Wall clock time and date at job start Mon Mar 30 2020 02:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31048 * 1 3 3 Si 1.86801 * 119.99489 * 2 1 4 4 H 1.48497 * 109.46957 * 275.41326 * 3 2 1 5 5 H 1.48505 * 109.47379 * 35.41432 * 3 2 1 6 6 H 1.48500 * 109.47125 * 155.41440 * 3 2 1 7 7 C 1.39748 * 120.00367 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00075 * 336.19137 * 7 2 1 9 9 C 1.40877 * 119.99930 * 156.18416 * 7 2 1 10 10 C 1.47513 * 126.95218 * 321.94703 * 9 7 2 11 11 C 1.38881 * 134.69034 * 359.97438 * 10 9 7 12 12 N 1.31847 * 120.19732 * 180.02562 * 11 10 9 13 13 C 1.32218 * 122.10325 * 359.97438 * 12 11 10 14 14 C 1.37845 * 121.43782 * 0.22204 * 13 12 11 15 15 C 1.39356 * 118.90514 * 359.57566 * 14 13 12 16 16 N 1.37512 * 133.98665 * 180.09590 * 15 14 13 17 17 H 0.97000 * 124.68384 * 0.25438 * 16 15 14 18 18 C 1.35781 * 110.64076 * 180.29515 * 16 15 14 19 19 C 1.50697 * 125.35227 * 179.97438 * 18 16 15 20 20 C 1.52999 * 117.50256 * 8.64887 * 19 18 16 21 21 C 1.53002 * 117.50274 * 300.02302 * 19 18 16 22 22 H 0.96994 * 120.00491 * 0.02562 * 1 2 3 23 23 H 1.07994 * 119.90633 * 0.02618 * 11 10 9 24 24 H 1.07996 * 119.28155 * 179.97438 * 13 12 11 25 25 H 1.08001 * 120.54300 * 179.70502 * 14 13 12 26 26 H 1.09004 * 115.54540 * 154.35944 * 19 18 16 27 27 H 1.09000 * 117.49674 * 0.02562 * 20 19 18 28 28 H 1.09000 * 117.49616 * 145.01695 * 20 19 18 29 29 H 1.08998 * 117.50059 * 214.97812 * 21 19 18 30 30 H 1.08995 * 117.49671 * 0.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3105 0.0000 0.0000 3 14 2.2443 1.6178 0.0000 4 1 2.3774 2.1125 -1.3938 5 1 1.5036 2.6170 0.8113 6 1 3.5944 1.4101 0.5825 7 6 2.0093 -1.2102 0.0005 8 1 1.5383 -2.1056 0.3785 9 6 3.3281 -1.2623 -0.4921 10 6 3.8699 -0.5336 -1.6547 11 6 3.3446 0.3610 -2.5780 12 7 4.1087 0.8534 -3.5331 13 6 5.3839 0.5248 -3.6523 14 6 5.9831 -0.3591 -2.7807 15 6 5.2235 -0.9072 -1.7489 16 7 5.4924 -1.7914 -0.7307 17 1 6.3562 -2.2028 -0.5706 18 6 4.3818 -2.0100 0.0192 19 6 4.3040 -2.9208 1.2172 20 6 5.6154 -3.5027 1.7487 21 6 4.6272 -4.4008 1.0018 22 1 -0.4850 0.8399 -0.0004 23 1 2.3073 0.6543 -2.5137 24 1 5.9677 0.9554 -4.4524 25 1 7.0247 -0.6210 -2.8944 26 1 3.5304 -2.6754 1.9449 27 1 6.5346 -3.2264 1.2320 28 1 5.7049 -3.6400 2.8263 29 1 4.0666 -5.1288 1.5881 30 1 4.8964 -4.7155 -0.0063 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259517446.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:47 Heat of formation + Delta-G solvation = 67.099951 kcal Electronic energy + Delta-G solvation = -15295.930888 eV Core-core repulsion = 12863.321268 eV Total energy + Delta-G solvation = -2432.609620 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.14627 -39.17563 -37.14175 -35.50352 -33.01091 -31.37060 -30.36769 -27.00584 -25.02410 -23.66868 -23.13942 -21.99991 -20.76293 -19.40676 -18.29667 -17.18562 -16.61123 -16.47293 -16.10063 -15.51682 -15.11807 -15.05524 -14.82498 -14.19079 -13.64507 -13.29546 -13.11173 -12.76082 -12.44389 -12.37435 -12.14272 -11.67261 -11.52477 -11.26058 -10.99890 -10.36025 -10.22057 -9.40852 -8.71345 -8.54377 -6.12638 0.11653 0.77261 1.18955 1.33231 1.43865 1.82727 2.20120 2.37480 2.89616 3.13092 3.31476 3.71316 3.80791 3.99745 4.03118 4.27644 4.37757 4.40955 4.59680 4.68622 4.77587 4.89162 4.99311 5.03982 5.23605 5.26095 5.33968 5.42343 5.73075 5.97745 6.23864 6.45709 6.83959 6.92677 7.10225 7.29552 8.40545 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.019010 B = 0.014781 C = 0.009250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.588133 B = 1893.862737 C = 3026.441918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.064 3.936 3 Si 0.924 3.076 4 H -0.248 1.248 5 H -0.278 1.278 6 H -0.273 1.273 7 C -0.469 4.469 8 H 0.057 0.943 9 C 0.008 3.992 10 C -0.211 4.211 11 C 0.135 3.865 12 N -0.542 5.542 13 C 0.078 3.922 14 C -0.185 4.185 15 C 0.114 3.886 16 N -0.556 5.556 17 H 0.419 0.581 18 C -0.034 4.034 19 C -0.081 4.081 20 C -0.161 4.161 21 C -0.172 4.172 22 H 0.284 0.716 23 H 0.129 0.871 24 H 0.188 0.812 25 H 0.164 0.836 26 H 0.104 0.896 27 H 0.098 0.902 28 H 0.116 0.884 29 H 0.108 0.892 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.145 -3.174 -0.099 13.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.147 4.147 3 Si 0.749 3.251 4 H -0.172 1.172 5 H -0.204 1.204 6 H -0.198 1.198 7 C -0.502 4.502 8 H 0.075 0.925 9 C 0.000 4.000 10 C -0.220 4.220 11 C -0.026 4.026 12 N -0.254 5.254 13 C -0.072 4.072 14 C -0.209 4.209 15 C -0.004 4.004 16 N -0.160 5.160 17 H 0.258 0.742 18 C -0.140 4.140 19 C -0.100 4.100 20 C -0.198 4.198 21 C -0.209 4.209 22 H 0.094 0.906 23 H 0.147 0.853 24 H 0.205 0.795 25 H 0.182 0.818 26 H 0.122 0.878 27 H 0.116 0.884 28 H 0.134 0.866 29 H 0.126 0.874 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.672 -2.581 -0.629 12.947 hybrid contribution 0.233 -0.050 0.775 0.811 sum 12.905 -2.631 0.146 13.171 Atomic orbital electron populations 1.69869 1.08601 1.30170 1.40962 1.26197 0.94625 1.02350 0.91563 0.86225 0.79436 0.79537 0.79943 1.17240 1.20428 1.19810 1.18261 0.95946 0.95695 1.40307 0.92478 1.17976 0.92791 0.96835 0.92354 1.20585 0.96111 1.04989 1.00307 1.22044 0.98948 0.91920 0.89716 1.67666 1.07741 1.27303 1.22726 1.22832 0.90458 0.95244 0.98677 1.21254 1.01648 1.02422 0.95574 1.18459 0.94542 0.94767 0.92680 1.40741 1.11566 1.38927 1.24792 0.74212 1.19946 0.85340 1.10263 0.98471 1.20159 1.01028 0.93210 0.95621 1.23047 0.92647 1.02700 1.01392 1.23069 1.03543 0.92614 1.01700 0.90561 0.85341 0.79496 0.81819 0.87791 0.88363 0.86604 0.87376 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -49.64 13.94 21.80 0.30 -49.34 16 2 C 0.06 3.57 5.25 85.17 0.45 4.02 16 3 Si 0.92 45.16 24.37 68.60 1.67 46.83 16 4 H -0.25 -11.83 5.37 99.48 0.53 -11.30 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 6 H -0.27 -13.87 7.11 99.48 0.71 -13.16 16 7 C -0.47 -26.64 9.49 23.28 0.22 -26.42 16 8 H 0.06 3.47 8.06 -2.91 -0.02 3.44 16 9 C 0.01 0.40 4.99 -20.01 -0.10 0.30 16 10 C -0.21 -10.17 5.04 -20.07 -0.10 -10.27 16 11 C 0.14 6.50 8.44 84.84 0.72 7.22 16 12 N -0.54 -23.15 10.35 -195.38 -2.02 -25.18 16 13 C 0.08 2.63 11.14 84.54 0.94 3.57 16 14 C -0.19 -5.95 10.14 22.45 0.23 -5.72 16 15 C 0.11 4.52 7.30 39.13 0.29 4.80 16 16 N -0.56 -19.83 5.86 -173.20 -1.01 -20.85 16 17 H 0.42 11.16 7.79 -92.71 -0.72 10.43 16 18 C -0.03 -1.46 6.76 42.12 0.28 -1.17 16 19 C -0.08 -2.85 5.97 -11.54 -0.07 -2.92 16 20 C -0.16 -3.95 10.12 30.60 0.31 -3.64 16 21 C -0.17 -4.74 10.23 30.60 0.31 -4.43 16 22 H 0.28 14.94 8.30 -92.71 -0.77 14.17 16 23 H 0.13 6.53 5.91 -2.91 -0.02 6.52 16 24 H 0.19 4.51 8.06 -2.91 -0.02 4.49 16 25 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 26 H 0.10 4.02 8.11 -2.39 -0.02 4.00 16 27 H 0.10 2.09 7.04 -2.39 -0.02 2.08 16 28 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 29 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 Total: -1.00 -66.43 254.75 2.69 -63.74 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.27 Total: 19.45 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 3.48 Total: -34.65 kcal Atomic # 7 Polarization: -92.63 SS G_CDS: -2.73 Total: -95.36 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.67 Total: 46.83 kcal Total: -66.43 2.69 -63.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259517446.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.837 kcal (2) G-P(sol) polarization free energy of solvation -66.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds