Wall clock time and date at job start Mon Mar 30 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35297 * 126.18905 * 2 1 4 4 C 1.39972 * 107.96826 * 179.73836 * 3 2 1 5 5 N 1.30864 * 108.37080 * 359.97438 * 4 3 2 6 6 N 1.35888 * 126.19433 * 179.69223 * 2 1 3 7 7 C 1.39503 * 126.10685 * 0.21419 * 6 2 1 8 8 C 1.38556 * 120.27364 * 47.54975 * 7 6 2 9 9 C 1.38272 * 120.04086 * 179.74591 * 8 7 6 10 10 C 1.38837 * 120.60194 * 0.55804 * 9 8 7 11 11 C 1.36481 * 120.56169 * 359.69911 * 10 9 8 12 12 C 1.40730 * 119.93804 * 0.02562 * 11 10 9 13 13 C 1.41095 * 120.29767 * 179.97438 * 12 11 10 14 14 H 1.08001 * 120.00082 * 149.90942 * 13 12 11 15 15 C 1.39975 * 120.00118 * 329.90525 * 13 12 11 16 16 N 1.30823 * 120.00170 * 165.60582 * 15 13 12 17 17 Si 1.86803 * 119.99849 * 345.60715 * 15 13 12 18 18 H 1.48497 * 109.46931 * 93.35082 * 17 15 13 19 19 H 1.48496 * 109.47143 * 213.35171 * 17 15 13 20 20 H 1.48500 * 109.47297 * 333.35439 * 17 15 13 21 21 H 1.08998 * 109.47617 * 85.65592 * 1 2 3 22 22 H 1.09001 * 109.46544 * 205.65489 * 1 2 3 23 23 H 1.09004 * 109.47267 * 325.65160 * 1 2 3 24 24 H 1.08000 * 126.01564 * 359.73896 * 3 2 1 25 25 H 1.07999 * 125.81497 * 180.02562 * 4 3 2 26 26 H 1.07996 * 119.97607 * 0.02562 * 8 7 6 27 27 H 1.07993 * 119.70120 * 180.25256 * 9 8 7 28 28 H 1.08005 * 119.71763 * 179.71347 * 10 9 8 29 29 H 1.08004 * 120.03192 * 180.02562 * 11 10 9 30 30 H 0.97007 * 120.00316 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3059 1.0919 0.0000 4 6 3.6354 0.6543 0.0061 5 7 3.6388 -0.6543 0.0102 6 7 2.3095 -1.0966 0.0059 7 6 1.8854 -2.4256 0.0088 8 6 0.9063 -2.8483 -0.8757 9 6 0.4932 -4.1679 -0.8723 10 6 1.0430 -5.0782 0.0204 11 6 2.0052 -4.6873 0.9058 12 6 2.4468 -3.3512 0.9185 13 6 3.4408 -2.9387 1.8311 14 1 4.1143 -2.1359 1.5696 15 6 3.5538 -3.5697 3.0754 16 7 4.6275 -3.3952 3.8022 17 14 2.1716 -4.6612 3.6981 18 1 2.4437 -6.0704 3.3168 19 1 2.0859 -4.5562 5.1768 20 1 0.8865 -4.2247 3.0955 21 1 -0.3634 0.0778 -1.0247 22 1 -0.3632 -0.9264 0.4449 23 1 -0.3634 0.8485 0.5798 24 1 1.9758 2.1203 -0.0040 25 1 4.5095 1.2885 0.0080 26 1 0.4687 -2.1477 -1.5714 27 1 -0.2674 -4.4924 -1.5668 28 1 0.7065 -6.1045 0.0138 29 1 2.4272 -5.4027 1.5962 30 1 4.7060 -3.8328 4.6644 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259746956.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:14 Heat of formation + Delta-G solvation = 78.756824 kcal Electronic energy + Delta-G solvation = -15377.950014 eV Core-core repulsion = 12945.845874 eV Total energy + Delta-G solvation = -2432.104140 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.14745 -39.53755 -35.65882 -34.19875 -33.08249 -32.19931 -29.82870 -27.79713 -26.99174 -23.79346 -23.32795 -21.43964 -20.55490 -19.41302 -18.23540 -17.18525 -16.44732 -15.99866 -15.56426 -15.42787 -14.78394 -14.70540 -14.25115 -13.94685 -13.76104 -13.56497 -13.47536 -12.97795 -12.79544 -12.57445 -12.17828 -11.80640 -11.71420 -11.30376 -11.15202 -10.48112 -9.63695 -9.61514 -9.00789 -8.91177 -6.53450 0.37150 0.71490 1.19479 1.26172 1.41556 1.42799 1.93842 2.02486 2.07134 2.53994 3.33489 3.92163 4.07212 4.19786 4.32813 4.38120 4.60949 4.72271 4.75602 4.81602 4.90458 4.94615 5.05266 5.20501 5.28058 5.37209 5.60546 5.73595 5.88295 5.98035 6.14960 6.32968 6.45551 6.69941 6.86666 7.04407 8.12078 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.012562 C = 0.009452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.139702 B = 2228.329821 C = 2961.694382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.058 3.942 3 C -0.285 4.285 4 C 0.015 3.985 5 N -0.336 5.336 6 N -0.294 5.294 7 C -0.003 4.003 8 C -0.072 4.072 9 C -0.214 4.214 10 C -0.072 4.072 11 C -0.242 4.242 12 C 0.076 3.924 13 C -0.467 4.467 14 H 0.074 0.926 15 C 0.039 3.961 16 N -0.845 5.845 17 Si 0.970 3.030 18 H -0.250 1.250 19 H -0.280 1.280 20 H -0.248 1.248 21 H 0.100 0.900 22 H 0.060 0.940 23 H 0.104 0.896 24 H 0.177 0.823 25 H 0.201 0.799 26 H 0.129 0.871 27 H 0.148 0.852 28 H 0.140 0.860 29 H 0.104 0.896 30 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.512 2.665 -5.194 12.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.068 4.068 3 C -0.314 4.314 4 C -0.170 4.170 5 N -0.156 5.156 6 N -0.070 5.070 7 C -0.095 4.095 8 C -0.092 4.092 9 C -0.233 4.233 10 C -0.090 4.090 11 C -0.262 4.262 12 C 0.072 3.928 13 C -0.496 4.496 14 H 0.092 0.908 15 C -0.176 4.176 16 N -0.470 5.470 17 Si 0.793 3.207 18 H -0.175 1.175 19 H -0.207 1.207 20 H -0.172 1.172 21 H 0.118 0.882 22 H 0.079 0.921 23 H 0.122 0.878 24 H 0.194 0.806 25 H 0.218 0.782 26 H 0.147 0.853 27 H 0.166 0.834 28 H 0.157 0.843 29 H 0.122 0.878 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.586 1.536 -4.957 10.901 hybrid contribution 0.142 0.479 0.682 0.845 sum -9.445 2.015 -4.275 10.561 Atomic orbital electron populations 1.20548 0.84943 1.04059 1.04548 1.22127 0.96545 0.86540 1.01566 1.21478 0.91464 0.99697 1.18753 1.24395 0.99768 0.92002 1.00823 1.77496 0.99073 1.14141 1.24885 1.45547 1.03204 1.04247 1.54032 1.17773 1.04444 0.81221 1.06030 1.20901 0.95847 0.97091 0.95368 1.20803 1.06120 0.92105 1.04272 1.20912 0.94130 1.00131 0.93870 1.20864 1.05408 0.94496 1.05391 1.17795 0.91505 0.91863 0.91662 1.19809 1.13336 1.16762 0.99711 0.90758 1.27052 0.98187 0.95895 0.96429 1.69718 1.27189 1.37625 1.12508 0.85443 0.79835 0.78978 0.76426 1.17508 1.20711 1.17180 0.88169 0.92070 0.87786 0.80585 0.78187 0.85278 0.83389 0.84257 0.87835 0.89494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.24 9.15 71.24 0.65 -1.59 16 2 C 0.06 2.21 6.78 41.25 0.28 2.49 16 3 C -0.28 -9.92 10.72 22.01 0.24 -9.68 16 4 C 0.01 0.59 12.02 85.26 1.02 1.61 16 5 N -0.34 -16.87 10.32 -56.94 -0.59 -17.45 16 6 N -0.29 -13.92 3.38 -174.34 -0.59 -14.51 16 7 C 0.00 -0.13 5.97 38.78 0.23 0.10 16 8 C -0.07 -2.78 8.51 22.35 0.19 -2.59 16 9 C -0.21 -7.40 10.04 22.42 0.23 -7.17 16 10 C -0.07 -2.72 9.97 22.00 0.22 -2.50 16 11 C -0.24 -11.21 7.00 22.47 0.16 -11.05 16 12 C 0.08 4.01 5.15 -21.19 -0.11 3.90 16 13 C -0.47 -27.69 9.09 23.39 0.21 -27.47 16 14 H 0.07 4.91 6.03 -2.91 -0.02 4.89 16 15 C 0.04 2.17 5.45 85.26 0.46 2.64 16 16 N -0.84 -48.30 13.93 21.83 0.30 -48.00 16 17 Si 0.97 43.16 24.42 68.60 1.68 44.83 16 18 H -0.25 -10.24 6.66 99.48 0.66 -9.58 16 19 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 20 H -0.25 -11.05 6.73 99.48 0.67 -10.39 16 21 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 22 H 0.06 1.82 7.19 -2.39 -0.02 1.80 16 23 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 24 H 0.18 4.55 8.06 -2.91 -0.02 4.52 16 25 H 0.20 6.36 8.06 -2.91 -0.02 6.34 16 26 H 0.13 4.22 7.47 -2.91 -0.02 4.19 16 27 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 28 H 0.14 4.12 8.06 -2.91 -0.02 4.10 16 29 H 0.10 4.77 4.43 -2.91 -0.01 4.75 16 30 H 0.29 15.03 8.30 -92.70 -0.77 14.26 16 Total: -1.00 -70.14 254.31 5.65 -64.48 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 1.07 Total: 21.97 kcal Atomic # 6 Polarization: -55.11 SS G_CDS: 3.78 Total: -51.33 kcal Atomic # 7 Polarization: -79.08 SS G_CDS: -0.87 Total: -79.96 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.68 Total: 44.83 kcal Total: -70.14 5.65 -64.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259746956.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.240 kcal (2) G-P(sol) polarization free energy of solvation -70.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds