 Total: -1.00 -30.10 271.44 -6.95 -37.05 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -4.97 Total: -0.24 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: -0.13 Total: -6.53 kcal Atomic # 7 Polarization: -25.15 SS G_CDS: 0.72 Total: -24.43 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -1.63 Total: -25.85 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.10 -6.95 -37.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258794251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.020 kcal (2) G-P(sol) polarization free energy of solvation -30.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds