Wall clock time and date at job start Mon Mar 30 2020 03:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37923 * 125.80662 * 2 1 4 4 C 1.39602 * 126.10293 * 0.04316 * 3 2 1 5 5 H 1.08001 * 119.99863 * 8.71908 * 4 3 2 6 6 C 1.40190 * 120.00018 * 188.72129 * 4 3 2 7 7 N 1.30769 * 119.99982 * 353.27971 * 6 4 3 8 8 Si 1.86805 * 120.00083 * 173.28079 * 6 4 3 9 9 H 1.48496 * 109.47179 * 94.98476 * 8 6 4 10 10 H 1.48501 * 109.46811 * 214.98782 * 8 6 4 11 11 H 1.48497 * 109.46706 * 334.98463 * 8 6 4 12 12 C 1.40096 * 107.79279 * 180.02562 * 3 2 1 13 13 C 1.38447 * 107.49913 * 359.97438 * 12 3 2 14 14 C 1.37249 * 125.80929 * 180.02562 * 2 1 3 15 15 C 1.47295 * 125.77663 * 359.71207 * 14 2 1 16 16 C 1.39877 * 119.76928 * 171.47326 * 15 14 2 17 17 C 1.38270 * 119.02771 * 179.79427 * 16 15 14 18 18 C 1.38886 * 118.55009 * 0.47593 * 17 16 15 19 19 C 1.38403 * 119.44987 * 359.75030 * 18 17 16 20 20 N 1.31641 * 120.94389 * 0.02562 * 19 18 17 21 21 H 1.09002 * 109.47198 * 269.85701 * 1 2 3 22 22 H 1.09003 * 109.47680 * 29.85602 * 1 2 3 23 23 H 1.09002 * 109.47539 * 149.85929 * 1 2 3 24 24 H 0.97004 * 119.99714 * 180.02562 * 7 6 4 25 25 H 1.08004 * 126.25009 * 179.97438 * 12 3 2 26 26 H 1.07997 * 126.05859 * 179.97438 * 13 12 3 27 27 H 1.07993 * 120.48428 * 0.02562 * 16 15 14 28 28 H 1.08006 * 120.72149 * 180.22295 * 17 16 15 29 29 H 1.08001 * 120.27277 * 179.71955 * 18 17 16 30 30 H 1.08007 * 119.52367 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2719 1.1186 0.0000 4 6 1.8384 2.4456 0.0008 5 1 0.7920 2.6717 0.1434 6 6 2.7613 3.4846 -0.1833 7 7 4.0418 3.2221 -0.2244 8 14 2.1621 5.2440 -0.3701 9 1 2.1983 5.9221 0.9505 10 1 3.0418 5.9680 -1.3227 11 1 0.7699 5.2405 -0.8868 12 6 3.6042 0.6853 -0.0006 13 6 3.5917 -0.6991 -0.0004 14 6 2.2680 -1.1130 -0.0005 15 6 1.8027 -2.5106 0.0049 16 6 2.7219 -3.5493 -0.1763 17 6 2.2690 -4.8556 -0.1643 18 6 0.9116 -5.0859 0.0181 19 6 0.0557 -4.0114 0.1869 20 7 0.5101 -2.7760 0.1763 21 1 -0.3634 -0.0026 1.0277 22 1 -0.3634 0.8913 -0.5116 23 1 -0.3634 -0.8887 -0.5160 24 1 4.6804 3.9411 -0.3515 25 1 4.4809 1.3161 -0.0011 26 1 4.4591 -1.3426 -0.0011 27 1 3.7704 -3.3342 -0.3197 28 1 2.9554 -5.6788 -0.2979 29 1 0.5270 -6.0951 0.0277 30 1 -1.0002 -4.1891 0.3284 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259620347.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:59 Heat of formation + Delta-G solvation = 71.688345 kcal Electronic energy + Delta-G solvation = -14862.990900 eV Core-core repulsion = 12430.580247 eV Total energy + Delta-G solvation = -2432.410653 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68445 -38.53758 -33.75947 -32.01188 -31.44885 -30.72999 -28.15671 -25.13013 -24.83384 -22.81263 -22.01623 -19.21907 -18.63349 -16.90506 -16.16602 -15.57528 -15.12727 -15.01740 -13.99990 -13.94046 -13.06667 -12.96044 -12.49628 -12.29713 -12.10505 -11.67692 -11.45666 -11.24686 -11.00581 -10.95113 -10.53962 -10.28269 -9.81746 -9.47744 -9.31750 -8.72822 -8.62030 -7.18427 -6.72154 -6.64622 -4.22777 1.54691 1.87686 2.92293 3.03795 3.08005 3.58053 3.85058 4.28350 4.49414 4.84174 4.97227 5.28059 5.30941 5.47953 5.64378 5.79520 6.06852 6.21719 6.35217 6.37132 6.57199 6.59433 6.70149 6.78782 7.01804 7.12002 7.40506 7.63071 7.78628 8.07308 8.19762 8.64963 8.70959 8.84488 9.08817 9.23438 10.17140 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.057687 B = 0.006530 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 485.261500 B = 4287.042011 C = 4746.576938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.470 5.470 3 C 0.242 3.758 4 C -0.442 4.442 5 H 0.076 0.924 6 C 0.076 3.924 7 N -0.787 5.787 8 Si 0.924 3.076 9 H -0.269 1.269 10 H -0.275 1.275 11 H -0.263 1.263 12 C -0.273 4.273 13 C -0.121 4.121 14 C -0.095 4.095 15 C 0.244 3.756 16 C -0.199 4.199 17 C -0.064 4.064 18 C -0.242 4.242 19 C 0.114 3.886 20 N -0.520 5.520 21 H 0.044 0.956 22 H 0.059 0.941 23 H 0.080 0.920 24 H 0.280 0.720 25 H 0.161 0.839 26 H 0.110 0.890 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -6.471 -0.394 7.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.154 5.154 3 C 0.128 3.872 4 C -0.477 4.477 5 H 0.094 0.906 6 C -0.143 4.143 7 N -0.413 5.413 8 Si 0.749 3.251 9 H -0.195 1.195 10 H -0.200 1.200 11 H -0.186 1.186 12 C -0.295 4.295 13 C -0.148 4.148 14 C -0.199 4.199 15 C 0.113 3.887 16 C -0.220 4.220 17 C -0.089 4.089 18 C -0.263 4.263 19 C -0.045 4.045 20 N -0.231 5.231 21 H 0.062 0.938 22 H 0.078 0.922 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.178 0.822 26 H 0.128 0.872 27 H 0.145 0.855 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -3.694 -5.790 -0.309 6.875 hybrid contribution 0.279 -0.116 -0.149 0.337 sum -3.416 -5.907 -0.458 6.838 Atomic orbital electron populations 1.21577 0.79408 1.02177 1.00972 1.43816 1.04365 1.04985 1.62231 1.18350 0.88757 0.85712 0.94360 1.18572 0.95599 0.88781 1.44778 0.90620 1.25776 0.94276 1.01551 0.92733 1.69707 1.02097 1.34339 1.35163 0.86033 0.79719 0.80446 0.78932 1.19461 1.19964 1.18646 1.21893 0.96972 0.92354 1.18238 1.20905 0.92673 0.96172 1.05031 1.17988 0.89751 0.83409 1.28722 1.19197 0.87821 0.91767 0.89943 1.21778 1.00784 0.92506 1.06894 1.21269 0.95462 0.96390 0.95751 1.21750 0.94625 0.99690 1.10210 1.22522 0.99382 0.88162 0.94481 1.67909 1.15840 1.22224 1.17146 0.93764 0.92180 0.90116 0.90895 0.82239 0.87215 0.85469 0.86080 0.86399 0.84129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.17 10.14 59.84 0.61 2.78 16 2 N -0.47 -11.83 3.22 -117.06 -0.38 -12.21 16 3 C 0.24 6.53 6.66 -83.92 -0.56 5.97 16 4 C -0.44 -11.52 8.90 -38.34 -0.34 -11.86 16 5 H 0.08 1.87 7.26 -52.49 -0.38 1.49 16 6 C 0.08 1.85 5.49 -17.27 -0.09 1.76 16 7 N -0.79 -19.74 10.28 55.56 0.57 -19.17 16 8 Si 0.92 18.21 29.57 -169.99 -5.03 13.19 16 9 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 10 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 11 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 12 C -0.27 -7.30 9.74 -38.81 -0.38 -7.68 16 13 C -0.12 -2.95 10.18 -39.34 -0.40 -3.35 16 14 C -0.09 -2.33 6.86 -81.59 -0.56 -2.89 16 15 C 0.24 5.30 6.72 -83.04 -0.56 4.75 16 16 C -0.20 -3.69 9.60 -38.96 -0.37 -4.07 16 17 C -0.06 -0.99 10.16 -39.33 -0.40 -1.39 16 18 C -0.24 -3.63 10.11 -39.28 -0.40 -4.03 16 19 C 0.11 1.90 11.17 -17.57 -0.20 1.70 16 20 N -0.52 -10.64 7.68 -9.86 -0.08 -10.71 16 21 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.06 1.21 7.42 -51.93 -0.39 0.82 16 23 H 0.08 1.66 6.29 -51.93 -0.33 1.34 16 24 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 25 H 0.16 4.36 5.72 -52.48 -0.30 4.06 16 26 H 0.11 2.35 7.31 -52.49 -0.38 1.96 16 27 H 0.13 2.20 7.03 -52.49 -0.37 1.83 16 28 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 29 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 30 H 0.14 1.88 8.06 -52.48 -0.42 1.45 16 LS Contribution 259.44 15.07 3.91 3.91 Total: -1.00 -28.67 259.44 -7.62 -36.29 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -2.97 Total: 7.01 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: -3.65 Total: -18.31 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.12 Total: -42.09 kcal Atomic # 14 Polarization: 18.21 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -28.67 -7.62 -36.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259620347.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.978 kcal (2) G-P(sol) polarization free energy of solvation -28.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds