Wall clock time and date at job start Mon Mar 30 2020 02:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38443 * 119.81979 * 2 1 4 4 C 1.37844 * 120.18240 * 179.97438 * 3 2 1 5 5 C 1.39962 * 119.81582 * 0.02562 * 4 3 2 6 6 C 1.47190 * 120.17882 * 179.97438 * 5 4 3 7 7 N 1.36221 * 126.66207 * 314.67953 * 6 5 4 8 8 H 0.96998 * 125.79142 * 359.97438 * 7 6 5 9 9 N 1.39860 * 108.41806 * 179.85029 * 7 6 5 10 10 C 1.30215 * 109.66754 * 0.43315 * 9 7 6 11 11 C 1.40861 * 126.66693 * 134.99701 * 6 5 4 12 12 C 1.40890 * 126.62834 * 0.03362 * 11 6 5 13 13 H 1.08001 * 119.99947 * 5.78506 * 12 11 6 14 14 C 1.39866 * 120.00265 * 185.78851 * 12 11 6 15 15 N 1.30945 * 120.00101 * 10.48289 * 14 12 11 16 16 Si 1.86801 * 120.00221 * 190.48746 * 14 12 11 17 17 H 1.48505 * 109.47107 * 94.45689 * 16 14 12 18 18 H 1.48497 * 109.46926 * 214.45608 * 16 14 12 19 19 H 1.48493 * 109.47008 * 334.45877 * 16 14 12 20 20 C 1.39964 * 119.64082 * 359.97438 * 5 4 3 21 21 C 1.37836 * 119.81820 * 0.02562 * 20 5 4 22 22 H 1.08998 * 109.46918 * 90.00034 * 1 2 3 23 23 H 1.08999 * 109.46917 * 210.00187 * 1 2 3 24 24 H 1.09007 * 109.46824 * 329.99798 * 1 2 3 25 25 H 1.08003 * 119.91229 * 0.02562 * 3 2 1 26 26 H 1.07997 * 120.09702 * 179.72487 * 4 3 2 27 27 H 1.07999 * 125.74782 * 179.77971 * 10 9 7 28 28 H 0.96991 * 120.00503 * 180.02562 * 15 14 12 29 29 H 1.07997 * 120.08515 * 180.02562 * 20 5 4 30 30 H 1.07999 * 119.91558 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1955 1.2011 0.0000 4 6 3.5739 1.2098 0.0005 5 6 4.2775 -0.0001 0.0005 6 6 5.7494 -0.0001 0.0005 7 7 6.5628 0.7683 -0.7765 8 1 6.2703 1.4183 -1.4343 9 7 7.8910 0.4628 -0.4627 10 6 7.9234 -0.4576 0.4579 11 6 6.5905 -0.7990 0.7995 12 6 6.1856 -1.7536 1.7533 13 1 5.1391 -1.9972 1.8628 14 6 7.1387 -2.3858 2.5584 15 7 8.3737 -1.9509 2.5752 16 14 6.6499 -3.8505 3.6097 17 1 6.9400 -5.1071 2.8733 18 1 7.4230 -3.8298 4.8773 19 1 5.1982 -3.7789 3.9139 20 6 3.5738 -1.2100 0.0005 21 6 2.1955 -1.2013 0.0000 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5139 25 1 1.6511 2.1339 0.0004 26 1 4.1095 2.1476 -0.0040 27 1 8.8154 -0.8877 0.8889 28 1 9.0348 -2.3895 3.1332 29 1 4.1095 -2.1478 0.0009 30 1 1.6510 -2.1339 0.0004 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259644452.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:17 Heat of formation + Delta-G solvation = 74.755300 kcal Electronic energy + Delta-G solvation = -14808.265282 eV Core-core repulsion = 12375.987622 eV Total energy + Delta-G solvation = -2432.277659 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.35452 -38.14043 -33.66685 -32.66167 -30.43670 -29.61296 -29.12125 -26.31726 -24.45589 -21.99575 -21.17805 -19.83277 -19.14887 -17.52553 -15.75461 -14.95678 -14.82065 -14.50844 -14.09618 -13.44512 -12.94033 -12.89420 -12.82230 -12.59724 -11.97996 -11.72763 -11.37990 -11.28038 -11.18264 -10.98127 -10.45321 -10.28488 -10.06105 -9.37877 -9.02460 -8.39663 -8.33416 -7.71440 -7.11905 -6.67838 -4.08053 1.77294 2.04860 2.97921 3.12373 3.16857 3.37986 3.99826 4.22738 4.29564 4.55477 5.29476 5.32609 5.43061 5.55121 5.70882 5.79499 5.88673 6.03649 6.11292 6.29438 6.64333 6.66193 6.70113 7.01329 7.14588 7.15480 7.19349 7.44901 7.57454 7.68532 7.98363 8.47310 8.72965 8.93534 8.96535 9.37365 10.31260 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.023550 B = 0.009225 C = 0.006892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.663966 B = 3034.547922 C = 4061.987881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.127 4.127 3 C -0.116 4.116 4 C -0.138 4.138 5 C 0.044 3.956 6 C -0.090 4.090 7 N -0.504 5.504 8 H 0.414 0.586 9 N -0.317 5.317 10 C 0.026 3.974 11 C 0.019 3.981 12 C -0.423 4.423 13 H 0.079 0.921 14 C 0.069 3.931 15 N -0.819 5.819 16 Si 0.914 3.086 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.263 1.263 20 C -0.111 4.111 21 C -0.115 4.115 22 H 0.060 0.940 23 H 0.059 0.941 24 H 0.058 0.942 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.197 0.803 28 H 0.279 0.721 29 H 0.127 0.873 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.247 0.836 -2.338 9.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.128 4.128 3 C -0.134 4.134 4 C -0.157 4.157 5 C 0.042 3.958 6 C -0.208 4.208 7 N -0.220 5.220 8 H 0.254 0.746 9 N -0.139 5.139 10 C -0.163 4.163 11 C 0.010 3.990 12 C -0.456 4.456 13 H 0.098 0.902 14 C -0.145 4.145 15 N -0.448 5.448 16 Si 0.739 3.261 17 H -0.196 1.196 18 H -0.204 1.204 19 H -0.187 1.187 20 C -0.130 4.130 21 C -0.133 4.133 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.077 0.923 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.213 0.787 28 H 0.090 0.910 29 H 0.145 0.855 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.314 1.474 -2.896 8.926 hybrid contribution -0.730 -0.770 0.812 1.336 sum -9.044 0.704 -2.084 9.307 Atomic orbital electron populations 1.20668 0.92203 1.01905 1.01322 1.19732 0.95222 0.93342 1.04470 1.20713 0.93939 0.96784 1.01954 1.21189 0.93745 0.97295 1.03519 1.17951 0.89878 0.92357 0.95635 1.19198 0.88783 1.05429 1.07404 1.45470 1.03141 1.37304 1.36063 0.74624 1.76326 0.97899 1.19826 1.19842 1.24719 0.99946 0.96101 0.95550 1.18149 0.90030 0.95063 0.95784 1.18917 0.94671 1.17589 1.14415 0.90249 1.25824 0.94510 0.97853 0.96360 1.69565 1.03316 1.37275 1.34662 0.86187 0.79720 0.81146 0.79020 1.19599 1.20394 1.18679 1.21326 0.93238 0.98209 1.00220 1.20835 0.94152 0.96834 1.01480 0.92162 0.92200 0.92332 0.87221 0.87174 0.78713 0.91040 0.85509 0.86929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.00 36.01 0.36 -0.88 16 2 C -0.13 -2.00 5.89 -104.46 -0.62 -2.62 16 3 C -0.12 -1.88 9.68 -39.65 -0.38 -2.27 16 4 C -0.14 -2.58 9.80 -39.08 -0.38 -2.97 16 5 C 0.04 0.94 5.72 -104.97 -0.60 0.34 16 6 C -0.09 -2.17 6.78 -81.29 -0.55 -2.72 16 7 N -0.50 -11.53 7.37 33.89 0.25 -11.28 16 8 H 0.41 7.98 8.96 -182.78 -1.64 6.34 16 9 N -0.32 -7.95 12.57 30.93 0.39 -7.56 16 10 C 0.03 0.69 10.86 -16.89 -0.18 0.51 16 11 C 0.02 0.52 5.90 -106.55 -0.63 -0.11 16 12 C -0.42 -11.09 8.70 -37.97 -0.33 -11.42 16 13 H 0.08 2.02 6.27 -52.49 -0.33 1.69 16 14 C 0.07 1.71 5.45 -17.32 -0.09 1.62 16 15 N -0.82 -20.73 10.52 55.54 0.58 -20.15 16 16 Si 0.91 18.81 29.57 -169.99 -5.03 13.78 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 19 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 20 C -0.11 -2.21 8.50 -39.08 -0.33 -2.54 16 21 C -0.11 -1.95 9.68 -39.65 -0.38 -2.33 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.65 8.08 -51.93 -0.42 0.24 16 24 H 0.06 0.63 8.08 -51.92 -0.42 0.21 16 25 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 26 H 0.11 1.94 8.06 -52.49 -0.42 1.52 16 27 H 0.20 5.17 5.97 -52.49 -0.31 4.86 16 28 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 29 H 0.13 2.60 7.25 -52.49 -0.38 2.22 16 30 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 263.55 15.07 3.97 3.97 Total: -1.00 -27.99 263.55 -8.28 -36.27 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -4.33 Total: 10.36 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -4.13 Total: -25.39 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 1.22 Total: -38.99 kcal Atomic # 14 Polarization: 18.81 SS G_CDS: -5.03 Total: 13.78 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -27.99 -8.28 -36.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259644452.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.025 kcal (2) G-P(sol) polarization free energy of solvation -27.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds