Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48498 * 109.47107 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46900 * 300.00333 * 3 2 1 6 6 H 1.48499 * 109.47076 * 60.00219 * 3 2 1 7 7 C 1.37876 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99961 * 174.02559 * 7 2 1 9 9 C 1.50699 * 120.00265 * 354.03183 * 7 2 1 10 10 C 1.50694 * 115.55504 * 86.24227 * 9 7 2 11 11 N 1.30111 * 124.95075 * 172.33255 * 10 9 7 12 12 C 1.35784 * 109.64139 * 180.02562 * 11 10 9 13 13 C 1.39741 * 133.59952 * 179.97438 * 12 11 10 14 14 C 1.36606 * 119.88820 * 180.02562 * 13 12 11 15 15 C 1.38779 * 120.66528 * 359.97438 * 14 13 12 16 16 C 1.37855 * 120.45295 * 0.24509 * 15 14 13 17 17 C 1.38830 * 119.68908 * 359.52039 * 16 15 14 18 18 N 1.36040 * 124.95082 * 352.37566 * 10 9 7 19 19 H 0.97004 * 126.34473 * 359.96589 * 18 10 9 20 20 C 1.53005 * 117.49784 * 231.91683 * 9 7 2 21 21 C 1.52999 * 117.49433 * 300.57182 * 9 7 2 22 22 H 0.96998 * 119.99679 * 354.96817 * 1 2 3 23 23 H 1.08001 * 120.05480 * 359.97438 * 13 12 11 24 24 H 1.07995 * 119.66693 * 180.02562 * 14 13 12 25 25 H 1.08003 * 119.77049 * 179.97438 * 15 14 13 26 26 H 1.08004 * 120.15347 * 179.67363 * 16 15 14 27 27 H 1.08998 * 117.49714 * 215.00242 * 20 9 7 28 28 H 1.09003 * 117.49432 * 0.02562 * 20 9 7 29 29 H 1.08998 * 117.49991 * 359.97438 * 21 9 7 30 30 H 1.09003 * 117.49989 * 144.99463 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0801 -1.1966 -0.0979 9 6 1.2572 -2.4957 0.1346 10 6 0.7357 -3.0824 -1.1518 11 7 0.1934 -4.2594 -1.2683 12 6 -0.1637 -4.4714 -2.5610 13 6 -0.7696 -5.5377 -3.2310 14 6 -1.0054 -5.4521 -4.5738 15 6 -0.6495 -4.3140 -5.2838 16 6 -0.0466 -3.2518 -4.6447 17 6 0.1964 -3.3188 -3.2794 18 7 0.7640 -2.4590 -2.3606 19 1 1.1168 -1.5740 -2.5429 20 6 1.7260 -3.4705 1.2167 21 6 0.4159 -2.6995 1.3962 22 1 -0.4849 0.8368 0.0737 23 1 -1.0502 -6.4282 -2.6882 24 1 -1.4742 -6.2781 -5.0879 25 1 -0.8423 -4.2620 -6.3452 26 1 0.2331 -2.3705 -5.2029 27 1 1.6574 -4.5361 0.9981 28 1 2.5748 -3.1700 1.8311 29 1 0.4034 -1.8923 2.1286 30 1 -0.5148 -3.2579 1.2957 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259717579.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = 69.435858 kcal Electronic energy + Delta-G solvation = -15119.230337 eV Core-core repulsion = 12686.722009 eV Total energy + Delta-G solvation = -2432.508328 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.84365 -38.71013 -37.29516 -34.34523 -33.66741 -30.75251 -29.96236 -27.81492 -24.65204 -23.05964 -22.97546 -22.52521 -20.81768 -18.98785 -18.18458 -17.57003 -16.63838 -16.22934 -15.96363 -15.36539 -14.98250 -14.82367 -14.67741 -13.75399 -13.27875 -12.91939 -12.81250 -12.65311 -12.42227 -12.32995 -12.07991 -11.78211 -11.52427 -11.04500 -10.78635 -10.62569 -10.47845 -9.11941 -8.79662 -8.23330 -6.43637 0.16873 0.73235 1.38997 1.44732 1.54707 1.98398 2.27504 2.35904 2.99206 3.03764 3.53102 3.55013 3.87757 4.24698 4.32273 4.52212 4.54912 4.63274 4.65100 4.67103 4.96007 4.98188 5.09029 5.26062 5.28724 5.57603 5.62557 5.64729 5.68891 5.80931 6.06051 6.23311 6.65220 6.68277 7.21951 7.30603 8.83271 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.032749 B = 0.008682 C = 0.007307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.795180 B = 3224.319544 C = 3831.238870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.038 3.962 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.519 4.519 8 H 0.065 0.935 9 C 0.057 3.943 10 C 0.351 3.649 11 N -0.555 5.555 12 C 0.013 3.987 13 C -0.093 4.093 14 C -0.122 4.122 15 C -0.108 4.108 16 C -0.119 4.119 17 C 0.007 3.993 18 N -0.578 5.578 19 H 0.424 0.576 20 C -0.156 4.156 21 C -0.130 4.130 22 H 0.265 0.735 23 H 0.131 0.869 24 H 0.163 0.837 25 H 0.166 0.834 26 H 0.136 0.864 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.079 0.921 30 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -4.892 -8.199 9.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.165 4.165 3 Si 0.781 3.219 4 H -0.189 1.189 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.556 4.556 8 H 0.083 0.917 9 C 0.055 3.945 10 C 0.085 3.915 11 N -0.277 5.277 12 C -0.106 4.106 13 C -0.112 4.112 14 C -0.142 4.142 15 C -0.127 4.127 16 C -0.140 4.140 17 C -0.104 4.104 18 N -0.185 5.185 19 H 0.263 0.737 20 C -0.194 4.194 21 C -0.168 4.168 22 H 0.074 0.926 23 H 0.149 0.851 24 H 0.181 0.819 25 H 0.183 0.817 26 H 0.154 0.846 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.097 0.903 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.540 -5.394 -7.645 9.372 hybrid contribution 0.497 2.098 -0.247 2.170 sum -0.044 -3.296 -7.892 8.552 Atomic orbital electron populations 1.70177 1.07233 1.28043 1.47539 1.25713 0.95394 1.01980 0.93449 0.85543 0.79270 0.79392 0.77739 1.18918 1.20645 1.20560 1.20614 0.93049 0.88774 1.53206 0.91670 1.17249 1.00617 0.94869 0.81798 1.23687 0.92538 0.86799 0.88505 1.70379 1.21905 1.16857 1.18586 1.19792 1.04347 0.96302 0.90178 1.20248 0.99404 0.96423 0.95155 1.20989 1.01099 0.99551 0.92546 1.21248 0.98148 0.92114 1.01201 1.20328 1.03084 1.01551 0.89069 1.19498 1.04008 0.93005 0.93862 1.42967 1.50648 1.17604 1.07286 0.73673 1.23029 0.98023 0.96230 1.02160 1.22420 0.93394 1.00878 1.00152 0.92593 0.85110 0.81926 0.81675 0.84641 0.89621 0.88128 0.90298 0.91696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -47.80 12.86 21.45 0.28 -47.53 16 2 C 0.04 1.90 5.38 84.65 0.46 2.35 16 3 Si 0.96 39.79 29.55 68.60 2.03 41.81 16 4 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 5 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.52 -26.40 8.22 25.60 0.21 -26.19 16 8 H 0.07 3.28 7.82 -2.91 -0.02 3.26 16 9 C 0.06 2.85 1.90 -53.67 -0.10 2.75 16 10 C 0.35 17.54 7.38 137.92 1.02 18.56 16 11 N -0.56 -27.30 11.03 -179.96 -1.98 -29.28 16 12 C 0.01 0.56 7.23 39.45 0.29 0.84 16 13 C -0.09 -3.15 10.05 22.25 0.22 -2.93 16 14 C -0.12 -3.13 9.96 22.02 0.22 -2.92 16 15 C -0.11 -2.70 10.03 22.31 0.22 -2.48 16 16 C -0.12 -3.81 10.07 22.32 0.22 -3.58 16 17 C 0.01 0.29 7.31 38.86 0.28 0.57 16 18 N -0.58 -26.61 6.04 -179.23 -1.08 -27.69 16 19 H 0.42 18.94 8.49 -92.71 -0.79 18.15 16 20 C -0.16 -6.86 9.84 30.62 0.30 -6.55 16 21 C -0.13 -6.22 9.36 30.62 0.29 -5.93 16 22 H 0.26 13.54 8.32 -92.71 -0.77 12.77 16 23 H 0.13 4.00 8.06 -2.91 -0.02 3.98 16 24 H 0.16 2.78 8.06 -2.91 -0.02 2.75 16 25 H 0.17 2.69 8.06 -2.91 -0.02 2.66 16 26 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 27 H 0.09 3.65 8.06 -2.39 -0.02 3.63 16 28 H 0.10 4.04 8.14 -2.39 -0.02 4.03 16 29 H 0.08 3.86 8.14 -2.39 -0.02 3.84 16 30 H 0.06 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -61.36 266.86 3.23 -58.13 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: 0.37 Total: 30.06 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: 3.63 Total: -25.51 kcal Atomic # 7 Polarization: -101.70 SS G_CDS: -2.79 Total: -104.50 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.81 kcal Total: -61.36 3.23 -58.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259717579.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.562 kcal (2) G-P(sol) polarization free energy of solvation -61.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds