Wall clock time and date at job start Mon Mar 30 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45196 * 109.46914 * 2 1 4 4 C 1.34232 * 116.99812 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99877 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99927 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.52084 * 59.87133 * 6 4 3 8 8 C 1.53091 * 109.52027 * 299.68360 * 6 4 3 9 9 O 1.42903 * 109.41515 * 182.48679 * 8 6 4 10 10 C 1.42901 * 114.09727 * 61.15520 * 9 8 6 11 11 C 1.53092 * 109.41834 * 298.84593 * 10 9 8 12 12 C 1.53174 * 109.16411 * 57.60402 * 11 10 9 13 13 H 1.08998 * 109.62288 * 183.11044 * 12 11 10 14 14 C 1.50706 * 109.54166 * 62.88947 * 12 11 10 15 15 H 1.07993 * 119.99997 * 275.30546 * 14 12 11 16 16 C 1.37874 * 119.99985 * 95.30424 * 14 12 11 17 17 N 1.31514 * 120.00257 * 184.87977 * 16 14 12 18 18 Si 1.86804 * 119.99875 * 4.87976 * 16 14 12 19 19 H 1.48499 * 109.47225 * 84.80329 * 18 16 14 20 20 H 1.48502 * 109.46946 * 204.79754 * 18 16 14 21 21 H 1.48500 * 109.47195 * 324.79923 * 18 16 14 22 22 H 1.08997 * 109.47265 * 300.00248 * 1 2 3 23 23 H 1.09002 * 109.46505 * 60.00600 * 1 2 3 24 24 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47154 * 239.99208 * 2 1 3 26 26 H 1.09002 * 109.46505 * 119.99400 * 2 1 3 27 27 H 1.08997 * 109.48364 * 302.46512 * 8 6 4 28 28 H 1.08997 * 109.48226 * 62.49251 * 8 6 4 29 29 H 1.09005 * 109.47962 * 58.82862 * 10 9 8 30 30 H 1.09002 * 109.47977 * 178.85116 * 10 9 8 31 31 H 1.09007 * 109.52003 * 297.70427 * 11 10 9 32 32 H 1.08995 * 109.52866 * 177.51781 * 11 10 9 33 33 H 0.96998 * 120.00314 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5830 3.4716 0.8881 8 6 3.4566 3.6825 -1.2543 9 8 4.0502 4.9821 -1.2818 10 6 5.4784 4.9702 -1.3296 11 6 6.0238 4.2768 -0.0785 12 6 5.4505 2.8587 0.0008 13 1 5.7902 2.3772 0.9178 14 6 5.9148 2.0599 -1.1898 15 1 5.3750 2.1189 -2.1233 16 6 7.0286 1.2538 -1.0873 17 7 7.4904 0.6319 -2.1500 18 14 7.8820 1.0452 0.5613 19 1 7.2060 -0.0258 1.3366 20 1 9.3027 0.6743 0.3398 21 1 7.8156 2.3212 1.3181 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.7596 3.1257 -2.1409 28 1 2.3710 3.7789 -1.2389 29 1 5.8079 4.4301 -2.2173 30 1 5.8493 5.9944 -1.3687 31 1 5.7286 4.8391 0.8075 32 1 7.1113 4.2275 -0.1340 33 1 8.2738 0.0645 -2.0778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260032981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:50 Heat of formation + Delta-G solvation = -140.183404 kcal Electronic energy + Delta-G solvation = -16928.299396 eV Core-core repulsion = 14147.099624 eV Total energy + Delta-G solvation = -2781.199772 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.02376 -38.33455 -35.92651 -33.69896 -31.88727 -31.37618 -30.46147 -26.05636 -24.16292 -23.18656 -22.61881 -20.64910 -18.81323 -16.96845 -16.56267 -16.08169 -15.99531 -15.18485 -14.86313 -14.29457 -13.73103 -13.48977 -13.10283 -12.70606 -12.67778 -12.60231 -12.03339 -11.84701 -11.47360 -11.28159 -10.81037 -10.76198 -10.37804 -10.10104 -10.04511 -9.77752 -9.70666 -9.53717 -9.07395 -8.58302 -8.34855 -6.00629 -3.97602 3.07808 3.26944 3.36038 3.41662 3.45332 4.50532 4.52813 5.12519 5.16110 5.25633 5.40648 5.50736 5.58003 5.62524 5.85781 5.92822 5.95033 5.97191 6.03542 6.12410 6.19521 6.41980 6.45584 6.75227 6.81468 6.98297 7.07440 7.17731 7.75119 7.84158 8.48637 8.65297 8.97155 9.64167 11.12756 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.012047 C = 0.008898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.295525 B = 2323.581549 C = 3146.040325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.060 3.940 3 O -0.373 6.373 4 C 0.459 3.541 5 O -0.459 6.459 6 C -0.098 4.098 7 H 0.089 0.911 8 C 0.082 3.918 9 O -0.389 6.389 10 C 0.067 3.933 11 C -0.143 4.143 12 C 0.022 3.978 13 H 0.041 0.959 14 C -0.496 4.496 15 H 0.072 0.928 16 C 0.084 3.916 17 N -0.901 5.901 18 Si 0.876 3.124 19 H -0.275 1.275 20 H -0.293 1.293 21 H -0.269 1.269 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.076 0.924 31 H 0.041 0.959 32 H 0.068 0.932 33 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 3.474 4.462 11.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.014 4.014 3 O -0.293 6.293 4 C 0.299 3.701 5 O -0.341 6.341 6 C -0.117 4.117 7 H 0.107 0.893 8 C 0.005 3.995 9 O -0.308 6.308 10 C -0.009 4.009 11 C -0.181 4.181 12 C 0.003 3.997 13 H 0.059 0.941 14 C -0.534 4.534 15 H 0.090 0.910 16 C -0.118 4.118 17 N -0.539 5.539 18 Si 0.704 3.296 19 H -0.201 1.201 20 H -0.220 1.220 21 H -0.194 1.194 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.611 3.170 4.388 11.031 hybrid contribution 0.769 -0.795 0.924 1.442 sum -8.842 2.375 5.312 10.585 Atomic orbital electron populations 1.21774 0.93371 1.02350 1.03122 1.22844 0.94627 0.81594 1.02325 1.86503 1.26162 1.31208 1.85382 1.23614 0.79541 0.93191 0.73772 1.90729 1.59511 1.42326 1.41507 1.21751 1.00041 0.89155 1.00780 0.89343 1.22331 0.96798 0.84151 0.96209 1.87787 1.20794 1.27256 1.94969 1.22523 0.79855 0.99557 0.99002 1.22343 1.01153 0.97895 0.96746 1.19172 0.87638 0.93558 0.99369 0.94075 1.20657 1.11797 1.24745 0.96161 0.91011 1.24869 0.96535 0.94610 0.95767 1.69885 1.24213 1.31122 1.28671 0.86899 0.78157 0.78990 0.85562 1.20077 1.21978 1.19360 0.91852 0.91670 0.90830 0.91462 0.91893 0.91772 0.89483 0.91551 0.90571 0.93999 0.91301 0.92849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.23 16 2 C 0.06 0.91 6.19 37.16 0.23 1.14 16 3 O -0.37 -6.67 10.15 -39.26 -0.40 -7.07 16 4 C 0.46 9.71 6.97 36.01 0.25 9.96 16 5 O -0.46 -11.52 14.41 -18.75 -0.27 -11.79 16 6 C -0.10 -1.97 2.61 -91.63 -0.24 -2.21 16 7 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 8 C 0.08 1.55 5.83 37.20 0.22 1.77 16 9 O -0.39 -7.45 10.77 -35.23 -0.38 -7.83 16 10 C 0.07 1.27 6.62 37.21 0.25 1.52 16 11 C -0.14 -2.91 5.62 -26.59 -0.15 -3.06 16 12 C 0.02 0.50 1.52 -91.59 -0.14 0.36 16 13 H 0.04 1.00 5.30 -51.93 -0.28 0.73 16 14 C -0.50 -13.48 5.46 -34.44 -0.19 -13.67 16 15 H 0.07 2.12 6.48 -52.49 -0.34 1.78 16 16 C 0.08 2.42 5.47 -17.82 -0.10 2.33 16 17 N -0.90 -27.69 13.96 55.43 0.77 -26.92 16 18 Si 0.88 22.35 26.99 -169.99 -4.59 17.76 16 19 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 21 H -0.27 -6.43 6.82 56.52 0.39 -6.04 16 22 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 26 H 0.06 0.94 8.13 -51.93 -0.42 0.52 16 27 H 0.06 1.34 6.51 -51.93 -0.34 1.00 16 28 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 29 H 0.07 1.39 7.36 -51.93 -0.38 1.00 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 269.25 15.07 4.06 4.06 Total: -1.00 -31.74 269.25 -5.01 -36.75 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -4.71 Total: -1.88 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 0.51 Total: -3.09 kcal Atomic # 7 Polarization: -27.69 SS G_CDS: 0.77 Total: -26.92 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.05 Total: -26.68 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.59 Total: 17.76 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.74 -5.01 -36.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.435 kcal (2) G-P(sol) polarization free energy of solvation -31.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds