Wall clock time and date at job start Mon Mar 30 2020 03:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86798 * 119.99746 * 2 1 4 4 H 1.48501 * 109.46818 * 180.02562 * 3 2 1 5 5 H 1.48489 * 109.47600 * 300.00464 * 3 2 1 6 6 H 1.48507 * 109.46804 * 60.00673 * 3 2 1 7 7 C 1.37878 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99884 * 359.97438 * 7 2 1 10 10 H 1.09005 * 110.28745 * 302.11280 * 9 7 2 11 11 C 1.54458 * 110.32161 * 180.02562 * 9 7 2 12 12 O 1.44833 * 102.89907 * 219.30301 * 11 9 7 13 13 C 1.44386 * 103.23474 * 36.60905 * 12 11 9 14 14 H 1.09002 * 110.11392 * 79.95560 * 13 12 11 15 15 C 1.52994 * 110.11473 * 201.53813 * 13 12 11 16 16 H 1.09001 * 109.52291 * 57.82973 * 15 13 12 17 17 C 1.53181 * 109.52597 * 297.70483 * 15 13 12 18 18 C 1.53175 * 109.03981 * 183.11398 * 17 15 13 19 19 C 1.53084 * 109.16282 * 56.97959 * 18 17 15 20 20 O 1.42906 * 109.41689 * 302.39152 * 19 18 17 21 21 C 1.42901 * 114.09990 * 61.15734 * 20 19 18 22 22 O 1.43787 * 106.22632 * 320.74610 * 13 12 11 23 23 H 0.96996 * 119.99858 * 359.97438 * 1 2 3 24 24 H 1.08994 * 110.72813 * 100.94371 * 11 9 7 25 25 H 1.09004 * 110.72259 * 337.65186 * 11 9 7 26 26 H 1.08997 * 109.53955 * 302.98035 * 17 15 13 27 27 H 1.09007 * 109.54142 * 63.15067 * 17 15 13 28 28 H 1.08999 * 109.51896 * 176.88773 * 18 17 15 29 29 H 1.08997 * 109.51905 * 297.00764 * 18 17 15 30 30 H 1.08996 * 109.48635 * 62.37358 * 19 18 17 31 31 H 1.09005 * 109.48325 * 182.39875 * 19 18 17 32 32 H 1.08994 * 109.48268 * 178.85982 * 21 20 19 33 33 H 1.09001 * 109.47556 * 58.82369 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2123 6 1 1.8904 2.3963 1.2127 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.5918 -2.5549 0.8657 11 6 2.2373 -3.6879 -0.0005 12 8 1.6029 -4.6342 -0.8948 13 6 1.0146 -3.7892 -1.9070 14 1 1.7734 -3.4829 -2.6270 15 6 -0.1170 -4.5321 -2.6200 16 1 -0.8651 -4.8429 -1.8907 17 6 0.4484 -5.7658 -3.3306 18 6 -0.6785 -6.4572 -4.1041 19 6 -1.3028 -5.4586 -5.0821 20 8 -1.7809 -4.3219 -4.3600 21 6 -0.7632 -3.6079 -3.6554 22 8 0.4941 -2.6396 -1.2179 23 1 -0.4850 0.8400 0.0004 24 1 2.3346 -4.1084 1.0003 25 1 3.2093 -3.3827 -0.3882 26 1 1.2322 -5.4600 -4.0236 27 1 0.8619 -6.4538 -2.5931 28 1 -0.2737 -7.3046 -4.6574 29 1 -1.4380 -6.8077 -3.4054 30 1 -0.5521 -5.1402 -5.8054 31 1 -2.1334 -5.9328 -5.6051 32 1 -1.2049 -2.7489 -3.1504 33 1 -0.0053 -3.2654 -4.3600 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258794251.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:30 Heat of formation + Delta-G solvation = -171.498256 kcal Electronic energy + Delta-G solvation = -16658.236373 eV Core-core repulsion = 13875.678687 eV Total energy + Delta-G solvation = -2782.557686 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.20404 -39.88355 -35.82528 -35.09674 -34.45303 -32.67674 -30.56404 -26.98838 -26.12337 -25.67412 -23.15273 -22.69252 -21.19297 -18.87566 -17.85510 -17.57971 -17.16913 -16.66839 -16.53621 -16.20179 -15.53295 -15.23208 -14.88641 -14.49783 -14.08939 -13.82630 -13.63219 -13.21792 -13.00158 -12.83431 -12.59754 -12.35995 -12.22674 -12.08831 -11.75337 -11.35281 -11.26469 -10.98745 -10.73611 -10.47363 -10.07991 -8.21297 -6.45619 1.40214 1.41331 1.53937 2.37068 2.70099 2.91298 3.08659 3.40453 3.75074 3.88767 3.99923 4.07176 4.18008 4.21768 4.25891 4.38221 4.48875 4.54053 4.65278 4.73558 4.80647 4.85822 4.92512 5.06123 5.19115 5.24661 5.37355 5.38262 5.62754 6.02992 6.22711 6.45031 6.77425 7.32313 8.86641 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.038547 B = 0.007430 C = 0.006585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.211333 B = 3767.526722 C = 4250.913365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.025 3.975 3 Si 0.967 3.033 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.567 4.567 8 H 0.072 0.928 9 C 0.172 3.828 10 H 0.019 0.981 11 C 0.031 3.969 12 O -0.395 6.395 13 C 0.228 3.772 14 H 0.059 0.941 15 C -0.111 4.111 16 H 0.065 0.935 17 C -0.108 4.108 18 C -0.147 4.147 19 C 0.048 3.952 20 O -0.400 6.400 21 C 0.082 3.918 22 O -0.395 6.395 23 H 0.264 0.736 24 H 0.110 0.890 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.104 0.896 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -10.191 -8.186 13.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.791 3.209 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.201 1.201 7 C -0.604 4.604 8 H 0.090 0.910 9 C 0.116 3.884 10 H 0.037 0.963 11 C -0.045 4.045 12 O -0.316 6.316 13 C 0.132 3.868 14 H 0.077 0.923 15 C -0.130 4.130 16 H 0.084 0.916 17 C -0.145 4.145 18 C -0.185 4.185 19 C -0.028 4.028 20 O -0.320 6.320 21 C 0.005 3.995 22 O -0.317 6.317 23 H 0.073 0.927 24 H 0.128 0.872 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.122 0.878 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.094 0.906 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.148 -10.153 -8.236 13.123 hybrid contribution 0.579 1.086 0.436 1.305 sum 1.727 -9.067 -7.800 12.084 Atomic orbital electron populations 1.70185 1.07882 1.27788 1.48020 1.25990 0.95598 1.03348 0.92852 0.85392 0.79218 0.78517 0.77782 1.18261 1.20647 1.20076 1.21659 0.93363 0.91275 1.54073 0.91034 1.21047 0.89061 0.94127 0.84120 0.96273 1.24343 0.96687 0.88372 0.95098 1.89219 1.71922 1.31002 1.39504 1.24190 0.92206 0.80944 0.89445 0.92324 1.21843 0.96489 0.97048 0.97669 0.91616 1.21529 0.98420 0.95252 0.99343 1.22163 0.97922 0.99226 0.99140 1.22902 1.00606 0.85882 0.93405 1.87925 1.34732 1.43028 1.66276 1.22246 0.91021 0.93448 0.92790 1.89134 1.60343 1.45651 1.36560 0.92678 0.87218 0.90848 0.90797 0.91006 0.87806 0.91683 0.91972 0.86773 0.90578 0.92185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.23 13.05 21.45 0.28 -53.95 16 2 C 0.02 1.39 5.43 84.65 0.46 1.85 16 3 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 4 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.57 -31.31 8.77 25.60 0.22 -31.09 16 8 H 0.07 3.74 7.54 -2.91 -0.02 3.71 16 9 C 0.17 9.08 3.53 30.34 0.11 9.18 16 10 H 0.02 1.12 8.14 -2.38 -0.02 1.10 16 11 C 0.03 1.31 7.35 72.48 0.53 1.85 16 12 O -0.40 -16.48 11.05 -125.99 -1.39 -17.87 16 13 C 0.23 9.65 3.34 71.98 0.24 9.89 16 14 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 15 C -0.11 -3.99 2.42 -10.70 -0.03 -4.01 16 16 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 17 C -0.11 -2.92 5.15 30.71 0.16 -2.76 16 18 C -0.15 -3.14 6.14 30.68 0.19 -2.96 16 19 C 0.05 1.07 6.84 72.01 0.49 1.57 16 20 O -0.40 -12.91 10.77 -148.98 -1.60 -14.51 16 21 C 0.08 2.90 5.97 72.01 0.43 3.33 16 22 O -0.40 -21.08 10.11 -125.99 -1.27 -22.35 16 23 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 24 H 0.11 4.03 8.14 -2.39 -0.02 4.01 16 25 H 0.07 2.92 7.68 -2.38 -0.02 2.91 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 27 H 0.07 1.98 7.88 -2.38 -0.02 1.96 16 28 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.11 1.99 8.14 -2.38 -0.02 1.97 16 32 H 0.08 3.18 7.82 -2.39 -0.02 3.16 16 33 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -65.77 271.44 1.92 -63.85 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.08 Total: 12.84 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 2.81 Total: -13.15 kcal Atomic # 7 Polarization: -54.23 SS G_CDS: 0.28 Total: -53.95 kcal Atomic # 8 Polarization: -50.46 SS G_CDS: -4.27 Total: -54.73 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -65.77 1.92 -63.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258794251.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.650 kcal (2) G-P(sol) polarization free energy of solvation -65.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds