Wall clock time and date at job start Mon Mar 30 2020 03:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47451 * 2 1 4 4 C 1.50702 * 109.46859 * 120.00545 * 2 1 3 5 5 H 1.08003 * 119.99973 * 114.46141 * 4 2 1 6 6 C 1.37880 * 119.99869 * 294.45290 * 4 2 1 7 7 N 1.31514 * 119.99801 * 162.57659 * 6 4 2 8 8 Si 1.86797 * 119.99822 * 342.57980 * 6 4 2 9 9 H 1.48495 * 109.47242 * 269.99412 * 8 6 4 10 10 H 1.48494 * 109.47303 * 30.00209 * 8 6 4 11 11 H 1.48508 * 109.47041 * 149.99824 * 8 6 4 12 12 C 1.50699 * 109.47019 * 239.99945 * 2 1 3 13 13 C 1.39673 * 119.64576 * 325.00516 * 12 2 1 14 14 N 1.31337 * 120.70910 * 179.97438 * 13 12 2 15 15 C 1.33749 * 119.70877 * 0.02562 * 14 13 12 16 16 C 1.40591 * 121.09842 * 179.97438 * 15 14 13 17 17 C 1.36065 * 119.71649 * 180.02562 * 16 15 14 18 18 C 1.39405 * 120.96216 * 0.03980 * 17 16 15 19 19 C 1.36056 * 120.97477 * 359.95942 * 18 17 16 20 20 C 1.40588 * 119.72074 * 0.02562 * 19 18 17 21 21 N 1.31343 * 119.64481 * 144.73050 * 12 2 1 22 22 H 1.08994 * 109.46771 * 305.48955 * 1 2 3 23 23 H 1.08997 * 109.46774 * 65.48091 * 1 2 3 24 24 H 1.08995 * 109.47198 * 185.48188 * 1 2 3 25 25 H 0.97000 * 119.99782 * 357.63276 * 7 6 4 26 26 H 1.07998 * 119.64996 * 0.02562 * 13 12 2 27 27 H 1.07998 * 120.14425 * 0.03832 * 16 15 14 28 28 H 1.07995 * 119.51593 * 180.02562 * 17 16 15 29 29 H 1.08004 * 119.51285 * 179.97438 * 18 17 16 30 30 H 1.08005 * 120.14382 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5774 -1.6379 1.1338 6 6 1.7960 -0.1767 2.4795 7 7 1.9164 -0.9306 3.5503 8 14 1.3049 1.6175 2.6507 9 1 2.5240 2.4525 2.7977 10 1 0.5560 2.0433 1.4412 11 1 0.4442 1.7829 3.8496 12 6 2.0323 -0.7104 -1.2305 13 6 1.3251 -1.8047 -1.7335 14 7 1.7436 -2.4389 -2.8048 15 6 2.8593 -2.0338 -3.4213 16 6 3.3341 -2.6915 -4.5696 17 6 4.4726 -2.2560 -5.1741 18 6 5.1792 -1.1646 -4.6712 19 6 4.7502 -0.5034 -3.5622 20 6 3.5778 -0.9238 -2.9100 21 7 3.1276 -0.2905 -1.8214 22 1 -0.3632 0.5966 0.8367 23 1 -0.3633 0.4265 -0.9350 24 1 -0.3633 -1.0229 0.0982 25 1 2.1377 -1.8706 3.4592 26 1 0.4238 -2.1325 -1.2368 27 1 2.7974 -3.5387 -4.9703 28 1 4.8342 -2.7633 -6.0562 29 1 6.0805 -0.8389 -5.1694 30 1 5.3079 0.3408 -3.1843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259978411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:41 Heat of formation + Delta-G solvation = 57.711541 kcal Electronic energy + Delta-G solvation = -14896.912850 eV Core-core repulsion = 12463.896118 eV Total energy + Delta-G solvation = -2433.016732 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.99227 -37.49583 -34.88131 -33.93321 -31.74926 -30.34097 -29.25671 -25.09547 -24.57145 -23.80455 -21.94154 -20.51003 -18.06367 -17.82323 -17.33242 -16.13256 -14.79298 -14.68688 -14.33826 -14.15442 -13.59893 -13.28154 -12.90176 -12.14305 -11.93637 -11.67423 -11.57738 -11.36945 -11.16627 -10.96883 -10.91022 -10.58528 -10.16179 -9.69261 -9.03303 -8.54732 -8.52140 -8.40814 -8.19006 -6.55044 -4.18743 0.55521 0.96180 2.29150 3.11031 3.37572 3.41661 3.55317 4.37586 4.43523 4.44112 4.57085 4.66654 4.94028 5.14077 5.19401 5.36853 5.39632 5.57008 5.77771 6.08700 6.12608 6.21559 6.29480 6.39150 6.44247 6.54397 6.68070 6.94830 7.02549 7.22752 7.77216 7.87080 8.27419 8.31315 8.76564 9.48819 10.83581 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.043800 B = 0.007065 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.113961 B = 3962.442321 C = 4154.333096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.058 3.942 3 H 0.049 0.951 4 C -0.595 4.595 5 H 0.055 0.945 6 C 0.039 3.961 7 N -0.898 5.898 8 Si 1.044 2.956 9 H -0.284 1.284 10 H -0.269 1.269 11 H -0.285 1.285 12 C 0.167 3.833 13 C 0.089 3.911 14 N -0.437 5.437 15 C 0.052 3.948 16 C -0.078 4.078 17 C -0.119 4.119 18 C -0.108 4.108 19 C -0.085 4.085 20 C 0.086 3.914 21 N -0.441 5.441 22 H 0.060 0.940 23 H 0.028 0.972 24 H 0.053 0.947 25 H 0.270 0.730 26 H 0.174 0.826 27 H 0.132 0.868 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.754 0.121 -14.622 14.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.037 3.963 3 H 0.067 0.933 4 C -0.633 4.633 5 H 0.074 0.926 6 C -0.167 4.167 7 N -0.531 5.531 8 Si 0.871 3.129 9 H -0.211 1.211 10 H -0.195 1.195 11 H -0.211 1.211 12 C 0.012 3.988 13 C -0.087 4.087 14 N -0.151 5.151 15 C -0.072 4.072 16 C -0.098 4.098 17 C -0.139 4.139 18 C -0.128 4.128 19 C -0.105 4.105 20 C -0.039 4.039 21 N -0.156 5.156 22 H 0.079 0.921 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.191 0.809 27 H 0.150 0.850 28 H 0.146 0.854 29 H 0.147 0.853 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.549 1.253 -13.690 13.835 hybrid contribution 0.505 -1.370 -0.999 1.769 sum 2.054 -0.117 -14.689 14.833 Atomic orbital electron populations 1.22290 0.97417 1.01278 0.99611 1.18266 0.92404 0.96597 0.89007 0.93268 1.21706 1.41211 1.10440 0.89919 0.92632 1.25766 0.93868 1.05458 0.91605 1.70827 1.43120 1.08173 1.30970 0.84088 0.77373 0.75361 0.76070 1.21070 1.19477 1.21051 1.23161 0.88783 0.92331 0.94497 1.24061 1.00364 0.92551 0.91750 1.68669 1.11468 1.27158 1.07779 1.19585 0.93971 0.96074 0.97563 1.20725 0.96208 0.99324 0.93499 1.20839 0.95387 0.97304 1.00341 1.20875 0.99974 0.95798 0.96192 1.20803 0.94489 1.00193 0.94998 1.19745 0.96417 0.93846 0.93867 1.68705 1.12261 1.28559 1.06046 0.92132 0.95295 0.92769 0.92030 0.80856 0.84992 0.85402 0.85336 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 7.92 37.16 0.29 -2.69 16 2 C 0.06 1.35 2.17 -92.92 -0.20 1.14 16 3 H 0.05 1.17 6.69 -51.93 -0.35 0.83 16 4 C -0.59 -16.24 8.81 -34.44 -0.30 -16.54 16 5 H 0.06 1.68 7.99 -52.48 -0.42 1.26 16 6 C 0.04 1.09 5.35 -17.82 -0.10 0.99 16 7 N -0.90 -26.80 13.70 55.43 0.76 -26.04 16 8 Si 1.04 24.20 26.36 -169.99 -4.48 19.72 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.27 -5.62 5.46 56.52 0.31 -5.31 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 12 C 0.17 3.69 5.74 -82.27 -0.47 3.21 16 13 C 0.09 1.78 10.31 -17.23 -0.18 1.60 16 14 N -0.44 -8.51 10.46 -10.80 -0.11 -8.62 16 15 C 0.05 0.96 6.59 -84.80 -0.56 0.40 16 16 C -0.08 -1.13 9.99 -39.47 -0.39 -1.52 16 17 C -0.12 -1.40 9.95 -39.93 -0.40 -1.80 16 18 C -0.11 -1.31 9.95 -39.93 -0.40 -1.71 16 19 C -0.09 -1.32 9.98 -39.48 -0.39 -1.71 16 20 C 0.09 1.66 6.59 -84.80 -0.56 1.10 16 21 N -0.44 -9.72 10.38 -7.06 -0.07 -9.80 16 22 H 0.06 1.23 5.08 -51.93 -0.26 0.97 16 23 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 24 H 0.05 1.03 6.79 -51.93 -0.35 0.68 16 25 H 0.27 8.05 8.72 -40.82 -0.36 7.70 16 26 H 0.17 3.10 6.42 -52.49 -0.34 2.76 16 27 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 28 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 29 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 30 H 0.14 1.90 8.06 -52.48 -0.42 1.47 16 LS Contribution 255.96 15.07 3.86 3.86 Total: -1.00 -30.92 255.96 -6.78 -37.70 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -3.08 Total: 0.71 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -3.66 Total: -17.52 kcal Atomic # 7 Polarization: -45.03 SS G_CDS: 0.57 Total: -44.46 kcal Atomic # 14 Polarization: 24.20 SS G_CDS: -4.48 Total: 19.72 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.92 -6.78 -37.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.413 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds