Wall clock time and date at job start Mon Mar 30 2020 03:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47071 * 2 1 4 4 C 1.34230 * 116.99847 * 180.02562 * 3 2 1 5 5 O 1.20827 * 120.00067 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99743 * 179.97438 * 4 3 2 7 7 H 1.08998 * 109.52253 * 299.86731 * 6 4 3 8 8 C 1.53093 * 109.52376 * 59.99239 * 6 4 3 9 9 O 1.42904 * 109.42351 * 177.50763 * 8 6 4 10 10 C 1.42902 * 114.09961 * 298.86177 * 9 8 6 11 11 C 1.53094 * 109.42545 * 61.14161 * 10 9 8 12 12 C 1.53176 * 109.52229 * 179.67895 * 6 4 3 13 13 H 1.09003 * 109.54279 * 63.24270 * 12 6 4 14 14 C 1.50696 * 109.54476 * 302.98215 * 12 6 4 15 15 H 1.07999 * 119.99968 * 359.97438 * 14 12 6 16 16 C 1.37879 * 120.00424 * 180.02562 * 14 12 6 17 17 N 1.31509 * 119.99486 * 359.97438 * 16 14 12 18 18 Si 1.86790 * 120.00245 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47688 * 89.99706 * 18 16 14 20 20 H 1.48502 * 109.47136 * 209.99418 * 18 16 14 21 21 H 1.48506 * 109.47363 * 329.99360 * 18 16 14 22 22 H 1.09001 * 109.47075 * 60.00188 * 1 2 3 23 23 H 1.08994 * 109.47003 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46997 * 300.00712 * 1 2 3 25 25 H 1.09003 * 109.47436 * 239.99714 * 2 1 3 26 26 H 1.09001 * 109.47109 * 119.99256 * 2 1 3 27 27 H 1.09002 * 109.48198 * 297.49871 * 8 6 4 28 28 H 1.08999 * 109.48029 * 57.52485 * 8 6 4 29 29 H 1.09000 * 109.47314 * 301.15801 * 10 9 8 30 30 H 1.09001 * 109.49082 * 181.13246 * 10 9 8 31 31 H 1.08997 * 109.52488 * 182.49772 * 11 10 9 32 32 H 1.08995 * 109.52127 * 62.29758 * 11 10 9 33 33 H 0.97003 * 120.00415 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9375 -0.0012 7 1 3.5869 3.4693 -0.8921 8 6 3.4499 3.6864 1.2483 9 8 4.0435 4.9861 1.2752 10 6 5.4714 4.9744 1.3305 11 6 6.0234 4.2772 0.0843 12 6 5.4504 2.8587 0.0064 13 1 5.7952 2.3759 -0.9080 14 6 5.9084 2.0636 1.2018 15 1 5.1823 1.6549 1.8889 16 6 7.2545 1.8588 1.4191 17 7 8.1387 2.3569 0.5827 18 14 7.8221 0.8739 2.9012 19 1 7.9163 -0.5622 2.5349 20 1 9.1549 1.3614 3.3386 21 1 6.8467 1.0393 4.0087 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5137 0.8901 27 1 2.3644 3.7829 1.2268 28 1 3.7481 3.1322 2.1382 29 1 5.7961 4.4370 2.2215 30 1 5.8423 5.9986 1.3682 31 1 7.1105 4.2280 0.1459 32 1 5.7329 4.8367 -0.8049 33 1 9.0857 2.2126 0.7352 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260032975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:48 Heat of formation + Delta-G solvation = -142.645319 kcal Electronic energy + Delta-G solvation = -16880.009492 eV Core-core repulsion = 14098.702964 eV Total energy + Delta-G solvation = -2781.306529 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.01688 -38.18918 -35.94921 -33.72713 -31.91595 -31.13943 -30.07803 -25.71515 -24.09053 -23.33992 -22.55239 -20.58159 -18.87028 -16.95983 -16.30147 -16.03752 -15.62592 -15.05520 -14.83942 -14.47276 -13.76449 -13.40099 -13.05468 -12.74584 -12.60686 -12.15695 -11.84568 -11.59415 -11.33032 -11.20824 -10.85861 -10.63966 -10.45542 -10.15903 -10.03876 -9.74581 -9.55281 -9.31128 -9.05470 -8.55035 -8.14924 -5.97521 -3.98732 3.03902 3.25996 3.33285 3.39415 3.42248 4.46816 4.67827 5.08520 5.14088 5.33080 5.37212 5.47691 5.68689 5.71425 5.89694 5.94193 6.02572 6.13173 6.21173 6.33295 6.46013 6.51374 6.68841 7.03526 7.07497 7.25640 7.60644 7.67522 7.96559 8.10876 8.36798 8.60511 8.96084 9.62076 11.09800 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.010654 C = 0.008366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.084138 B = 2627.443497 C = 3346.116891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.372 6.372 4 C 0.460 3.540 5 O -0.469 6.469 6 C -0.104 4.104 7 H 0.089 0.911 8 C 0.086 3.914 9 O -0.393 6.393 10 C 0.068 3.932 11 C -0.143 4.143 12 C 0.059 3.941 13 H 0.038 0.962 14 C -0.486 4.486 15 H 0.052 0.948 16 C 0.061 3.939 17 N -0.894 5.894 18 Si 0.889 3.111 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.276 1.276 22 H 0.063 0.937 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.028 0.972 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.668 0.302 -0.358 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.292 6.292 4 C 0.301 3.699 5 O -0.352 6.352 6 C -0.124 4.124 7 H 0.107 0.893 8 C 0.009 3.991 9 O -0.312 6.312 10 C -0.008 4.008 11 C -0.181 4.181 12 C 0.041 3.959 13 H 0.056 0.944 14 C -0.524 4.524 15 H 0.070 0.930 16 C -0.139 4.139 17 N -0.534 5.534 18 Si 0.717 3.283 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.201 1.201 22 H 0.082 0.918 23 H 0.092 0.908 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.125 0.875 32 H 0.047 0.953 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.351 0.141 -0.378 10.359 hybrid contribution 0.614 -1.135 0.686 1.462 sum -9.737 -0.994 0.308 9.792 Atomic orbital electron populations 1.21773 0.93335 1.02351 1.03196 1.22848 0.94714 0.81680 1.02217 1.86534 1.26264 1.31122 1.85232 1.23857 0.79399 0.93426 0.73204 1.90704 1.59619 1.42567 1.42296 1.21928 1.01117 0.88577 1.00752 0.89307 1.22249 0.96401 0.84458 0.96007 1.87761 1.21496 1.26972 1.94985 1.22580 0.79177 0.99248 0.99758 1.22174 1.04895 0.96259 0.94809 1.18699 0.84563 0.93532 0.99139 0.94421 1.20916 0.91600 1.31565 1.08303 0.92968 1.24839 0.96787 0.95767 0.96509 1.69836 1.01300 1.45678 1.36623 0.86638 0.77851 0.80670 0.83114 1.20781 1.21339 1.20114 0.91757 0.90830 0.91691 0.91795 0.91667 0.89924 0.92330 0.92230 0.91119 0.87481 0.95312 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.29 37.16 0.38 -1.18 16 2 C 0.06 0.87 6.19 37.16 0.23 1.10 16 3 O -0.37 -6.60 10.15 -39.26 -0.40 -7.00 16 4 C 0.46 9.72 6.75 36.01 0.24 9.97 16 5 O -0.47 -11.53 14.24 -18.75 -0.27 -11.80 16 6 C -0.10 -2.19 2.60 -91.63 -0.24 -2.43 16 7 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 8 C 0.09 1.68 5.82 37.21 0.22 1.90 16 9 O -0.39 -8.01 10.77 -35.23 -0.38 -8.39 16 10 C 0.07 1.43 6.62 37.21 0.25 1.67 16 11 C -0.14 -3.29 5.46 -26.59 -0.15 -3.43 16 12 C 0.06 1.46 1.85 -91.59 -0.17 1.29 16 13 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 14 C -0.49 -13.10 5.15 -34.44 -0.18 -13.28 16 15 H 0.05 1.44 6.25 -52.49 -0.33 1.11 16 16 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 17 N -0.89 -25.30 11.34 55.43 0.63 -24.67 16 18 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.92 8.13 -51.93 -0.42 0.50 16 26 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 27 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 28 H 0.06 1.22 6.86 -51.93 -0.36 0.86 16 29 H 0.06 1.33 7.38 -51.93 -0.38 0.95 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.11 2.71 6.05 -51.93 -0.31 2.40 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.26 7.05 8.31 -40.82 -0.34 6.72 16 LS Contribution 269.63 15.07 4.06 4.06 Total: -1.00 -29.96 269.63 -5.62 -35.58 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -4.74 Total: -1.75 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 0.49 Total: -2.80 kcal Atomic # 7 Polarization: -25.30 SS G_CDS: 0.63 Total: -24.67 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -1.04 Total: -27.19 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.96 -5.62 -35.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.066 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds