Wall clock time and date at job start Mon Mar 30 2020 02:54:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30724 * 1 3 3 Si 1.86798 * 119.99639 * 2 1 4 4 H 1.48498 * 109.47175 * 269.99969 * 3 2 1 5 5 H 1.48506 * 109.47225 * 30.00417 * 3 2 1 6 6 H 1.48504 * 109.46680 * 149.99860 * 3 2 1 7 7 C 1.40139 * 119.99912 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99503 * 179.97438 * 7 2 1 9 9 C 1.40503 * 120.00190 * 0.28058 * 7 2 1 10 10 N 1.33959 * 120.48955 * 359.44300 * 9 7 2 11 11 C 1.31431 * 121.97560 * 179.70028 * 10 9 7 12 12 C 1.38603 * 122.41318 * 0.67021 * 11 10 9 13 13 C 1.39001 * 119.78325 * 359.63833 * 12 11 10 14 14 C 1.40925 * 118.44123 * 359.97438 * 13 12 11 15 15 C 1.40615 * 106.72978 * 180.11447 * 14 13 12 16 16 C 1.35531 * 107.88293 * 0.03289 * 15 14 13 17 17 N 1.36549 * 109.57141 * 359.84433 * 16 15 14 18 18 C 1.47332 * 110.66488 * 180.30076 * 17 16 15 19 19 C 1.54275 * 105.66374 * 342.53093 * 18 17 16 20 20 C 1.51638 * 140.65155 * 179.69251 * 16 15 14 21 21 H 0.96991 * 119.99854 * 359.97438 * 1 2 3 22 22 H 1.08001 * 118.79436 * 180.36023 * 11 10 9 23 23 H 1.08000 * 120.10963 * 179.61549 * 12 11 10 24 24 H 1.08006 * 126.05920 * 180.02562 * 15 14 13 25 25 H 1.09000 * 110.21014 * 101.58090 * 18 17 16 26 26 H 1.08991 * 110.21332 * 223.48361 * 18 17 16 27 27 H 1.08996 * 110.93265 * 268.12170 * 19 18 17 28 28 H 1.09000 * 110.92704 * 144.46365 * 19 18 17 29 29 H 1.09005 * 110.46846 * 315.55563 * 20 16 15 30 30 H 1.08997 * 110.46677 * 78.14223 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3072 0.0000 0.0000 3 14 2.2411 1.6178 0.0000 4 1 2.4886 2.0465 -1.4001 5 1 1.4385 2.6527 0.7001 6 1 3.5387 1.4402 0.7001 7 6 2.0079 -1.2137 0.0005 8 1 3.0879 -1.2136 0.0001 9 6 1.3054 -2.4305 -0.0049 10 7 -0.0341 -2.4420 0.0006 11 6 -0.7205 -3.5627 -0.0100 12 6 -0.1108 -4.8074 -0.0139 13 6 1.2764 -4.8967 -0.0141 14 6 2.0257 -3.7032 -0.0108 15 6 3.3814 -4.0765 -0.0144 16 6 3.4403 -5.4305 -0.0204 17 7 2.1748 -5.9434 -0.0173 18 6 2.2106 -7.4163 -0.0165 19 6 3.6363 -7.7984 -0.4654 20 6 4.4517 -6.5603 -0.0320 21 1 -0.4849 0.8400 0.0004 22 1 -1.7994 -3.5120 -0.0108 23 1 -0.7114 -5.7050 -0.0165 24 1 4.2262 -3.4035 -0.0129 25 1 2.0168 -7.7971 0.9862 26 1 1.4764 -7.8112 -0.7184 27 1 3.6809 -7.9352 -1.5458 28 1 3.9812 -8.6928 0.0535 29 1 5.2442 -6.3550 -0.7517 30 1 4.8691 -6.7084 0.9639 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259615489.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:30 Heat of formation + Delta-G solvation = 72.146051 kcal Electronic energy + Delta-G solvation = -15068.439711 eV Core-core repulsion = 12636.048906 eV Total energy + Delta-G solvation = -2432.390805 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.61639 -37.10902 -34.13833 -33.39272 -30.88390 -29.13289 -28.05334 -26.04285 -24.84525 -22.29615 -20.54139 -20.10029 -18.95610 -17.14422 -16.16009 -15.73970 -14.95151 -14.43736 -13.78630 -13.28026 -13.19988 -12.78585 -12.70197 -12.40642 -11.73015 -11.57366 -11.45546 -11.23406 -11.17087 -11.05701 -10.73943 -10.45321 -10.30814 -9.69828 -9.35951 -8.29883 -7.52284 -7.24122 -6.64168 -6.45942 -4.43224 2.46821 3.03965 3.06905 3.10825 3.42367 3.65717 3.86432 3.90389 4.62448 4.74247 4.97788 5.00432 5.44177 5.63345 5.76254 5.81750 6.00101 6.01774 6.10571 6.19793 6.33642 6.55765 6.78401 6.85546 7.01544 7.14599 7.25073 7.62134 7.81225 8.04041 8.14278 8.21559 8.53905 8.66621 8.98242 10.14586 10.35064 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.039628 B = 0.007903 C = 0.006640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.405118 B = 3542.330913 C = 4215.541018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.697 5.697 2 C 0.063 3.937 3 Si 0.912 3.088 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.396 4.396 8 H 0.088 0.912 9 C 0.298 3.702 10 N -0.526 5.526 11 C 0.157 3.843 12 C -0.356 4.356 13 C 0.173 3.827 14 C -0.229 4.229 15 C -0.127 4.127 16 C -0.049 4.049 17 N -0.500 5.500 18 C 0.118 3.882 19 C -0.130 4.130 20 C -0.048 4.048 21 H 0.276 0.724 22 H 0.117 0.883 23 H 0.084 0.916 24 H 0.123 0.877 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.578 -7.815 -0.256 9.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.316 5.316 2 C -0.164 4.164 3 Si 0.735 3.265 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.426 4.426 8 H 0.106 0.894 9 C 0.170 3.830 10 N -0.241 5.241 11 C -0.005 4.005 12 C -0.385 4.385 13 C 0.063 3.937 14 C -0.236 4.236 15 C -0.153 4.153 16 C -0.154 4.154 17 N -0.186 5.186 18 C -0.004 4.004 19 C -0.168 4.168 20 C -0.086 4.086 21 H 0.087 0.913 22 H 0.135 0.865 23 H 0.102 0.898 24 H 0.141 0.859 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.095 0.905 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.745 -7.215 -0.241 8.639 hybrid contribution 0.595 -0.359 0.001 0.695 sum 5.341 -7.574 -0.240 9.270 Atomic orbital electron populations 1.70151 1.07377 1.28184 1.25924 1.26210 0.94984 1.01382 0.93856 0.86254 0.80529 0.80305 0.79410 1.19203 1.19947 1.18274 1.19566 0.94736 0.89251 1.39087 0.89357 1.19245 0.87731 0.89132 0.86872 1.68809 1.06255 1.25643 1.23389 1.22088 0.98331 0.87817 0.92216 1.19995 0.90353 0.97894 1.30241 1.17868 0.90984 0.84178 1.00670 1.19907 0.92425 0.93416 1.17874 1.19598 0.95800 0.91008 1.08889 1.21260 0.85432 0.93458 1.15250 1.44837 1.06359 1.03858 1.63577 1.21998 0.98095 0.79070 1.01232 1.22573 0.93984 0.98280 1.01924 1.20557 0.95923 0.90647 1.01500 0.91279 0.86540 0.89766 0.85904 0.91436 0.91055 0.90488 0.89706 0.90532 0.90860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.49 11.49 55.56 0.64 -17.85 16 2 C 0.06 1.60 5.50 -17.31 -0.10 1.51 16 3 Si 0.91 18.31 29.56 -169.99 -5.02 13.28 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 7 C -0.40 -10.72 9.13 -38.02 -0.35 -11.07 16 8 H 0.09 2.23 7.80 -52.49 -0.41 1.82 16 9 C 0.30 8.52 6.72 -82.87 -0.56 7.96 16 10 N -0.53 -15.13 7.90 -9.82 -0.08 -15.20 16 11 C 0.16 4.08 11.10 -17.59 -0.20 3.89 16 12 C -0.36 -8.89 10.11 -39.16 -0.40 -9.29 16 13 C 0.17 4.39 7.32 -83.82 -0.61 3.77 16 14 C -0.23 -6.12 6.23 -104.77 -0.65 -6.78 16 15 C -0.13 -2.95 10.73 -39.65 -0.43 -3.37 16 16 C -0.05 -0.99 7.39 -81.00 -0.60 -1.59 16 17 N -0.50 -10.68 3.63 -107.77 -0.39 -11.07 16 18 C 0.12 1.82 7.77 -2.92 -0.02 1.80 16 19 C -0.13 -1.57 7.14 -25.30 -0.18 -1.75 16 20 C -0.05 -0.69 6.85 -26.66 -0.18 -0.88 16 21 H 0.28 6.55 8.29 -40.82 -0.34 6.21 16 22 H 0.12 2.66 8.06 -52.49 -0.42 2.24 16 23 H 0.08 1.90 8.06 -52.49 -0.42 1.48 16 24 H 0.12 2.61 8.06 -52.48 -0.42 2.18 16 25 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 259.00 15.07 3.90 3.90 Total: -1.00 -31.76 259.00 -8.57 -40.33 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -3.35 Total: 2.41 kcal Atomic # 6 Polarization: -11.53 SS G_CDS: -4.27 Total: -15.80 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.17 Total: -44.12 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.28 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.76 -8.57 -40.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259615489.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.474 kcal (2) G-P(sol) polarization free energy of solvation -31.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds