Wall clock time and date at job start Mon Mar 30 2020 03:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48504 * 109.46819 * 240.00009 * 3 2 1 5 5 H 1.48500 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47047 * 119.99903 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00042 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.61656 * 298.37532 * 9 7 2 11 11 C 1.54911 * 110.69575 * 175.10706 * 9 7 2 12 12 O 1.44782 * 101.72413 * 206.03785 * 11 9 7 13 13 C 1.43757 * 104.81284 * 36.10549 * 12 11 9 14 14 H 1.09008 * 109.50828 * 95.49044 * 13 12 11 15 15 C 1.52999 * 109.63398 * 215.80692 * 13 12 11 16 16 H 1.09000 * 109.48038 * 179.34535 * 15 13 12 17 17 C 1.53095 * 109.47563 * 299.36535 * 15 13 12 18 18 C 1.53181 * 109.15940 * 177.60526 * 17 15 13 19 19 C 1.53176 * 109.03560 * 303.01673 * 18 17 15 20 20 C 1.53095 * 109.16286 * 56.98068 * 19 18 17 21 21 O 1.42895 * 109.48951 * 59.31123 * 15 13 12 22 22 O 1.43370 * 108.79257 * 335.68727 * 13 12 11 23 23 H 0.96994 * 119.99675 * 0.02562 * 1 2 3 24 24 H 1.08997 * 110.97928 * 324.15092 * 11 9 7 25 25 H 1.09010 * 110.97392 * 87.93098 * 11 9 7 26 26 H 1.08994 * 109.52897 * 57.70046 * 17 15 13 27 27 H 1.09005 * 109.57452 * 297.53307 * 17 15 13 28 28 H 1.08996 * 109.54405 * 183.15389 * 18 17 15 29 29 H 1.08999 * 109.54619 * 62.88414 * 18 17 15 30 30 H 1.09001 * 109.52789 * 176.89009 * 19 18 17 31 31 H 1.09007 * 109.52321 * 297.07724 * 19 18 17 32 32 H 1.08995 * 109.48092 * 62.37615 * 20 19 18 33 33 H 1.09004 * 109.48253 * 182.40879 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6390 -2.5890 0.8980 11 6 2.2279 -3.6952 -0.1224 12 8 1.3835 -4.7036 -0.7276 13 6 0.5339 -3.9773 -1.6316 14 1 0.9615 -4.0040 -2.6339 15 6 -0.8585 -4.6113 -1.6499 16 1 -1.5038 -4.0518 -2.3271 17 6 -0.7526 -6.0620 -2.1276 18 6 -2.1411 -6.7076 -2.0861 19 6 -2.6982 -6.6034 -0.6631 20 6 -2.7288 -5.1318 -0.2419 21 8 -1.4120 -4.5842 -0.3328 22 8 0.4385 -2.6184 -1.1847 23 1 -0.4849 0.8400 -0.0004 24 1 3.0676 -3.4482 -0.7720 25 1 2.5771 -4.0164 0.8590 26 1 -0.0754 -6.6122 -1.4743 27 1 -0.3714 -6.0833 -3.1486 28 1 -2.0640 -7.7567 -2.3715 29 1 -2.8055 -6.1883 -2.7767 30 1 -3.7088 -7.0109 -0.6367 31 1 -2.0602 -7.1645 0.0199 32 1 -3.3986 -4.5791 -0.9006 33 1 -3.0843 -5.0551 0.7857 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258818657.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:55 Heat of formation + Delta-G solvation = -145.533557 kcal Electronic energy + Delta-G solvation = -16837.252064 eV Core-core repulsion = 14055.820292 eV Total energy + Delta-G solvation = -2781.431772 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.52819 -38.13344 -33.81904 -33.26838 -32.58506 -31.43218 -28.77079 -25.77661 -24.51094 -23.59605 -21.43090 -20.99769 -19.85557 -16.82825 -16.23810 -15.98830 -15.41682 -15.01070 -14.64337 -14.27853 -14.13234 -13.75800 -13.26072 -12.61069 -12.38935 -12.22571 -12.03994 -11.83551 -11.21625 -11.00996 -10.88911 -10.85349 -10.69581 -10.50914 -10.20529 -10.03476 -9.31026 -9.02033 -8.95828 -8.58579 -8.01833 -6.03437 -4.19864 3.31075 3.35627 3.37629 4.21615 4.38441 4.59138 4.82268 4.98669 5.05860 5.16265 5.29979 5.49633 5.56963 5.73503 5.75927 5.91373 5.96040 6.00506 6.07648 6.13528 6.23244 6.26009 6.26446 6.41170 6.50790 6.61596 6.84663 7.56438 7.77158 7.84434 8.19053 8.50703 8.91616 9.51663 11.03373 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.046720 B = 0.007416 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.166222 B = 3774.713059 C = 4076.362791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.080 3.920 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.066 0.934 9 C 0.194 3.806 10 H 0.044 0.956 11 C 0.021 3.979 12 O -0.392 6.392 13 C 0.233 3.767 14 H 0.072 0.928 15 C 0.084 3.916 16 H 0.065 0.935 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.155 4.155 20 C 0.059 3.941 21 O -0.352 6.352 22 O -0.357 6.357 23 H 0.263 0.737 24 H 0.060 0.940 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.543 -10.582 -3.076 11.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.127 4.127 3 Si 0.722 3.278 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.139 3.861 10 H 0.062 0.938 11 C -0.055 4.055 12 O -0.313 6.313 13 C 0.136 3.864 14 H 0.089 0.911 15 C 0.025 3.975 16 H 0.082 0.918 17 C -0.185 4.185 18 C -0.157 4.157 19 C -0.193 4.193 20 C -0.019 4.019 21 O -0.270 6.270 22 O -0.278 6.278 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.105 0.895 26 H 0.097 0.903 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.740 -10.455 -2.968 11.494 hybrid contribution 0.298 0.751 -0.305 0.863 sum -3.442 -9.704 -3.273 10.805 Atomic orbital electron populations 1.70061 1.06044 1.26827 1.46244 1.25078 0.94800 0.99382 0.93467 0.86625 0.79656 0.82724 0.78758 1.20033 1.21106 1.19976 1.20983 0.92715 0.89863 1.54667 0.91611 1.21235 0.86709 0.92592 0.85570 0.93809 1.24526 0.94844 0.88663 0.97471 1.89028 1.50761 1.32057 1.59466 1.23812 0.87579 0.82073 0.92899 0.91117 1.22664 0.95056 0.94316 0.85443 0.91756 1.22123 0.97485 0.97074 1.01855 1.21567 0.96769 1.00600 0.96786 1.22202 1.01173 0.98502 0.97433 1.22515 0.85753 0.92028 1.01583 1.88137 1.29403 1.81646 1.27792 1.89222 1.71285 1.21403 1.45853 0.92735 0.92152 0.89522 0.90294 0.91327 0.91884 0.92126 0.91517 0.91174 0.93709 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.78 12.95 55.43 0.72 -25.06 16 2 C 0.08 2.27 5.42 -17.82 -0.10 2.18 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.55 -15.43 8.83 -34.44 -0.30 -15.73 16 8 H 0.07 1.77 7.78 -52.49 -0.41 1.36 16 9 C 0.19 5.23 3.51 -26.87 -0.09 5.14 16 10 H 0.04 1.30 8.14 -51.93 -0.42 0.87 16 11 C 0.02 0.47 7.37 38.17 0.28 0.75 16 12 O -0.39 -8.66 10.57 -63.55 -0.67 -9.33 16 13 C 0.23 5.14 3.79 37.16 0.14 5.28 16 14 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 15 C 0.08 1.60 2.74 -26.68 -0.07 1.53 16 16 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 17 C -0.15 -2.24 5.31 -26.59 -0.14 -2.38 16 18 C -0.12 -1.50 6.03 -26.55 -0.16 -1.66 16 19 C -0.16 -1.99 6.14 -26.59 -0.16 -2.15 16 20 C 0.06 0.92 6.84 37.21 0.25 1.17 16 21 O -0.35 -7.32 10.19 -55.40 -0.56 -7.89 16 22 O -0.36 -9.72 10.36 -63.44 -0.66 -10.37 16 23 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 24 H 0.06 1.29 8.04 -51.93 -0.42 0.88 16 25 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 26 H 0.08 1.29 7.64 -51.93 -0.40 0.89 16 27 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.07 0.93 8.14 -51.92 -0.42 0.51 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 272.23 15.07 4.10 4.10 Total: -1.00 -31.85 272.23 -7.46 -39.31 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -5.01 Total: -1.18 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -0.36 Total: -5.87 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.72 Total: -25.06 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -1.89 Total: -27.59 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.85 -7.46 -39.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258818657.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.222 kcal (2) G-P(sol) polarization free energy of solvation -31.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds