Wall clock time and date at job start Mon Mar 30 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.62827 * 2 1 4 4 H 1.08998 * 110.75347 * 301.22821 * 3 2 1 5 5 C 1.55305 * 110.84826 * 64.70241 * 3 2 1 6 6 C 1.54943 * 100.98387 * 152.30216 * 5 3 2 7 7 O 1.43695 * 105.10992 * 323.61001 * 6 5 3 8 8 C 1.43235 * 109.99506 * 24.36442 * 7 6 5 9 9 O 1.43367 * 109.62930 * 239.60811 * 2 1 3 10 10 C 1.44190 * 107.29244 * 240.93870 * 9 2 1 11 11 C 1.54920 * 103.07379 * 21.43940 * 10 9 2 12 12 H 1.08996 * 110.97946 * 82.54959 * 11 10 9 13 13 C 1.50700 * 110.97638 * 206.29694 * 11 10 9 14 14 H 1.08003 * 119.99909 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99996 * 179.97438 * 13 11 10 16 16 N 1.31513 * 119.99726 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99956 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46801 * 89.99902 * 17 15 13 19 19 H 1.48501 * 109.47193 * 210.00153 * 17 15 13 20 20 H 1.48501 * 109.46910 * 330.00140 * 17 15 13 21 21 O 1.43755 * 109.50926 * 120.32320 * 2 1 3 22 22 H 1.09001 * 109.47157 * 54.33243 * 1 2 3 23 23 H 1.09004 * 109.47191 * 174.33264 * 1 2 3 24 24 H 1.08997 * 109.46758 * 294.33129 * 1 2 3 25 25 H 1.09012 * 111.11998 * 270.24089 * 5 3 2 26 26 H 1.09001 * 111.12731 * 34.35256 * 5 3 2 27 27 H 1.08997 * 110.31258 * 82.49181 * 6 5 3 28 28 H 1.09005 * 110.30833 * 204.66230 * 6 5 3 29 29 H 1.08996 * 109.83002 * 238.81346 * 8 7 6 30 30 H 1.08996 * 109.90823 * 117.87715 * 8 7 6 31 31 H 1.08996 * 110.69813 * 139.83420 * 10 9 2 32 32 H 1.09001 * 110.69748 * 262.87042 * 10 9 2 33 33 H 0.97002 * 119.99468 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4410 0.0000 4 1 1.6760 1.9823 -0.8716 5 6 1.6455 2.1700 1.3122 6 6 2.7874 3.2105 1.4304 7 8 3.9608 2.5351 0.9488 8 6 3.5862 1.4743 0.0622 9 8 2.0116 -0.6832 -1.1648 10 6 2.7855 -1.8118 -0.7104 11 6 2.2599 -2.0404 0.7289 12 1 1.3393 -2.6238 0.7201 13 6 3.3070 -2.7029 1.5866 14 1 4.2710 -2.9506 1.1673 15 6 3.0343 -2.9930 2.9067 16 7 1.8602 -2.6919 3.4170 17 14 4.3319 -3.8149 3.9697 18 1 5.1632 -2.7755 4.6283 19 1 3.6688 -4.6479 5.0050 20 1 5.1952 -4.6747 3.1208 21 8 2.0101 -0.6841 1.1696 22 1 -0.3633 0.5992 -0.8349 23 1 -0.3634 -1.0227 -0.1015 24 1 -0.3633 0.4234 0.9364 25 1 0.6768 2.6596 1.2109 26 1 1.6495 1.4842 2.1594 27 1 2.5716 4.0812 0.8113 28 1 2.9215 3.5085 2.4703 29 1 3.9615 0.5244 0.4428 30 1 3.9924 1.6607 -0.9319 31 1 2.5948 -2.6856 -1.3334 32 1 3.8486 -1.5714 -0.7015 33 1 1.6682 -2.8963 4.3456 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258897627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:30 Heat of formation + Delta-G solvation = -141.883573 kcal Electronic energy + Delta-G solvation = -17193.207411 eV Core-core repulsion = 14411.933914 eV Total energy + Delta-G solvation = -2781.273497 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.93934 -38.18865 -33.93976 -33.32781 -32.11134 -29.74767 -28.56804 -27.93461 -24.79793 -22.37871 -22.00788 -21.16057 -19.52468 -17.05000 -16.26715 -15.95567 -15.64605 -14.94169 -14.58353 -14.30695 -13.91094 -13.24436 -12.86080 -12.70385 -12.35938 -12.16589 -12.14737 -11.64244 -11.24886 -11.10691 -11.00204 -10.93275 -10.70212 -10.55287 -10.38101 -10.14277 -9.35628 -9.14076 -8.89579 -8.73790 -8.33712 -6.18437 -4.32926 3.24980 3.31738 3.33771 4.23120 4.29424 4.41073 4.80508 4.92711 5.25938 5.28616 5.41833 5.53087 5.65379 5.76090 5.87052 6.00941 6.06815 6.10393 6.13318 6.16208 6.23260 6.36738 6.49554 6.54609 6.64989 6.74181 6.85214 7.33289 7.40385 7.72608 8.04015 8.38326 8.76465 9.39555 10.89576 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.010103 C = 0.008922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.787368 B = 2770.886223 C = 3137.442852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.252 3.748 3 C -0.119 4.119 4 H 0.084 0.916 5 C -0.145 4.145 6 C 0.054 3.946 7 O -0.388 6.388 8 C 0.063 3.937 9 O -0.400 6.400 10 C 0.022 3.978 11 C 0.185 3.815 12 H 0.043 0.957 13 C -0.533 4.533 14 H 0.068 0.932 15 C 0.080 3.920 16 N -0.862 5.862 17 Si 0.898 3.102 18 H -0.276 1.276 19 H -0.284 1.284 20 H -0.271 1.271 21 O -0.350 6.350 22 H 0.055 0.945 23 H 0.061 0.939 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.079 0.921 32 H 0.063 0.937 33 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.552 6.942 -4.921 8.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.174 3.826 3 C -0.138 4.138 4 H 0.103 0.897 5 C -0.182 4.182 6 C -0.023 4.023 7 O -0.307 6.307 8 C -0.013 4.013 9 O -0.322 6.322 10 C -0.054 4.054 11 C 0.130 3.870 12 H 0.061 0.939 13 C -0.570 4.570 14 H 0.086 0.914 15 C -0.127 4.127 16 N -0.498 5.498 17 Si 0.725 3.275 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.195 1.195 21 O -0.271 6.271 22 H 0.074 0.926 23 H 0.080 0.920 24 H 0.088 0.912 25 H 0.094 0.906 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.081 0.919 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.476 7.129 -4.706 8.669 hybrid contribution 0.296 -0.562 0.497 0.807 sum -1.180 6.567 -4.209 7.889 Atomic orbital electron populations 1.22297 0.95311 1.02634 1.01683 1.22892 0.91915 0.89591 0.78216 1.22971 0.96382 0.95980 0.98497 0.89735 1.23254 0.98290 0.97974 0.98731 1.23305 0.85179 0.94648 0.99136 1.88350 1.30126 1.47729 1.64530 1.23080 0.93626 0.91611 0.92978 1.88699 1.69979 1.42818 1.30666 1.24354 0.95533 0.87501 0.98040 1.21450 0.96283 0.81101 0.88172 0.93920 1.20855 1.00306 1.39528 0.96331 0.91367 1.25071 0.95405 0.94237 0.97974 1.70012 1.21021 1.44436 1.14314 0.86507 0.81524 0.79408 0.80100 1.20222 1.20985 1.19545 1.89586 1.84671 1.24609 1.28188 0.92603 0.91982 0.91186 0.90576 0.88459 0.93002 0.90155 0.89616 0.92272 0.90297 0.91894 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 8.93 37.16 0.33 -2.58 16 2 C 0.25 5.14 0.72 -26.73 -0.02 5.12 16 3 C -0.12 -2.12 2.64 -88.67 -0.23 -2.35 16 4 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 5 C -0.14 -2.37 5.74 -24.48 -0.14 -2.51 16 6 C 0.05 0.83 7.78 38.18 0.30 1.13 16 7 O -0.39 -7.39 11.36 -35.23 -0.40 -7.79 16 8 C 0.06 1.20 7.07 37.89 0.27 1.47 16 9 O -0.40 -8.32 10.62 -59.04 -0.63 -8.95 16 10 C 0.02 0.47 7.33 38.17 0.28 0.75 16 11 C 0.18 4.65 3.21 -26.87 -0.09 4.57 16 12 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 13 C -0.53 -14.46 8.84 -34.44 -0.30 -14.77 16 14 H 0.07 1.79 7.76 -52.48 -0.41 1.38 16 15 C 0.08 2.20 5.46 -17.82 -0.10 2.10 16 16 N -0.86 -24.71 13.21 55.43 0.73 -23.98 16 17 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 O -0.35 -8.67 8.76 -59.04 -0.52 -9.18 16 22 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 24 H 0.07 1.22 7.64 -51.93 -0.40 0.83 16 25 H 0.08 1.03 8.14 -51.92 -0.42 0.60 16 26 H 0.10 1.88 7.27 -51.93 -0.38 1.51 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.88 6.94 -51.93 -0.36 1.52 16 30 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.06 1.32 7.98 -51.93 -0.41 0.91 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 271.69 15.07 4.09 4.09 Total: -1.00 -29.54 271.69 -6.34 -35.88 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -4.90 Total: 1.14 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: 0.29 Total: -7.08 kcal Atomic # 7 Polarization: -24.71 SS G_CDS: 0.73 Total: -23.98 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -1.54 Total: -25.92 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.54 -6.34 -35.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258897627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.009 kcal (2) G-P(sol) polarization free energy of solvation -29.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds