Wall clock time and date at job start Mon Mar 30 2020 03:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.62827 * 2 1 4 4 H 1.08998 * 110.75347 * 301.22821 * 3 2 1 5 5 C 1.55305 * 110.84826 * 64.70241 * 3 2 1 6 6 C 1.54943 * 100.98387 * 152.30216 * 5 3 2 7 7 O 1.43695 * 105.10992 * 323.61001 * 6 5 3 8 8 C 1.43235 * 109.99506 * 24.36442 * 7 6 5 9 9 O 1.43367 * 109.62930 * 239.60811 * 2 1 3 10 10 C 1.44190 * 107.29244 * 240.93870 * 9 2 1 11 11 C 1.54920 * 103.07379 * 21.43940 * 10 9 2 12 12 H 1.08996 * 110.97946 * 82.54959 * 11 10 9 13 13 C 1.50700 * 110.97638 * 206.29694 * 11 10 9 14 14 H 1.08003 * 119.99909 * 359.97438 * 13 11 10 15 15 C 1.37879 * 119.99996 * 179.97438 * 13 11 10 16 16 N 1.31513 * 119.99726 * 0.02562 * 15 13 11 17 17 Si 1.86802 * 119.99956 * 179.97438 * 15 13 11 18 18 H 1.48495 * 109.46801 * 89.99902 * 17 15 13 19 19 H 1.48501 * 109.47193 * 210.00153 * 17 15 13 20 20 H 1.48501 * 109.46910 * 330.00140 * 17 15 13 21 21 O 1.43755 * 109.50926 * 120.32320 * 2 1 3 22 22 H 1.09001 * 109.47157 * 54.33243 * 1 2 3 23 23 H 1.09004 * 109.47191 * 174.33264 * 1 2 3 24 24 H 1.08997 * 109.46758 * 294.33129 * 1 2 3 25 25 H 1.09012 * 111.11998 * 270.24089 * 5 3 2 26 26 H 1.09001 * 111.12731 * 34.35256 * 5 3 2 27 27 H 1.08997 * 110.31258 * 82.49181 * 6 5 3 28 28 H 1.09005 * 110.30833 * 204.66230 * 6 5 3 29 29 H 1.08996 * 109.83002 * 238.81346 * 8 7 6 30 30 H 1.08996 * 109.90823 * 117.87715 * 8 7 6 31 31 H 1.08996 * 110.69813 * 139.83420 * 10 9 2 32 32 H 1.09001 * 110.69748 * 262.87042 * 10 9 2 33 33 H 0.97002 * 119.99468 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4410 0.0000 4 1 1.6760 1.9823 -0.8716 5 6 1.6455 2.1700 1.3122 6 6 2.7874 3.2105 1.4304 7 8 3.9608 2.5351 0.9488 8 6 3.5862 1.4743 0.0622 9 8 2.0116 -0.6832 -1.1648 10 6 2.7855 -1.8118 -0.7104 11 6 2.2599 -2.0404 0.7289 12 1 1.3393 -2.6238 0.7201 13 6 3.3070 -2.7029 1.5866 14 1 4.2710 -2.9506 1.1673 15 6 3.0343 -2.9930 2.9067 16 7 1.8602 -2.6919 3.4170 17 14 4.3319 -3.8149 3.9697 18 1 5.1632 -2.7755 4.6283 19 1 3.6688 -4.6479 5.0050 20 1 5.1952 -4.6747 3.1208 21 8 2.0101 -0.6841 1.1696 22 1 -0.3633 0.5992 -0.8349 23 1 -0.3634 -1.0227 -0.1015 24 1 -0.3633 0.4234 0.9364 25 1 0.6768 2.6596 1.2109 26 1 1.6495 1.4842 2.1594 27 1 2.5716 4.0812 0.8113 28 1 2.9215 3.5085 2.4703 29 1 3.9615 0.5244 0.4428 30 1 3.9924 1.6607 -0.9319 31 1 2.5948 -2.6856 -1.3334 32 1 3.8486 -1.5714 -0.7015 33 1 1.6682 -2.8963 4.3456 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258897627.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:30 Heat of formation + Delta-G solvation = -161.860065 kcal Electronic energy + Delta-G solvation = -17194.073657 eV Core-core repulsion = 14411.933914 eV Total energy + Delta-G solvation = -2782.139742 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.55177 -39.68235 -35.77575 -35.04596 -33.91807 -31.27812 -30.00024 -29.67606 -26.73753 -23.88448 -23.43551 -22.94076 -21.05087 -19.01068 -17.81402 -17.54576 -17.30799 -16.54640 -16.45666 -15.76751 -15.52416 -14.90911 -14.42987 -14.25804 -14.17706 -13.88452 -13.57800 -13.23904 -12.92937 -12.83900 -12.61907 -12.39820 -12.34695 -12.22495 -11.92678 -11.77010 -11.21940 -10.85893 -10.65576 -10.42242 -10.16906 -8.26426 -6.47669 1.39408 1.41610 1.51436 2.35035 2.70540 2.87722 3.06474 3.41906 3.59668 3.86665 3.96580 4.20147 4.26321 4.34007 4.34460 4.37775 4.49211 4.59406 4.72065 4.80580 4.82766 4.90464 4.91405 5.01272 5.11472 5.24084 5.29496 5.42876 5.62674 6.02622 6.04469 6.52770 6.75525 7.28694 8.82410 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.027000 B = 0.010103 C = 0.008922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.787368 B = 2770.886223 C = 3137.442852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.239 3.761 3 C -0.116 4.116 4 H 0.116 0.884 5 C -0.140 4.140 6 C 0.050 3.950 7 O -0.410 6.410 8 C 0.066 3.934 9 O -0.398 6.398 10 C 0.033 3.967 11 C 0.179 3.821 12 H 0.014 0.986 13 C -0.553 4.553 14 H 0.071 0.929 15 C 0.028 3.972 16 N -0.899 5.899 17 Si 0.964 3.036 18 H -0.278 1.278 19 H -0.278 1.278 20 H -0.258 1.258 21 O -0.376 6.376 22 H 0.089 0.911 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.111 0.889 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.077 0.923 31 H 0.100 0.900 32 H 0.064 0.936 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.455 8.168 -5.690 10.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.162 3.838 3 C -0.135 4.135 4 H 0.134 0.866 5 C -0.177 4.177 6 C -0.025 4.025 7 O -0.331 6.331 8 C -0.011 4.011 9 O -0.320 6.320 10 C -0.043 4.043 11 C 0.124 3.876 12 H 0.032 0.968 13 C -0.590 4.590 14 H 0.089 0.911 15 C -0.175 4.175 16 N -0.536 5.536 17 Si 0.788 3.212 18 H -0.204 1.204 19 H -0.203 1.203 20 H -0.182 1.182 21 O -0.297 6.297 22 H 0.108 0.892 23 H 0.063 0.937 24 H 0.091 0.909 25 H 0.129 0.871 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.095 0.905 31 H 0.118 0.882 32 H 0.082 0.918 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.380 8.359 -5.488 10.094 hybrid contribution 0.228 -0.886 0.705 1.155 sum -1.152 7.473 -4.783 8.947 Atomic orbital electron populations 1.22271 0.93559 1.02360 1.03279 1.23334 0.93305 0.90532 0.76637 1.23029 0.95498 0.94493 1.00469 0.86570 1.23206 1.00572 0.97537 0.96430 1.23568 0.83480 0.94981 1.00514 1.88318 1.32122 1.47821 1.64804 1.22964 0.94572 0.90127 0.93423 1.88671 1.69994 1.42584 1.30756 1.24215 0.95504 0.88512 0.96072 1.21278 0.94793 0.81266 0.90260 0.96845 1.21239 1.00799 1.39900 0.97041 0.91079 1.25924 0.97400 0.94845 0.99322 1.70131 1.22915 1.45863 1.14649 0.85472 0.78902 0.78429 0.78373 1.20364 1.20303 1.18233 1.89517 1.85286 1.24327 1.30575 0.89208 0.93656 0.90891 0.87104 0.92346 0.89496 0.89206 0.93605 0.90533 0.88218 0.91772 0.92553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.46 8.93 71.98 0.64 -4.82 16 2 C 0.24 9.58 0.72 30.59 0.02 9.60 16 3 C -0.12 -3.88 2.64 -9.53 -0.03 -3.91 16 4 H 0.12 3.19 8.14 -2.39 -0.02 3.17 16 5 C -0.14 -4.29 5.74 32.05 0.18 -4.11 16 6 C 0.05 1.42 7.78 72.65 0.57 1.99 16 7 O -0.41 -15.10 11.36 -148.98 -1.69 -16.79 16 8 C 0.07 2.42 7.07 72.45 0.51 2.94 16 9 O -0.40 -16.15 10.62 -126.22 -1.34 -17.49 16 10 C 0.03 1.41 7.33 72.64 0.53 1.95 16 11 C 0.18 9.27 3.21 30.50 0.10 9.37 16 12 H 0.01 0.78 8.14 -2.39 -0.02 0.76 16 13 C -0.55 -30.63 8.84 25.60 0.23 -30.40 16 14 H 0.07 3.77 7.76 -2.91 -0.02 3.75 16 15 C 0.03 1.57 5.46 84.66 0.46 2.04 16 16 N -0.90 -52.89 13.21 21.45 0.28 -52.60 16 17 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 O -0.38 -19.06 8.76 -126.22 -1.11 -20.17 16 22 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 23 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 24 H 0.07 2.47 7.64 -2.39 -0.02 2.45 16 25 H 0.11 2.59 8.14 -2.38 -0.02 2.57 16 26 H 0.06 2.26 7.27 -2.39 -0.02 2.24 16 27 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 29 H 0.05 2.05 6.94 -2.39 -0.02 2.03 16 30 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 32 H 0.06 2.71 7.98 -2.39 -0.02 2.69 16 33 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -64.75 271.69 2.47 -62.28 By element: Atomic # 1 Polarization: 13.69 SS G_CDS: 1.08 Total: 14.77 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 3.22 Total: -15.36 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.28 Total: -52.60 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: -4.14 Total: -54.45 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -64.75 2.47 -62.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258897627.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.581 kcal (2) G-P(sol) polarization free energy of solvation -64.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds