Wall clock time and date at job start Mon Mar 30 2020 03:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86799 * 119.99807 * 2 1 4 4 H 1.48504 * 109.46819 * 240.00009 * 3 2 1 5 5 H 1.48500 * 109.47186 * 359.97438 * 3 2 1 6 6 H 1.48491 * 109.47047 * 119.99903 * 3 2 1 7 7 C 1.37877 * 120.00069 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00180 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00042 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.61656 * 298.37532 * 9 7 2 11 11 C 1.54911 * 110.69575 * 175.10706 * 9 7 2 12 12 O 1.44782 * 101.72413 * 206.03785 * 11 9 7 13 13 C 1.43757 * 104.81284 * 36.10549 * 12 11 9 14 14 H 1.09008 * 109.50828 * 95.49044 * 13 12 11 15 15 C 1.52999 * 109.63398 * 215.80692 * 13 12 11 16 16 H 1.09000 * 109.48038 * 179.34535 * 15 13 12 17 17 C 1.53095 * 109.47563 * 299.36535 * 15 13 12 18 18 C 1.53181 * 109.15940 * 177.60526 * 17 15 13 19 19 C 1.53176 * 109.03560 * 303.01673 * 18 17 15 20 20 C 1.53095 * 109.16286 * 56.98068 * 19 18 17 21 21 O 1.42895 * 109.48951 * 59.31123 * 15 13 12 22 22 O 1.43370 * 108.79257 * 335.68727 * 13 12 11 23 23 H 0.96994 * 119.99675 * 0.02562 * 1 2 3 24 24 H 1.08997 * 110.97928 * 324.15092 * 11 9 7 25 25 H 1.09010 * 110.97392 * 87.93098 * 11 9 7 26 26 H 1.08994 * 109.52897 * 57.70046 * 17 15 13 27 27 H 1.09005 * 109.57452 * 297.53307 * 17 15 13 28 28 H 1.08996 * 109.54405 * 183.15389 * 18 17 15 29 29 H 1.08999 * 109.54619 * 62.88414 * 18 17 15 30 30 H 1.09001 * 109.52789 * 176.89009 * 19 18 17 31 31 H 1.09007 * 109.52321 * 297.07724 * 19 18 17 32 32 H 1.08995 * 109.48092 * 62.37615 * 20 19 18 33 33 H 1.09004 * 109.48253 * 182.40879 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6964 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0005 10 1 0.6390 -2.5890 0.8980 11 6 2.2279 -3.6952 -0.1224 12 8 1.3835 -4.7036 -0.7276 13 6 0.5339 -3.9773 -1.6316 14 1 0.9615 -4.0040 -2.6339 15 6 -0.8585 -4.6113 -1.6499 16 1 -1.5038 -4.0518 -2.3271 17 6 -0.7526 -6.0620 -2.1276 18 6 -2.1411 -6.7076 -2.0861 19 6 -2.6982 -6.6034 -0.6631 20 6 -2.7288 -5.1318 -0.2419 21 8 -1.4120 -4.5842 -0.3328 22 8 0.4385 -2.6184 -1.1847 23 1 -0.4849 0.8400 -0.0004 24 1 3.0676 -3.4482 -0.7720 25 1 2.5771 -4.0164 0.8590 26 1 -0.0754 -6.6122 -1.4743 27 1 -0.3714 -6.0833 -3.1486 28 1 -2.0640 -7.7567 -2.3715 29 1 -2.8055 -6.1883 -2.7767 30 1 -3.7088 -7.0109 -0.6367 31 1 -2.0602 -7.1645 0.0199 32 1 -3.3986 -4.5791 -0.9006 33 1 -3.0843 -5.0551 0.7857 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258818657.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:55 Heat of formation + Delta-G solvation = -167.076431 kcal Electronic energy + Delta-G solvation = -16838.186233 eV Core-core repulsion = 14055.820292 eV Total energy + Delta-G solvation = -2782.365941 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.18796 -39.66829 -35.76015 -34.65567 -34.48861 -32.94462 -30.61212 -27.39747 -26.39771 -24.85124 -23.17440 -22.77030 -21.07759 -18.90396 -17.90496 -17.66607 -17.07631 -16.57727 -16.46579 -15.77426 -15.49043 -15.20865 -14.86052 -14.38870 -14.10810 -13.69672 -13.59017 -13.47932 -13.03757 -12.74807 -12.41106 -12.37143 -12.20872 -12.00801 -11.79932 -11.35088 -11.22886 -10.85338 -10.67382 -10.38637 -9.96017 -8.18879 -6.44081 1.41793 1.45521 1.53388 2.38796 2.78657 2.84341 3.08561 3.47054 3.87371 3.94237 4.00517 4.10034 4.25196 4.26376 4.27900 4.45533 4.53064 4.57881 4.63328 4.73474 4.87105 4.94194 4.98878 5.08213 5.13772 5.18393 5.41825 5.44173 5.65963 6.06015 6.41000 6.50911 6.82472 7.33019 8.89108 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.046720 B = 0.007416 C = 0.006867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.166222 B = 3774.713059 C = 4076.362791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.022 3.978 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.565 4.565 8 H 0.077 0.923 9 C 0.187 3.813 10 H 0.001 0.999 11 C 0.032 3.968 12 O -0.390 6.390 13 C 0.220 3.780 14 H 0.091 0.909 15 C 0.083 3.917 16 H 0.061 0.939 17 C -0.139 4.139 18 C -0.116 4.116 19 C -0.148 4.148 20 C 0.047 3.953 21 O -0.396 6.396 22 O -0.391 6.391 23 H 0.264 0.736 24 H 0.074 0.926 25 H 0.107 0.893 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.113 -11.471 -3.930 12.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.181 4.181 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.602 4.602 8 H 0.095 0.905 9 C 0.132 3.868 10 H 0.019 0.981 11 C -0.044 4.044 12 O -0.311 6.311 13 C 0.124 3.876 14 H 0.108 0.892 15 C 0.024 3.976 16 H 0.079 0.921 17 C -0.177 4.177 18 C -0.154 4.154 19 C -0.186 4.186 20 C -0.029 4.029 21 O -0.315 6.315 22 O -0.312 6.312 23 H 0.072 0.928 24 H 0.092 0.908 25 H 0.125 0.875 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.089 0.911 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.303 -11.371 -3.824 12.443 hybrid contribution 0.114 0.978 -0.028 0.985 sum -3.189 -10.393 -3.852 11.534 Atomic orbital electron populations 1.70226 1.08004 1.27808 1.47608 1.26067 0.95661 1.03562 0.92788 0.85424 0.78227 0.77428 0.79391 1.19104 1.20861 1.18557 1.21421 0.93472 0.90808 1.54521 0.90467 1.21067 0.87050 0.94397 0.84259 0.98115 1.24430 0.94036 0.86936 0.99003 1.89014 1.50802 1.31702 1.59575 1.24248 0.89694 0.80302 0.93315 0.89207 1.22657 0.93061 0.96746 0.85100 0.92090 1.22061 0.99300 0.93987 1.02329 1.21598 0.94988 1.02038 0.96742 1.22154 1.02952 0.95963 0.97486 1.22793 0.83667 0.94147 1.02284 1.88063 1.31866 1.82827 1.28790 1.89131 1.71778 1.24645 1.45689 0.92760 0.90766 0.87460 0.91551 0.89379 0.89148 0.91097 0.88425 0.91760 0.93313 0.88853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.75 12.95 21.45 0.28 -55.47 16 2 C 0.02 1.27 5.42 84.65 0.46 1.73 16 3 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 6 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 7 C -0.57 -32.39 8.83 25.60 0.23 -32.17 16 8 H 0.08 4.11 7.78 -2.91 -0.02 4.09 16 9 C 0.19 10.43 3.51 30.50 0.11 10.53 16 10 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 11 C 0.03 1.43 7.37 72.64 0.54 1.96 16 12 O -0.39 -17.12 10.57 -121.91 -1.29 -18.41 16 13 C 0.22 9.76 3.79 71.98 0.27 10.03 16 14 H 0.09 3.55 8.14 -2.38 -0.02 3.54 16 15 C 0.08 3.16 2.74 30.63 0.08 3.24 16 16 H 0.06 2.31 8.14 -2.39 -0.02 2.30 16 17 C -0.14 -3.95 5.31 30.69 0.16 -3.79 16 18 C -0.12 -2.56 6.03 30.71 0.19 -2.38 16 19 C -0.15 -3.45 6.14 30.69 0.19 -3.26 16 20 C 0.05 1.47 6.84 72.01 0.49 1.96 16 21 O -0.40 -16.84 10.19 -129.70 -1.32 -18.16 16 22 O -0.39 -21.92 10.36 -122.01 -1.26 -23.19 16 23 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 24 H 0.07 3.10 8.04 -2.39 -0.02 3.08 16 25 H 0.11 4.27 8.14 -2.38 -0.02 4.25 16 26 H 0.07 2.06 7.64 -2.39 -0.02 2.04 16 27 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.09 2.70 8.14 -2.39 -0.02 2.68 16 Total: -1.00 -70.49 272.23 2.22 -68.27 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 1.08 Total: 13.15 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 2.71 Total: -12.14 kcal Atomic # 7 Polarization: -55.75 SS G_CDS: 0.28 Total: -55.47 kcal Atomic # 8 Polarization: -55.88 SS G_CDS: -3.87 Total: -59.75 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -70.49 2.22 -68.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258818657.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.808 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds