Wall clock time and date at job start Mon Mar 30 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35297 * 126.18905 * 2 1 4 4 C 1.39972 * 107.96826 * 179.73836 * 3 2 1 5 5 N 1.30864 * 108.37080 * 359.97438 * 4 3 2 6 6 N 1.35888 * 126.19433 * 179.69223 * 2 1 3 7 7 C 1.39503 * 126.10685 * 0.21419 * 6 2 1 8 8 C 1.38556 * 120.27364 * 47.54975 * 7 6 2 9 9 C 1.38272 * 120.04086 * 179.74591 * 8 7 6 10 10 C 1.38837 * 120.60194 * 0.55804 * 9 8 7 11 11 C 1.36481 * 120.56169 * 359.69911 * 10 9 8 12 12 C 1.40730 * 119.93804 * 0.02562 * 11 10 9 13 13 C 1.41095 * 120.29767 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00082 * 149.90942 * 13 12 11 15 15 C 1.39975 * 120.00118 * 329.90525 * 13 12 11 16 16 N 1.30823 * 120.00170 * 165.60582 * 15 13 12 17 17 Si 1.86803 * 119.99849 * 345.60715 * 15 13 12 18 18 H 1.48497 * 109.46931 * 93.35082 * 17 15 13 19 19 H 1.48496 * 109.47143 * 213.35171 * 17 15 13 20 20 H 1.48500 * 109.47297 * 333.35439 * 17 15 13 21 21 H 1.08998 * 109.47617 * 85.65592 * 1 2 3 22 22 H 1.09001 * 109.46544 * 205.65489 * 1 2 3 23 23 H 1.09004 * 109.47267 * 325.65160 * 1 2 3 24 24 H 1.08000 * 126.01564 * 359.73896 * 3 2 1 25 25 H 1.07999 * 125.81497 * 180.02562 * 4 3 2 26 26 H 1.07996 * 119.97607 * 0.02562 * 8 7 6 27 27 H 1.07993 * 119.70120 * 180.25256 * 9 8 7 28 28 H 1.08005 * 119.71763 * 179.71347 * 10 9 8 29 29 H 1.08004 * 120.03192 * 180.02562 * 11 10 9 30 30 H 0.97007 * 120.00316 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3059 1.0919 0.0000 4 6 3.6354 0.6543 0.0061 5 7 3.6388 -0.6543 0.0102 6 7 2.3095 -1.0966 0.0059 7 6 1.8854 -2.4256 0.0088 8 6 0.9063 -2.8483 -0.8757 9 6 0.4932 -4.1679 -0.8723 10 6 1.0430 -5.0782 0.0204 11 6 2.0052 -4.6873 0.9058 12 6 2.4468 -3.3512 0.9185 13 6 3.4408 -2.9387 1.8311 14 1 4.1143 -2.1359 1.5696 15 6 3.5538 -3.5697 3.0754 16 7 4.6275 -3.3952 3.8022 17 14 2.1716 -4.6612 3.6981 18 1 2.4437 -6.0704 3.3168 19 1 2.0859 -4.5562 5.1768 20 1 0.8865 -4.2247 3.0955 21 1 -0.3634 0.0778 -1.0247 22 1 -0.3632 -0.9264 0.4449 23 1 -0.3634 0.8485 0.5798 24 1 1.9758 2.1203 -0.0040 25 1 4.5095 1.2885 0.0080 26 1 0.4687 -2.1477 -1.5714 27 1 -0.2674 -4.4924 -1.5668 28 1 0.7065 -6.1045 0.0138 29 1 2.4272 -5.4027 1.5962 30 1 4.7060 -3.8328 4.6644 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259746956.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:14 Heat of formation + Delta-G solvation = 96.924733 kcal Electronic energy + Delta-G solvation = -15377.162194 eV Core-core repulsion = 12945.845874 eV Total energy + Delta-G solvation = -2431.316321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.56835 -37.81358 -33.81511 -32.58186 -31.55865 -30.47440 -28.16204 -26.38736 -25.18435 -22.12927 -21.60070 -19.84315 -18.95191 -17.55247 -16.61964 -15.45210 -14.78175 -14.33595 -13.95967 -13.80068 -13.17837 -13.14081 -12.61326 -12.42859 -12.31435 -12.10782 -11.78357 -11.53395 -11.02395 -10.96011 -10.50112 -10.03268 -9.94894 -9.66867 -9.35464 -8.81823 -8.06542 -7.85095 -7.31627 -7.05656 -4.58646 2.05329 2.46849 2.89818 3.00379 3.13435 3.20414 3.49671 3.53860 3.85740 4.34601 5.14862 5.29134 5.59454 5.61638 5.78863 5.87036 5.91428 6.10998 6.17157 6.29732 6.38017 6.44412 6.64132 6.79657 6.96455 6.99493 7.25142 7.42022 7.50446 7.66122 7.84732 8.11191 8.34910 8.56271 8.61290 8.71974 9.93003 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.012562 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.139702 B = 2228.329821 C = 2961.694382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.069 3.931 3 C -0.288 4.288 4 C 0.017 3.983 5 N -0.272 5.272 6 N -0.268 5.268 7 C 0.008 3.992 8 C -0.066 4.066 9 C -0.242 4.242 10 C -0.070 4.070 11 C -0.226 4.226 12 C 0.100 3.900 13 C -0.420 4.420 14 H 0.117 0.883 15 C 0.079 3.921 16 N -0.791 5.791 17 Si 0.913 3.087 18 H -0.267 1.267 19 H -0.289 1.289 20 H -0.243 1.243 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.075 0.925 24 H 0.137 0.863 25 H 0.173 0.827 26 H 0.101 0.899 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 2.862 -3.510 8.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.318 4.318 4 C -0.167 4.167 5 N -0.092 5.092 6 N -0.043 5.043 7 C -0.084 4.084 8 C -0.087 4.087 9 C -0.262 4.262 10 C -0.089 4.089 11 C -0.246 4.246 12 C 0.095 3.905 13 C -0.447 4.447 14 H 0.135 0.865 15 C -0.141 4.141 16 N -0.413 5.413 17 Si 0.739 3.261 18 H -0.193 1.193 19 H -0.217 1.217 20 H -0.166 1.166 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.094 0.906 24 H 0.154 0.846 25 H 0.190 0.810 26 H 0.119 0.881 27 H 0.120 0.880 28 H 0.117 0.883 29 H 0.124 0.876 30 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.123 1.731 -3.256 7.148 hybrid contribution -0.795 0.292 0.443 0.955 sum -6.918 2.022 -2.813 7.737 Atomic orbital electron populations 1.20384 0.88254 1.03499 1.02339 1.21199 0.94366 0.87286 1.02997 1.20975 0.92580 0.98080 1.20146 1.23718 0.97578 0.92743 1.02708 1.77553 0.97413 1.11899 1.22318 1.45406 1.02971 1.03702 1.52196 1.17308 1.04251 0.80568 1.06245 1.20517 0.96695 0.95748 0.95698 1.20162 1.07360 0.93127 1.05573 1.20432 0.95444 0.97834 0.95142 1.20700 1.04237 0.95420 1.04243 1.17514 0.91368 0.90314 0.91336 1.19956 1.11375 1.15812 0.97534 0.86524 1.26335 0.96246 0.94745 0.96818 1.69671 1.25340 1.34871 1.11452 0.86311 0.83185 0.79921 0.76674 1.19340 1.21692 1.16572 0.91040 0.90803 0.90571 0.84552 0.81042 0.88118 0.87987 0.88299 0.87566 0.90104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.32 9.15 36.01 0.33 -0.99 16 2 C 0.07 1.36 6.78 -81.84 -0.55 0.80 16 3 C -0.29 -5.28 10.72 -39.98 -0.43 -5.71 16 4 C 0.02 0.34 12.02 -17.31 -0.21 0.13 16 5 N -0.27 -6.55 10.32 30.65 0.32 -6.24 16 6 N -0.27 -6.28 3.38 -6.46 -0.02 -6.30 16 7 C 0.01 0.20 5.97 -83.05 -0.50 -0.30 16 8 C -0.07 -1.38 8.51 -39.45 -0.34 -1.72 16 9 C -0.24 -4.80 10.04 -39.35 -0.39 -5.20 16 10 C -0.07 -1.45 9.97 -39.99 -0.40 -1.85 16 11 C -0.23 -5.36 7.00 -39.27 -0.27 -5.63 16 12 C 0.10 2.57 5.15 -106.67 -0.55 2.02 16 13 C -0.42 -11.67 9.09 -37.85 -0.34 -12.01 16 14 H 0.12 3.52 6.03 -52.49 -0.32 3.21 16 15 C 0.08 2.09 5.45 -17.33 -0.09 2.00 16 16 N -0.79 -21.16 13.93 55.55 0.77 -20.38 16 17 Si 0.91 20.50 24.42 -169.99 -4.15 16.35 16 18 H -0.27 -5.73 6.66 56.52 0.38 -5.36 16 19 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 20 H -0.24 -5.54 6.73 56.52 0.38 -5.16 16 21 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.07 1.20 7.19 -51.93 -0.37 0.83 16 23 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.14 2.02 8.06 -52.49 -0.42 1.59 16 25 H 0.17 2.74 8.06 -52.49 -0.42 2.32 16 26 H 0.10 1.86 7.47 -52.49 -0.39 1.47 16 27 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 28 H 0.10 1.74 8.06 -52.48 -0.42 1.32 16 29 H 0.11 2.48 4.43 -52.48 -0.23 2.24 16 30 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 LS Contribution 254.31 15.07 3.83 3.83 Total: -1.00 -29.64 254.31 -6.03 -35.67 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -3.03 Total: 5.51 kcal Atomic # 6 Polarization: -24.70 SS G_CDS: -3.75 Total: -28.45 kcal Atomic # 7 Polarization: -33.99 SS G_CDS: 1.07 Total: -32.92 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.15 Total: 16.35 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.64 -6.03 -35.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746956.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.597 kcal (2) G-P(sol) polarization free energy of solvation -29.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds