Wall clock time and date at job start Mon Mar 30 2020 02:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99752 * 2 1 4 4 H 1.48496 * 109.47371 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47265 * 299.99908 * 3 2 1 6 6 H 1.48504 * 109.47103 * 59.99559 * 3 2 1 7 7 C 1.37880 * 120.00166 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99475 * 183.15157 * 7 2 1 9 9 C 1.50698 * 120.00139 * 3.15294 * 7 2 1 10 10 C 1.50702 * 115.54729 * 324.39952 * 9 7 2 11 11 C 1.37896 * 120.15482 * 113.36038 * 10 9 7 12 12 C 1.38728 * 120.45260 * 180.02562 * 11 10 9 13 13 C 1.36635 * 120.67069 * 359.97438 * 12 11 10 14 14 C 1.39705 * 119.88579 * 0.04155 * 13 12 11 15 15 N 1.35787 * 133.60802 * 179.97438 * 14 13 12 16 16 C 1.30101 * 109.64745 * 179.97438 * 15 14 13 17 17 N 1.36043 * 110.10945 * 359.97438 * 16 15 14 18 18 H 0.97000 * 126.35019 * 179.97438 * 17 16 15 19 19 C 1.38059 * 107.29909 * 0.02562 * 17 16 15 20 20 C 1.52992 * 117.49837 * 110.06999 * 9 7 2 21 21 C 1.53002 * 117.49714 * 178.73143 * 9 7 2 22 22 H 0.96994 * 120.00712 * 355.00400 * 1 2 3 23 23 H 1.08001 * 119.76979 * 359.74516 * 11 10 9 24 24 H 1.08004 * 119.66401 * 179.97438 * 12 11 10 25 25 H 1.07996 * 120.06343 * 179.97438 * 13 12 11 26 26 H 1.08004 * 124.94478 * 179.97438 * 16 15 14 27 27 H 1.09002 * 117.50236 * 215.00406 * 20 9 7 28 28 H 1.09006 * 117.49820 * 0.02562 * 20 9 7 29 29 H 1.08998 * 117.50076 * 359.97438 * 21 9 7 30 30 H 1.08994 * 117.49926 * 144.97600 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0834 -1.1946 0.0520 9 6 1.2529 -2.4982 -0.0707 10 6 -0.0658 -2.5290 0.6583 11 6 -1.2446 -2.6491 -0.0471 12 6 -2.4619 -2.6775 0.6177 13 6 -2.5144 -2.5876 1.9800 14 6 -1.3330 -2.4650 2.7156 15 7 -1.0624 -2.3573 4.0419 16 6 0.2232 -2.2671 4.2201 17 7 0.8658 -2.3111 3.0218 18 1 1.8243 -2.2624 2.8813 19 6 -0.0994 -2.4368 2.0428 20 6 1.3642 -3.3081 -1.3639 21 6 2.0761 -3.7876 -0.0964 22 1 -0.4851 0.8367 0.0731 23 1 -1.2201 -2.7170 -1.1246 24 1 -3.3774 -2.7715 0.0525 25 1 -3.4674 -2.6104 2.4874 26 1 0.7095 -2.1712 5.1797 27 1 0.4838 -3.8632 -1.6876 28 1 1.9816 -2.8978 -2.1631 29 1 3.1614 -3.6926 -0.0623 30 1 1.6642 -4.6580 0.4141 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865351.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:59 Heat of formation + Delta-G solvation = 93.086714 kcal Electronic energy + Delta-G solvation = -15668.778475 eV Core-core repulsion = 13237.295725 eV Total energy + Delta-G solvation = -2431.482750 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.11800 -37.36212 -35.31851 -32.25769 -31.86468 -28.75021 -28.29087 -25.72929 -22.61927 -21.76834 -21.09427 -20.69790 -19.03611 -17.36299 -16.36124 -15.54849 -14.84533 -14.72625 -14.19682 -13.87848 -13.23594 -13.09056 -12.74533 -11.95666 -11.38025 -11.11229 -10.95977 -10.89629 -10.70472 -10.47520 -10.40660 -9.94410 -9.73078 -9.18133 -9.08176 -8.86516 -8.37714 -7.35454 -7.04368 -5.96918 -4.23380 2.04923 2.63731 3.17689 3.27926 3.28899 3.72774 3.93325 4.26817 4.84692 4.95555 5.05611 5.43334 5.57246 5.85250 6.04202 6.14448 6.24792 6.31241 6.47567 6.54023 6.61395 6.71243 6.83068 6.93003 7.16243 7.18572 7.51004 7.56193 7.69881 7.78949 7.95477 8.22297 8.26314 8.70183 8.76032 9.38185 10.87884 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.022178 B = 0.012725 C = 0.011258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.226617 B = 2199.803409 C = 2486.592654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.076 3.924 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.284 1.284 7 C -0.504 4.504 8 H 0.062 0.938 9 C 0.074 3.926 10 C 0.063 3.937 11 C -0.095 4.095 12 C -0.119 4.119 13 C -0.107 4.107 14 C 0.033 3.967 15 N -0.511 5.511 16 C 0.231 3.769 17 N -0.587 5.587 18 H 0.422 0.578 19 C 0.079 3.921 20 C -0.200 4.200 21 C -0.207 4.207 22 H 0.263 0.737 23 H 0.112 0.888 24 H 0.110 0.890 25 H 0.108 0.892 26 H 0.202 0.798 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.473 -4.290 2.962 5.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.131 4.131 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.210 1.210 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.074 3.926 10 C 0.060 3.940 11 C -0.115 4.115 12 C -0.140 4.140 13 C -0.127 4.127 14 C -0.084 4.084 15 N -0.233 5.233 16 C -0.056 4.056 17 N -0.197 5.197 18 H 0.261 0.739 19 C -0.031 4.031 20 C -0.238 4.238 21 C -0.244 4.244 22 H 0.074 0.926 23 H 0.130 0.870 24 H 0.128 0.872 25 H 0.126 0.874 26 H 0.218 0.782 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.387 -4.139 3.526 5.451 hybrid contribution 1.574 1.197 -0.691 2.095 sum 1.186 -2.941 2.834 4.254 Atomic orbital electron populations 1.70010 1.05507 1.26779 1.46348 1.25019 0.94923 0.99037 0.94093 0.86571 0.80077 0.83825 0.77832 1.19739 1.20723 1.21004 1.20476 0.92335 0.88079 1.53177 0.91953 1.17845 0.90675 0.90178 0.93933 1.18008 0.94690 0.93337 0.87924 1.20363 0.90822 1.01633 0.98708 1.20382 0.97370 1.02666 0.93532 1.19550 0.94866 1.05231 0.93046 1.18892 0.93365 1.07106 0.89051 1.70275 1.13367 1.22580 1.17093 1.24965 0.88906 1.01387 0.90387 1.43015 1.09845 1.60910 1.05920 0.73945 1.18544 0.88254 1.05318 0.90939 1.23049 1.01575 1.06521 0.92675 1.22938 0.98091 0.99577 1.03844 0.92635 0.86966 0.87222 0.87357 0.78180 0.91107 0.90166 0.90410 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.95 10.81 55.43 0.60 -22.35 16 2 C 0.08 1.96 5.39 -17.82 -0.10 1.86 16 3 Si 0.89 20.33 29.54 -169.99 -5.02 15.31 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 7 C -0.50 -12.75 9.00 -34.44 -0.31 -13.06 16 8 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 9 C 0.07 1.73 2.04 -156.82 -0.32 1.41 16 10 C 0.06 1.48 3.06 -104.54 -0.32 1.16 16 11 C -0.10 -2.11 8.48 -39.53 -0.34 -2.44 16 12 C -0.12 -2.41 9.96 -39.98 -0.40 -2.81 16 13 C -0.11 -2.24 10.05 -39.61 -0.40 -2.64 16 14 C 0.03 0.75 7.23 -84.70 -0.61 0.14 16 15 N -0.51 -10.73 11.27 -12.05 -0.14 -10.87 16 16 C 0.23 4.05 12.97 -89.79 -1.16 2.88 16 17 N -0.59 -11.34 6.23 -11.76 -0.07 -11.41 16 18 H 0.42 7.38 8.96 -40.82 -0.37 7.01 16 19 C 0.08 1.79 6.95 -83.99 -0.58 1.21 16 20 C -0.20 -4.27 9.43 -26.70 -0.25 -4.52 16 21 C -0.21 -4.23 9.94 -26.69 -0.27 -4.50 16 22 H 0.26 6.99 8.32 -40.82 -0.34 6.65 16 23 H 0.11 2.42 7.09 -52.49 -0.37 2.05 16 24 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 25 H 0.11 2.02 8.06 -52.49 -0.42 1.60 16 26 H 0.20 2.39 8.06 -52.48 -0.42 1.96 16 27 H 0.07 1.42 7.21 -51.93 -0.37 1.04 16 28 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 261.66 15.07 3.94 3.94 Total: -1.00 -29.56 261.66 -8.94 -38.49 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -3.19 Total: 8.20 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -5.06 Total: -21.31 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.39 Total: -44.63 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.56 -8.94 -38.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865351.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.581 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds