Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31048 * 1 3 3 Si 1.86801 * 119.99489 * 2 1 4 4 H 1.48497 * 109.46957 * 275.41326 * 3 2 1 5 5 H 1.48505 * 109.47379 * 35.41432 * 3 2 1 6 6 H 1.48500 * 109.47125 * 155.41440 * 3 2 1 7 7 C 1.39748 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 336.19137 * 7 2 1 9 9 C 1.40877 * 119.99930 * 156.18416 * 7 2 1 10 10 C 1.47513 * 126.95218 * 321.94703 * 9 7 2 11 11 C 1.38881 * 134.69034 * 359.97438 * 10 9 7 12 12 N 1.31847 * 120.19732 * 180.02562 * 11 10 9 13 13 C 1.32218 * 122.10325 * 359.97438 * 12 11 10 14 14 C 1.37845 * 121.43782 * 0.22204 * 13 12 11 15 15 C 1.39356 * 118.90514 * 359.57566 * 14 13 12 16 16 N 1.37512 * 133.98665 * 180.09590 * 15 14 13 17 17 H 0.97000 * 124.68384 * 0.25438 * 16 15 14 18 18 C 1.35781 * 110.64076 * 180.29515 * 16 15 14 19 19 C 1.50697 * 125.35227 * 179.97438 * 18 16 15 20 20 C 1.52999 * 117.50256 * 8.64887 * 19 18 16 21 21 C 1.53002 * 117.50274 * 300.02302 * 19 18 16 22 22 H 0.96994 * 120.00491 * 0.02562 * 1 2 3 23 23 H 1.07994 * 119.90633 * 0.02618 * 11 10 9 24 24 H 1.07996 * 119.28155 * 179.97438 * 13 12 11 25 25 H 1.08001 * 120.54300 * 179.70502 * 14 13 12 26 26 H 1.09004 * 115.54540 * 154.35944 * 19 18 16 27 27 H 1.09000 * 117.49674 * 0.02562 * 20 19 18 28 28 H 1.09000 * 117.49616 * 145.01695 * 20 19 18 29 29 H 1.08998 * 117.50059 * 214.97812 * 21 19 18 30 30 H 1.08995 * 117.49671 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 2.3774 2.1125 -1.3938 5 1 1.5036 2.6170 0.8113 6 1 3.5944 1.4101 0.5825 7 6 2.0093 -1.2102 0.0005 8 1 1.5383 -2.1056 0.3785 9 6 3.3281 -1.2623 -0.4921 10 6 3.8699 -0.5336 -1.6547 11 6 3.3446 0.3610 -2.5780 12 7 4.1087 0.8534 -3.5331 13 6 5.3839 0.5248 -3.6523 14 6 5.9831 -0.3591 -2.7807 15 6 5.2235 -0.9072 -1.7489 16 7 5.4924 -1.7914 -0.7307 17 1 6.3562 -2.2028 -0.5706 18 6 4.3818 -2.0100 0.0192 19 6 4.3040 -2.9208 1.2172 20 6 5.6154 -3.5027 1.7487 21 6 4.6272 -4.4008 1.0018 22 1 -0.4850 0.8399 -0.0004 23 1 2.3073 0.6543 -2.5137 24 1 5.9677 0.9554 -4.4524 25 1 7.0247 -0.6210 -2.8944 26 1 3.5304 -2.6754 1.9449 27 1 6.5346 -3.2264 1.2320 28 1 5.7049 -3.6400 2.8263 29 1 4.0666 -5.1288 1.5881 30 1 4.8964 -4.7155 -0.0063 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259517446.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = 85.543202 kcal Electronic energy + Delta-G solvation = -15295.131129 eV Core-core repulsion = 12863.321268 eV Total energy + Delta-G solvation = -2431.809861 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.47327 -37.60780 -35.71006 -33.63258 -31.27802 -29.70799 -28.67735 -25.17547 -23.43300 -22.17334 -21.82723 -20.37343 -19.02132 -17.74144 -16.48956 -15.62588 -15.03015 -14.76522 -14.54330 -13.88220 -13.57633 -13.40246 -12.96330 -12.66892 -11.98099 -11.47895 -11.34895 -11.21417 -11.15306 -10.68866 -10.27407 -10.13961 -9.93456 -9.77243 -9.17872 -8.69696 -8.49871 -7.75171 -6.82542 -6.75053 -4.18811 1.76269 2.43059 3.06309 3.27732 3.36695 3.59616 3.96272 4.12122 4.44461 4.71014 5.08536 5.18581 5.31977 5.35642 5.47681 5.58785 5.82012 5.89806 6.00014 6.11613 6.19237 6.34610 6.40810 6.48426 6.63008 6.69326 7.05253 7.15090 7.47203 7.69353 8.04869 8.42963 8.49040 8.75280 8.92049 9.00110 10.28128 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.014781 C = 0.009250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.588133 B = 1893.862737 C = 3026.441918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.096 3.904 3 Si 0.873 3.127 4 H -0.250 1.250 5 H -0.286 1.286 6 H -0.256 1.256 7 C -0.448 4.448 8 H 0.091 0.909 9 C 0.066 3.934 10 C -0.187 4.187 11 C 0.162 3.838 12 N -0.534 5.534 13 C 0.087 3.913 14 C -0.210 4.210 15 C 0.127 3.873 16 N -0.569 5.569 17 H 0.396 0.604 18 C -0.079 4.079 19 C -0.029 4.029 20 C -0.197 4.197 21 C -0.188 4.188 22 H 0.281 0.719 23 H 0.150 0.850 24 H 0.142 0.858 25 H 0.114 0.886 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.951 -2.434 0.303 9.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.121 4.121 3 Si 0.698 3.302 4 H -0.175 1.175 5 H -0.213 1.213 6 H -0.180 1.180 7 C -0.479 4.479 8 H 0.109 0.891 9 C 0.059 3.941 10 C -0.196 4.196 11 C 0.001 3.999 12 N -0.246 5.246 13 C -0.063 4.063 14 C -0.234 4.234 15 C 0.009 3.991 16 N -0.171 5.171 17 H 0.231 0.769 18 C -0.183 4.183 19 C -0.048 4.048 20 C -0.234 4.234 21 C -0.226 4.226 22 H 0.091 0.909 23 H 0.167 0.833 24 H 0.159 0.841 25 H 0.132 0.868 26 H 0.138 0.862 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.109 0.891 30 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.435 -1.839 -0.210 8.635 hybrid contribution 1.245 -0.102 0.698 1.431 sum 9.680 -1.942 0.488 9.885 Atomic orbital electron populations 1.69833 1.07756 1.29585 1.37308 1.25779 0.94248 1.00574 0.91494 0.87000 0.81458 0.81663 0.80120 1.17516 1.21267 1.17959 1.18378 0.94417 0.96613 1.38537 0.89092 1.17830 0.92369 0.93372 0.90560 1.20459 0.94326 1.04458 1.00332 1.22263 0.99175 0.90234 0.88275 1.67682 1.06075 1.27399 1.23482 1.22036 0.91440 0.95335 0.97518 1.20751 0.99787 1.04852 0.98059 1.18112 0.95251 0.94285 0.91495 1.40818 1.11186 1.39372 1.25706 0.76899 1.19437 0.85624 1.13848 0.99378 1.20099 0.97669 0.91098 0.95975 1.22895 0.94252 1.06485 0.99749 1.23022 1.03751 0.94811 1.00972 0.90916 0.83307 0.84090 0.86789 0.86164 0.90164 0.89034 0.89112 0.89570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.91 13.94 55.54 0.77 -21.13 16 2 C 0.10 2.51 5.25 -17.32 -0.09 2.41 16 3 Si 0.87 20.73 24.37 -169.99 -4.14 16.58 16 4 H -0.25 -5.83 5.37 56.52 0.30 -5.52 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.45 -11.90 9.49 -38.02 -0.36 -12.26 16 8 H 0.09 2.53 8.06 -52.49 -0.42 2.10 16 9 C 0.07 1.64 4.99 -104.85 -0.52 1.12 16 10 C -0.19 -4.49 5.04 -104.94 -0.53 -5.02 16 11 C 0.16 3.83 8.44 -17.31 -0.15 3.68 16 12 N -0.53 -11.77 10.35 -13.11 -0.14 -11.91 16 13 C 0.09 1.64 11.14 -17.53 -0.20 1.45 16 14 C -0.21 -3.87 10.14 -39.31 -0.40 -4.27 16 15 C 0.13 2.70 7.30 -83.96 -0.61 2.08 16 16 N -0.57 -11.04 5.86 -6.10 -0.04 -11.08 16 17 H 0.40 6.26 7.79 -40.82 -0.32 5.94 16 18 C -0.08 -1.72 6.76 -80.58 -0.54 -2.26 16 19 C -0.03 -0.54 5.97 -91.77 -0.55 -1.09 16 20 C -0.20 -2.85 10.12 -26.73 -0.27 -3.12 16 21 C -0.19 -2.90 10.23 -26.73 -0.27 -3.17 16 22 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 23 H 0.15 3.58 5.91 -52.49 -0.31 3.27 16 24 H 0.14 2.11 8.06 -52.49 -0.42 1.68 16 25 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 26 H 0.12 2.28 8.11 -51.93 -0.42 1.86 16 27 H 0.08 1.09 7.04 -51.93 -0.37 0.72 16 28 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 254.75 15.07 3.84 3.84 Total: -1.00 -28.55 254.75 -7.38 -35.93 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -3.18 Total: 8.20 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: -4.49 Total: -20.43 kcal Atomic # 7 Polarization: -44.72 SS G_CDS: 0.60 Total: -44.12 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.14 Total: 16.58 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -28.55 -7.38 -35.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259517446.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.469 kcal (2) G-P(sol) polarization free energy of solvation -28.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds