Wall clock time and date at job start Mon Mar 30 2020 03:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.47451 * 2 1 4 4 C 1.50702 * 109.46859 * 120.00545 * 2 1 3 5 5 H 1.08003 * 119.99973 * 114.46141 * 4 2 1 6 6 C 1.37880 * 119.99869 * 294.45290 * 4 2 1 7 7 N 1.31514 * 119.99801 * 162.57659 * 6 4 2 8 8 Si 1.86797 * 119.99822 * 342.57980 * 6 4 2 9 9 H 1.48495 * 109.47242 * 269.99412 * 8 6 4 10 10 H 1.48494 * 109.47303 * 30.00209 * 8 6 4 11 11 H 1.48508 * 109.47041 * 149.99824 * 8 6 4 12 12 C 1.50699 * 109.47019 * 239.99945 * 2 1 3 13 13 C 1.39673 * 119.64576 * 325.00516 * 12 2 1 14 14 N 1.31337 * 120.70910 * 179.97438 * 13 12 2 15 15 C 1.33749 * 119.70877 * 0.02562 * 14 13 12 16 16 C 1.40591 * 121.09842 * 179.97438 * 15 14 13 17 17 C 1.36065 * 119.71649 * 180.02562 * 16 15 14 18 18 C 1.39405 * 120.96216 * 0.03980 * 17 16 15 19 19 C 1.36056 * 120.97477 * 359.95942 * 18 17 16 20 20 C 1.40588 * 119.72074 * 0.02562 * 19 18 17 21 21 N 1.31343 * 119.64481 * 144.73050 * 12 2 1 22 22 H 1.08994 * 109.46771 * 305.48955 * 1 2 3 23 23 H 1.08997 * 109.46774 * 65.48091 * 1 2 3 24 24 H 1.08995 * 109.47198 * 185.48188 * 1 2 3 25 25 H 0.97000 * 119.99782 * 357.63276 * 7 6 4 26 26 H 1.07998 * 119.64996 * 0.02562 * 13 12 2 27 27 H 1.07998 * 120.14425 * 0.03832 * 16 15 14 28 28 H 1.07995 * 119.51593 * 180.02562 * 17 16 15 29 29 H 1.08004 * 119.51285 * 179.97438 * 18 17 16 30 30 H 1.08005 * 120.14382 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.5774 -1.6379 1.1338 6 6 1.7960 -0.1767 2.4795 7 7 1.9164 -0.9306 3.5503 8 14 1.3049 1.6175 2.6507 9 1 2.5240 2.4525 2.7977 10 1 0.5560 2.0433 1.4412 11 1 0.4442 1.7829 3.8496 12 6 2.0323 -0.7104 -1.2305 13 6 1.3251 -1.8047 -1.7335 14 7 1.7436 -2.4389 -2.8048 15 6 2.8593 -2.0338 -3.4213 16 6 3.3341 -2.6915 -4.5696 17 6 4.4726 -2.2560 -5.1741 18 6 5.1792 -1.1646 -4.6712 19 6 4.7502 -0.5034 -3.5622 20 6 3.5778 -0.9238 -2.9100 21 7 3.1276 -0.2905 -1.8214 22 1 -0.3632 0.5966 0.8367 23 1 -0.3633 0.4265 -0.9350 24 1 -0.3633 -1.0229 0.0982 25 1 2.1377 -1.8706 3.4592 26 1 0.4238 -2.1325 -1.2368 27 1 2.7974 -3.5387 -4.9703 28 1 4.8342 -2.7633 -6.0562 29 1 6.0805 -0.8389 -5.1694 30 1 5.3079 0.3408 -3.1843 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259978411.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:41 Heat of formation + Delta-G solvation = 36.422613 kcal Electronic energy + Delta-G solvation = -14897.836008 eV Core-core repulsion = 12463.896118 eV Total energy + Delta-G solvation = -2433.939889 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.38361 -38.78511 -36.52069 -35.52314 -33.67980 -31.53694 -30.68157 -26.95479 -25.99184 -25.34718 -23.19023 -22.18556 -19.86125 -19.17234 -18.98602 -17.52849 -16.20361 -16.07414 -15.87316 -15.37061 -15.23606 -14.77419 -14.59176 -13.97628 -13.29253 -13.20121 -12.81929 -12.73319 -12.64999 -12.56805 -12.43614 -12.31674 -11.90403 -11.40954 -11.06693 -10.51223 -10.05175 -9.81888 -9.53226 -8.76589 -6.41724 -0.74011 -0.38736 0.94682 1.50896 1.55656 1.74901 1.88809 2.49647 2.99278 3.04095 3.10754 3.20239 3.35017 3.85503 3.91255 4.16136 4.19909 4.30745 4.44287 4.63597 4.77942 4.84355 4.97005 4.98289 5.18656 5.22310 5.31741 5.37392 5.54757 5.79784 5.87994 5.98735 6.30788 6.48345 6.81172 7.34233 8.59187 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.043800 B = 0.007065 C = 0.006738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.113961 B = 3962.442321 C = 4154.333096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.059 3.941 3 H 0.043 0.957 4 C -0.592 4.592 5 H 0.008 0.992 6 C -0.010 4.010 7 N -0.931 5.931 8 Si 1.082 2.918 9 H -0.279 1.279 10 H -0.231 1.231 11 H -0.281 1.281 12 C 0.135 3.865 13 C 0.073 3.927 14 N -0.441 5.441 15 C 0.033 3.967 16 C -0.094 4.094 17 C -0.091 4.091 18 C -0.080 4.080 19 C -0.110 4.110 20 C 0.056 3.944 21 N -0.467 5.467 22 H 0.060 0.940 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.253 0.747 26 H 0.185 0.815 27 H 0.152 0.848 28 H 0.180 0.820 29 H 0.177 0.823 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.522 0.745 -18.075 18.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.038 3.962 3 H 0.061 0.939 4 C -0.630 4.630 5 H 0.027 0.973 6 C -0.209 4.209 7 N -0.566 5.566 8 Si 0.903 3.097 9 H -0.206 1.206 10 H -0.154 1.154 11 H -0.207 1.207 12 C -0.019 4.019 13 C -0.102 4.102 14 N -0.155 5.155 15 C -0.092 4.092 16 C -0.113 4.113 17 C -0.111 4.111 18 C -0.100 4.100 19 C -0.130 4.130 20 C -0.069 4.069 21 N -0.182 5.182 22 H 0.079 0.921 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.201 0.799 27 H 0.170 0.830 28 H 0.197 0.803 29 H 0.194 0.806 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.301 1.864 -17.159 17.412 hybrid contribution 0.522 -1.701 -0.202 1.791 sum 2.822 0.163 -17.361 17.590 Atomic orbital electron populations 1.22170 0.94836 1.01928 1.01107 1.18143 0.94387 0.95664 0.87956 0.93883 1.21788 1.40085 1.08808 0.92329 0.97332 1.27209 0.93401 1.08989 0.91254 1.70961 1.46011 1.07508 1.32103 0.83654 0.77863 0.70450 0.77766 1.20564 1.15423 1.20679 1.22958 0.90023 0.93786 0.95090 1.24071 1.01009 0.92589 0.92528 1.68680 1.12204 1.27020 1.07587 1.20172 0.93738 0.96415 0.98858 1.21083 0.97662 1.00062 0.92503 1.21477 0.93175 0.95953 1.00480 1.21480 1.00481 0.94084 0.93932 1.21067 0.93805 1.01587 0.96526 1.20289 0.98122 0.94689 0.93782 1.68578 1.12362 1.29823 1.07406 0.92111 0.92398 0.92420 0.93857 0.79866 0.83019 0.80293 0.80556 0.84092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 7.92 71.98 0.57 -5.10 16 2 C 0.06 2.80 2.17 -12.28 -0.03 2.78 16 3 H 0.04 2.07 6.69 -2.39 -0.02 2.05 16 4 C -0.59 -33.87 8.81 25.60 0.23 -33.64 16 5 H 0.01 0.54 7.99 -2.91 -0.02 0.52 16 6 C -0.01 -0.56 5.35 84.66 0.45 -0.11 16 7 N -0.93 -58.01 13.70 21.45 0.29 -57.72 16 8 Si 1.08 48.88 26.36 68.60 1.81 50.69 16 9 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 10 H -0.23 -8.95 5.46 99.48 0.54 -8.41 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.14 6.18 5.74 42.98 0.25 6.43 16 13 C 0.07 2.99 10.31 85.11 0.88 3.87 16 14 N -0.44 -17.27 10.46 -188.08 -1.97 -19.24 16 15 C 0.03 1.18 6.59 40.30 0.27 1.44 16 16 C -0.09 -2.40 9.99 22.34 0.22 -2.18 16 17 C -0.09 -1.64 9.95 22.05 0.22 -1.42 16 18 C -0.08 -1.53 9.95 22.04 0.22 -1.31 16 19 C -0.11 -3.17 9.98 22.34 0.22 -2.95 16 20 C 0.06 2.14 6.59 40.30 0.27 2.41 16 21 N -0.47 -21.11 10.38 -176.24 -1.83 -22.94 16 22 H 0.06 2.38 5.08 -2.39 -0.01 2.37 16 23 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.06 2.21 6.79 -2.39 -0.02 2.20 16 25 H 0.25 16.07 8.72 -92.71 -0.81 15.26 16 26 H 0.18 6.81 6.42 -2.91 -0.02 6.79 16 27 H 0.15 3.23 8.06 -2.91 -0.02 3.21 16 28 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 29 H 0.18 1.77 8.06 -2.91 -0.02 1.74 16 30 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -72.53 255.96 3.02 -69.52 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.95 Total: 9.47 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.76 Total: -29.78 kcal Atomic # 7 Polarization: -96.40 SS G_CDS: -3.50 Total: -99.90 kcal Atomic # 14 Polarization: 48.88 SS G_CDS: 1.81 Total: 50.69 kcal Total: -72.53 3.02 -69.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978411.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.942 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds