Wall clock time and date at job start Mon Mar 30 2020 03:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35316 * 126.14169 * 2 1 4 4 C 1.39925 * 107.93495 * 179.97438 * 3 2 1 5 5 N 1.30878 * 108.23781 * 359.97438 * 4 3 2 6 6 N 1.35227 * 126.14688 * 179.97438 * 2 1 3 7 7 C 1.40199 * 126.05199 * 359.97380 * 6 2 1 8 8 C 1.39248 * 119.94330 * 41.17944 * 7 6 2 9 9 C 1.38492 * 120.43259 * 179.97438 * 8 7 6 10 10 C 1.37680 * 120.31798 * 359.97425 * 9 8 7 11 11 C 1.40735 * 119.87845 * 0.02562 * 10 9 8 12 12 C 1.41404 * 120.21072 * 179.97438 * 11 10 9 13 13 H 1.08005 * 120.00794 * 27.88261 * 12 11 10 14 14 C 1.39942 * 119.99700 * 207.88599 * 12 11 10 15 15 N 1.30822 * 119.99970 * 12.95254 * 14 12 11 16 16 Si 1.86801 * 119.99818 * 192.95493 * 14 12 11 17 17 H 1.48494 * 109.47170 * 89.99784 * 16 14 12 18 18 H 1.48504 * 109.47160 * 210.00080 * 16 14 12 19 19 H 1.48502 * 109.46946 * 329.99579 * 16 14 12 20 20 C 1.38204 * 119.93970 * 220.89984 * 7 6 2 21 21 H 1.09001 * 109.46850 * 87.66040 * 1 2 3 22 22 H 1.09000 * 109.46832 * 207.65636 * 1 2 3 23 23 H 1.08995 * 109.47636 * 327.65984 * 1 2 3 24 24 H 1.08005 * 126.03649 * 0.25555 * 3 2 1 25 25 H 1.08004 * 125.88123 * 180.02562 * 4 3 2 26 26 H 1.08004 * 119.78531 * 359.95126 * 8 7 6 27 27 H 1.08007 * 119.83882 * 179.97438 * 9 8 7 28 28 H 1.08005 * 120.05946 * 180.02562 * 10 9 8 29 29 H 0.97000 * 119.99726 * 180.02562 * 15 14 12 30 30 H 1.07998 * 120.16283 * 359.97438 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0928 0.0000 4 6 3.6342 0.6556 0.0006 5 7 3.6349 -0.6532 0.0015 6 7 2.3046 -1.0920 0.0005 7 6 1.8760 -2.4268 0.0016 8 6 0.7986 -2.8115 -0.7922 9 6 0.3670 -4.1275 -0.7993 10 6 0.9998 -5.0706 -0.0210 11 6 2.0902 -4.6963 0.7863 12 6 2.7449 -5.6591 1.5887 13 1 2.7508 -6.6971 1.2903 14 6 3.3853 -5.2670 2.7696 15 7 3.1708 -4.0755 3.2654 16 14 4.5463 -6.4449 3.6380 17 1 5.9247 -6.2530 3.1201 18 1 4.5241 -6.1753 5.0982 19 1 4.1128 -7.8427 3.3861 20 6 2.5273 -3.3597 0.7862 21 1 -0.3633 0.0420 -1.0268 22 1 -0.3633 -0.9103 0.4770 23 1 -0.3634 0.8682 0.5497 24 1 1.9745 2.1210 0.0039 25 1 4.5090 1.2891 0.0011 26 1 0.2958 -2.0788 -1.4061 27 1 -0.4699 -4.4153 -1.4183 28 1 0.6601 -6.0958 -0.0301 29 1 3.6150 -3.8036 4.0837 30 1 3.3662 -3.0632 1.3983 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259839744.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:16 Heat of formation + Delta-G solvation = 89.329322 kcal Electronic energy + Delta-G solvation = -15016.723625 eV Core-core repulsion = 12585.077943 eV Total energy + Delta-G solvation = -2431.645682 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.81211 -37.56629 -33.98037 -32.48983 -31.62530 -29.68831 -27.91069 -26.53164 -25.41332 -22.16985 -21.33478 -19.99671 -19.09740 -17.39072 -16.11210 -15.18375 -14.86805 -14.71196 -14.00088 -13.72387 -13.12322 -12.84159 -12.61559 -12.49794 -12.36428 -11.77583 -11.61970 -11.29438 -11.17900 -10.76588 -10.58425 -10.12664 -9.91810 -9.84044 -9.41646 -8.97605 -8.22064 -7.57509 -7.21675 -6.83123 -4.51810 2.05625 2.70217 2.98744 3.03910 3.07088 3.13381 3.26552 3.31373 3.87369 4.48111 5.14364 5.30151 5.49123 5.55240 5.79477 5.97700 6.05580 6.13279 6.21735 6.24413 6.58993 6.61683 6.87334 6.91427 7.04711 7.13676 7.28954 7.60283 7.68112 7.76320 7.92359 8.18254 8.37894 8.49276 8.74439 8.76120 10.10823 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.028821 B = 0.008685 C = 0.007168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.271895 B = 3223.139959 C = 3905.163655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.085 3.915 3 C -0.290 4.290 4 C 0.029 3.971 5 N -0.288 5.288 6 N -0.293 5.293 7 C 0.140 3.860 8 C -0.245 4.245 9 C -0.080 4.080 10 C -0.221 4.221 11 C 0.117 3.883 12 C -0.458 4.458 13 H 0.083 0.917 14 C 0.073 3.927 15 N -0.792 5.792 16 Si 0.914 3.086 17 H -0.266 1.266 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.137 4.137 21 H 0.075 0.925 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.141 0.859 25 H 0.177 0.823 26 H 0.097 0.903 27 H 0.099 0.901 28 H 0.100 0.900 29 H 0.283 0.717 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.693 5.422 -2.670 6.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.043 4.043 3 C -0.320 4.320 4 C -0.156 4.156 5 N -0.108 5.108 6 N -0.068 5.068 7 C 0.051 3.949 8 C -0.266 4.266 9 C -0.099 4.099 10 C -0.240 4.240 11 C 0.113 3.887 12 C -0.487 4.487 13 H 0.101 0.899 14 C -0.146 4.146 15 N -0.417 5.417 16 Si 0.738 3.262 17 H -0.191 1.191 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.158 4.158 21 H 0.093 0.907 22 H 0.098 0.902 23 H 0.095 0.905 24 H 0.159 0.841 25 H 0.194 0.806 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.094 0.906 30 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.924 4.422 -2.446 5.407 hybrid contribution 0.099 0.441 0.506 0.679 sum -1.825 4.863 -1.940 5.544 Atomic orbital electron populations 1.20485 0.87805 1.03808 1.02740 1.21152 0.94789 0.87136 1.01196 1.21079 0.92439 0.98381 1.20086 1.23769 0.97822 0.92481 1.01545 1.77512 0.97220 1.12466 1.23639 1.46006 1.03322 1.04565 1.52936 1.17472 0.97860 0.79313 1.00248 1.20168 1.03005 0.96615 1.06819 1.20356 0.98625 0.92435 0.98521 1.21126 0.99472 0.98367 1.05075 1.17486 0.89428 0.91678 0.90075 1.19600 1.29014 0.95700 1.04389 0.89900 1.25963 0.95494 0.95796 0.97314 1.69775 1.34531 1.19078 1.18313 0.86216 0.80715 0.80998 0.78280 1.19150 1.20194 1.18480 1.21293 1.01636 0.92971 0.99903 0.90670 0.90233 0.90481 0.84145 0.80584 0.88495 0.88270 0.88231 0.90602 0.85064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.36 8.78 36.00 0.32 -1.04 16 2 C 0.08 1.62 6.75 -82.14 -0.55 1.07 16 3 C -0.29 -4.98 10.72 -39.99 -0.43 -5.41 16 4 C 0.03 0.53 12.03 -17.33 -0.21 0.32 16 5 N -0.29 -6.55 12.40 30.64 0.38 -6.17 16 6 N -0.29 -6.70 3.70 -7.03 -0.03 -6.73 16 7 C 0.14 3.44 6.10 -83.67 -0.51 2.93 16 8 C -0.24 -5.38 8.34 -39.11 -0.33 -5.71 16 9 C -0.08 -1.72 10.02 -39.69 -0.40 -2.12 16 10 C -0.22 -5.21 9.79 -38.84 -0.38 -5.59 16 11 C 0.12 3.08 5.55 -106.85 -0.59 2.49 16 12 C -0.46 -11.98 9.06 -37.74 -0.34 -12.32 16 13 H 0.08 2.05 7.88 -52.48 -0.41 1.64 16 14 C 0.07 1.83 5.21 -17.34 -0.09 1.74 16 15 N -0.79 -20.86 10.92 55.55 0.61 -20.25 16 16 Si 0.91 18.75 29.58 -169.99 -5.03 13.72 16 17 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 18 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 19 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 20 C -0.14 -3.68 8.43 -38.69 -0.33 -4.01 16 21 H 0.07 0.99 7.94 -51.93 -0.41 0.58 16 22 H 0.08 1.32 7.02 -51.93 -0.36 0.95 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 25 H 0.18 2.45 8.06 -52.48 -0.42 2.03 16 26 H 0.10 1.90 6.74 -52.48 -0.35 1.54 16 27 H 0.10 1.78 8.06 -52.48 -0.42 1.36 16 28 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 29 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 30 H 0.13 3.80 6.26 -52.49 -0.33 3.47 16 LS Contribution 263.19 15.07 3.97 3.97 Total: -1.00 -29.26 263.19 -7.06 -36.33 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -3.12 Total: 6.80 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: -3.84 Total: -27.66 kcal Atomic # 7 Polarization: -34.11 SS G_CDS: 0.96 Total: -33.15 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.26 -7.06 -36.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259839744.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.657 kcal (2) G-P(sol) polarization free energy of solvation -29.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds