Wall clock time and date at job start Mon Mar 30 2020 03:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46837 * 2 1 4 4 F 1.39887 * 109.47283 * 239.99990 * 2 1 3 5 5 C 1.53004 * 109.46971 * 119.99491 * 2 1 3 6 6 N 1.46501 * 109.46845 * 60.00490 * 5 2 1 7 7 N 1.29015 * 126.43541 * 269.96873 * 6 5 2 8 8 N 1.28744 * 108.80363 * 180.02562 * 7 6 5 9 9 N 1.28839 * 109.39767 * 359.77005 * 8 7 6 10 10 C 1.31069 * 107.98928 * 0.37536 * 9 8 7 11 11 C 1.50700 * 126.65585 * 179.89960 * 10 9 8 12 12 C 1.50702 * 109.46869 * 269.68308 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72213 * 12 11 10 15 15 N 1.31514 * 119.99985 * 180.27663 * 14 12 11 16 16 Si 1.86800 * 119.99777 * 0.28166 * 14 12 11 17 17 H 1.48498 * 109.47109 * 89.99834 * 16 14 12 18 18 H 1.48507 * 109.46754 * 209.99574 * 16 14 12 19 19 H 1.48498 * 109.47278 * 329.99405 * 16 14 12 20 20 H 1.08995 * 109.47218 * 300.00031 * 1 2 3 21 21 H 1.08997 * 109.47125 * 60.00594 * 1 2 3 22 22 H 1.09000 * 109.46538 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47138 * 180.02562 * 3 2 1 24 24 H 1.09000 * 109.47251 * 299.99781 * 3 2 1 25 25 H 1.09003 * 109.47511 * 59.99381 * 3 2 1 26 26 H 1.09000 * 109.47255 * 299.99927 * 5 2 1 27 27 H 1.08997 * 109.46797 * 180.02562 * 5 2 1 28 28 H 1.09004 * 109.47210 * 149.68602 * 11 10 9 29 29 H 1.08994 * 109.47551 * 29.68254 * 11 10 9 30 30 H 0.96996 * 119.99730 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9964 -0.6594 -1.1422 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -2.1024 1.2493 7 7 0.4491 -2.5253 1.7687 8 7 0.3587 -3.7947 1.5741 9 7 1.3945 -4.2030 0.9257 10 6 2.1695 -3.1687 0.7081 11 6 3.4923 -3.1716 -0.0139 12 6 4.6040 -3.4084 0.9755 13 1 4.3756 -3.5437 2.0224 14 6 5.9125 -3.4586 0.5434 15 7 6.8822 -3.6707 1.4060 16 14 6.3076 -3.2253 -1.2674 17 1 6.5326 -1.7836 -1.5431 18 1 7.5327 -3.9918 -1.6094 19 1 5.1717 -3.7151 -2.0890 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3632 -1.0277 0.0005 23 1 3.1300 1.4426 -0.0005 24 1 1.6767 1.9564 -0.8900 25 1 1.6766 1.9565 0.8899 26 1 1.6767 -0.2073 2.1393 27 1 3.1300 -0.7207 1.2495 28 1 3.6409 -2.2094 -0.5040 29 1 3.4964 -3.9646 -0.7616 30 1 7.8026 -3.7056 1.1021 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260010651.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:51 Heat of formation + Delta-G solvation = 32.656747 kcal Electronic energy + Delta-G solvation = -16416.186567 eV Core-core repulsion = 13583.606904 eV Total energy + Delta-G solvation = -2832.579663 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 228.108 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -48.86379 -45.09955 -37.61555 -35.83021 -34.62779 -33.94528 -30.83155 -28.80001 -28.40140 -25.64254 -24.30370 -22.86383 -21.47774 -19.27739 -18.68016 -18.08828 -16.93323 -16.67764 -16.38103 -15.95506 -15.59235 -15.07060 -14.49801 -14.03373 -13.92175 -13.67096 -13.39280 -13.29738 -13.00885 -12.95415 -12.89729 -12.71671 -12.48056 -12.16402 -12.04540 -11.91330 -11.77187 -11.51601 -10.84612 -10.73629 -8.36599 -6.47497 0.27829 1.06612 1.24733 1.39116 1.43389 1.53826 2.32245 2.95475 3.10109 3.24481 3.29299 3.51579 3.57642 3.77073 4.04680 4.26098 4.44827 4.59518 4.64364 4.72774 4.77393 4.80147 4.97494 5.04782 5.08371 5.20094 5.27141 5.39937 6.08382 6.55049 7.16783 7.61490 8.79019 Molecular weight = 228.11amu Principal moments of inertia in cm(-1) A = 0.024902 B = 0.010894 C = 0.008698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.138971 B = 2569.576927 C = 3218.335978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 C -0.163 4.163 4 F -0.221 7.221 5 C 0.078 3.922 6 N -0.301 5.301 7 N -0.102 5.102 8 N -0.111 5.111 9 N -0.349 5.349 10 C 0.236 3.764 11 C 0.068 3.932 12 C -0.532 4.532 13 H 0.027 0.973 14 C 0.028 3.972 15 N -0.935 5.935 16 Si 0.942 3.058 17 H -0.250 1.250 18 H -0.281 1.281 19 H -0.248 1.248 20 H 0.106 0.894 21 H 0.087 0.913 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.110 0.890 26 H 0.158 0.842 27 H 0.125 0.875 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.443 14.524 -4.943 17.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.077 3.923 3 C -0.220 4.220 4 F -0.202 7.202 5 C -0.042 4.042 6 N -0.102 5.102 7 N -0.088 5.088 8 N -0.105 5.105 9 N -0.199 5.199 10 C -0.041 4.041 11 C 0.027 3.973 12 C -0.571 4.571 13 H 0.046 0.954 14 C -0.172 4.172 15 N -0.573 5.573 16 Si 0.763 3.237 17 H -0.174 1.174 18 H -0.207 1.207 19 H -0.171 1.171 20 H 0.125 0.875 21 H 0.106 0.894 22 H 0.053 0.947 23 H 0.094 0.906 24 H 0.107 0.893 25 H 0.128 0.872 26 H 0.176 0.824 27 H 0.143 0.857 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.434 13.845 -4.419 17.327 hybrid contribution 1.262 -0.083 -0.592 1.396 sum -8.172 13.762 -5.011 16.772 Atomic orbital electron populations 1.22407 0.91850 1.02585 1.05920 1.21651 0.96397 0.94169 0.80035 1.22338 1.03199 0.90197 1.06288 1.92875 1.90421 1.83435 1.53419 1.23437 1.03226 0.74604 1.02973 1.48454 1.13586 1.11737 1.36429 1.78530 1.04404 1.08130 1.17732 1.78392 1.16659 1.01915 1.13502 1.74926 1.01830 1.25667 1.17459 1.26449 0.98476 0.82421 0.96769 1.18347 0.83207 1.00766 0.94936 1.20705 0.90626 1.52222 0.93576 0.95428 1.25770 0.95327 0.93125 1.02945 1.70009 1.00826 1.49291 1.37185 0.85787 0.78781 0.80081 0.79029 1.17380 1.20689 1.17107 0.87531 0.89372 0.94654 0.90561 0.89265 0.87180 0.82377 0.85654 0.91163 0.92459 0.91748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 8.65 71.98 0.62 -2.73 16 2 C 0.10 2.10 1.46 -10.79 -0.02 2.09 16 3 C -0.16 -2.14 8.93 71.98 0.64 -1.50 16 4 F -0.22 -6.58 15.23 44.97 0.68 -5.90 16 5 C 0.08 2.02 5.27 86.38 0.45 2.47 16 6 N -0.30 -11.11 2.82 -338.26 -0.95 -12.06 16 7 N -0.10 -3.95 12.15 37.02 0.45 -3.50 16 8 N -0.11 -4.98 13.43 37.01 0.50 -4.49 16 9 N -0.35 -16.85 12.36 -50.46 -0.62 -17.48 16 10 C 0.24 10.56 7.13 138.14 0.98 11.55 16 11 C 0.07 3.11 4.18 29.10 0.12 3.23 16 12 C -0.53 -29.11 9.65 25.60 0.25 -28.86 16 13 H 0.03 1.72 7.98 -2.91 -0.02 1.70 16 14 C 0.03 1.54 5.47 84.66 0.46 2.00 16 15 N -0.93 -55.02 13.96 21.45 0.30 -54.72 16 16 Si 0.94 40.18 27.47 68.60 1.88 42.06 16 17 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 18 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.25 -10.00 6.54 99.48 0.65 -9.35 16 20 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 21 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.03 0.94 6.80 -2.39 -0.02 0.93 16 23 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 25 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.16 2.84 8.14 -2.39 -0.02 2.82 16 27 H 0.13 3.44 7.75 -2.39 -0.02 3.42 16 28 H 0.07 2.90 5.89 -2.38 -0.01 2.88 16 29 H 0.06 2.66 7.19 -2.39 -0.02 2.65 16 30 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -70.08 261.68 6.85 -63.23 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.09 Total: 4.59 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 3.52 Total: -11.75 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -0.33 Total: -92.24 kcal Atomic # 9 Polarization: -6.58 SS G_CDS: 0.68 Total: -5.90 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 1.88 Total: 42.06 kcal Total: -70.08 6.85 -63.23 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260010651.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.887 kcal (2) G-P(sol) polarization free energy of solvation -70.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds