Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46900 * 300.00333 * 3 2 1 6 6 H 1.48499 * 109.47076 * 60.00219 * 3 2 1 7 7 C 1.37876 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99961 * 174.02559 * 7 2 1 9 9 C 1.50699 * 120.00265 * 354.03183 * 7 2 1 10 10 C 1.50694 * 115.55504 * 86.24227 * 9 7 2 11 11 N 1.30111 * 124.95075 * 172.33255 * 10 9 7 12 12 C 1.35784 * 109.64139 * 180.02562 * 11 10 9 13 13 C 1.39741 * 133.59952 * 179.97438 * 12 11 10 14 14 C 1.36606 * 119.88820 * 180.02562 * 13 12 11 15 15 C 1.38779 * 120.66528 * 359.97438 * 14 13 12 16 16 C 1.37855 * 120.45295 * 0.24509 * 15 14 13 17 17 C 1.38830 * 119.68908 * 359.52039 * 16 15 14 18 18 N 1.36040 * 124.95082 * 352.37566 * 10 9 7 19 19 H 0.97004 * 126.34473 * 359.96589 * 18 10 9 20 20 C 1.53005 * 117.49784 * 231.91683 * 9 7 2 21 21 C 1.52999 * 117.49433 * 300.57182 * 9 7 2 22 22 H 0.96998 * 119.99679 * 354.96817 * 1 2 3 23 23 H 1.08001 * 120.05480 * 359.97438 * 13 12 11 24 24 H 1.07995 * 119.66693 * 180.02562 * 14 13 12 25 25 H 1.08003 * 119.77049 * 179.97438 * 15 14 13 26 26 H 1.08004 * 120.15347 * 179.67363 * 16 15 14 27 27 H 1.08998 * 117.49714 * 215.00242 * 20 9 7 28 28 H 1.09003 * 117.49432 * 0.02562 * 20 9 7 29 29 H 1.08998 * 117.49991 * 359.97438 * 21 9 7 30 30 H 1.09003 * 117.49989 * 144.99463 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0801 -1.1966 -0.0979 9 6 1.2572 -2.4957 0.1346 10 6 0.7357 -3.0824 -1.1518 11 7 0.1934 -4.2594 -1.2683 12 6 -0.1637 -4.4714 -2.5610 13 6 -0.7696 -5.5377 -3.2310 14 6 -1.0054 -5.4521 -4.5738 15 6 -0.6495 -4.3140 -5.2838 16 6 -0.0466 -3.2518 -4.6447 17 6 0.1964 -3.3188 -3.2794 18 7 0.7640 -2.4590 -2.3606 19 1 1.1168 -1.5740 -2.5429 20 6 1.7260 -3.4705 1.2167 21 6 0.4159 -2.6995 1.3962 22 1 -0.4849 0.8368 0.0737 23 1 -1.0502 -6.4282 -2.6882 24 1 -1.4742 -6.2781 -5.0879 25 1 -0.8423 -4.2620 -6.3452 26 1 0.2331 -2.3705 -5.2029 27 1 1.6574 -4.5361 0.9981 28 1 2.5748 -3.1700 1.8311 29 1 0.4034 -1.8923 2.1286 30 1 -0.5148 -3.2579 1.2957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259717579.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = 84.504708 kcal Electronic energy + Delta-G solvation = -15118.576903 eV Core-core repulsion = 12686.722009 eV Total energy + Delta-G solvation = -2431.854893 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.27831 -37.15596 -35.68661 -32.56563 -31.97280 -29.33603 -28.48934 -25.91929 -23.04740 -21.61019 -21.16672 -21.00058 -19.07278 -17.32218 -16.65880 -15.94373 -14.90559 -14.62769 -14.33942 -13.79360 -13.52692 -13.40079 -12.99448 -11.96377 -11.59060 -11.51839 -11.20277 -11.09317 -10.98814 -10.69208 -10.31038 -9.98200 -9.92227 -9.25039 -9.09054 -8.78068 -8.70331 -7.67685 -7.25009 -6.33199 -4.47659 1.57539 2.10525 3.10267 3.21258 3.24483 3.61714 3.85874 4.16175 4.45931 4.82153 5.07712 5.29373 5.36112 5.43997 5.71179 5.92224 6.02008 6.08514 6.30743 6.37180 6.45539 6.62535 6.72772 6.74994 6.95074 7.05503 7.13841 7.26449 7.39864 7.52338 7.58224 8.03659 8.32267 8.59831 8.89436 9.23392 10.73123 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.008682 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.795180 B = 3224.319544 C = 3831.238870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.279 1.279 7 C -0.511 4.511 8 H 0.069 0.931 9 C 0.078 3.922 10 C 0.382 3.618 11 N -0.536 5.536 12 C 0.056 3.944 13 C -0.078 4.078 14 C -0.137 4.137 15 C -0.128 4.128 16 C -0.107 4.107 17 C 0.029 3.971 18 N -0.574 5.574 19 H 0.427 0.573 20 C -0.177 4.177 21 C -0.127 4.127 22 H 0.266 0.734 23 H 0.119 0.881 24 H 0.118 0.882 25 H 0.119 0.881 26 H 0.114 0.886 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.140 -4.386 -5.965 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.133 4.133 3 Si 0.719 3.281 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.205 1.205 7 C -0.548 4.548 8 H 0.087 0.913 9 C 0.075 3.925 10 C 0.116 3.884 11 N -0.257 5.257 12 C -0.064 4.064 13 C -0.098 4.098 14 C -0.158 4.158 15 C -0.148 4.148 16 C -0.127 4.127 17 C -0.083 4.083 18 N -0.180 5.180 19 H 0.266 0.734 20 C -0.215 4.215 21 C -0.166 4.166 22 H 0.075 0.925 23 H 0.137 0.863 24 H 0.136 0.864 25 H 0.137 0.863 26 H 0.132 0.868 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.454 -4.865 -5.399 7.282 hybrid contribution 0.542 2.069 -0.781 2.277 sum 0.088 -2.796 -6.181 6.784 Atomic orbital electron populations 1.70065 1.05900 1.27480 1.46477 1.25109 0.94884 0.99322 0.93991 0.86517 0.80382 0.83186 0.78005 1.19360 1.20876 1.20478 1.20470 0.93196 0.87963 1.53219 0.91272 1.17112 0.99975 0.94239 0.81143 1.23796 0.90603 0.85987 0.87997 1.70509 1.21652 1.16757 1.16782 1.19257 1.02158 0.94343 0.90614 1.19883 0.99365 0.96871 0.93685 1.20436 1.03209 0.98369 0.93798 1.20631 1.01374 0.93655 0.99126 1.19884 1.02715 0.99654 0.90495 1.18998 1.03373 0.93441 0.92496 1.43008 1.50266 1.17581 1.07192 0.73376 1.23030 0.98654 0.96388 1.03457 1.22579 0.93025 1.00768 1.00207 0.92452 0.86256 0.86375 0.86288 0.86776 0.90050 0.89606 0.89376 0.90753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.64 12.86 55.43 0.71 -21.93 16 2 C 0.07 1.81 5.38 -17.82 -0.10 1.72 16 3 Si 0.89 19.26 29.55 -169.99 -5.02 14.24 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 7 C -0.51 -12.77 8.22 -34.44 -0.28 -13.06 16 8 H 0.07 1.72 7.82 -52.49 -0.41 1.31 16 9 C 0.08 1.89 1.90 -156.81 -0.30 1.59 16 10 C 0.38 9.24 7.38 -154.82 -1.14 8.10 16 11 N -0.54 -12.81 11.03 -8.23 -0.09 -12.90 16 12 C 0.06 1.23 7.23 -84.70 -0.61 0.62 16 13 C -0.08 -1.40 10.05 -39.61 -0.40 -1.80 16 14 C -0.14 -2.07 9.96 -39.97 -0.40 -2.47 16 15 C -0.13 -1.90 10.03 -39.52 -0.40 -2.30 16 16 C -0.11 -1.83 10.07 -39.50 -0.40 -2.22 16 17 C 0.03 0.60 7.31 -83.99 -0.61 -0.01 16 18 N -0.57 -12.87 6.04 -8.00 -0.05 -12.92 16 19 H 0.43 9.21 8.49 -40.82 -0.35 8.87 16 20 C -0.18 -3.82 9.84 -26.69 -0.26 -4.08 16 21 C -0.13 -2.95 9.36 -26.69 -0.25 -3.20 16 22 H 0.27 6.67 8.32 -40.82 -0.34 6.33 16 23 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 24 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 25 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 26 H 0.11 1.69 8.06 -52.48 -0.42 1.26 16 27 H 0.08 1.71 8.06 -51.93 -0.42 1.29 16 28 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 29 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 30 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 266.86 15.07 4.02 4.02 Total: -1.00 -27.76 266.86 -8.84 -36.61 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.27 Total: 9.99 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -5.15 Total: -17.12 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: 0.57 Total: -47.74 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -27.76 -8.84 -36.61 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717579.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.110 kcal (2) G-P(sol) polarization free energy of solvation -27.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds