Wall clock time and date at job start Mon Mar 30 2020 03:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45196 * 109.46914 * 2 1 4 4 C 1.34232 * 116.99812 * 179.97438 * 3 2 1 5 5 O 1.20822 * 119.99877 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99927 * 179.97438 * 4 3 2 7 7 H 1.09001 * 109.52084 * 59.87133 * 6 4 3 8 8 C 1.53091 * 109.52027 * 299.68360 * 6 4 3 9 9 O 1.42903 * 109.41515 * 182.48679 * 8 6 4 10 10 C 1.42901 * 114.09727 * 61.15520 * 9 8 6 11 11 C 1.53092 * 109.41834 * 298.84593 * 10 9 8 12 12 C 1.53174 * 109.16411 * 57.60402 * 11 10 9 13 13 H 1.08998 * 109.62288 * 183.11044 * 12 11 10 14 14 C 1.50706 * 109.54166 * 62.88947 * 12 11 10 15 15 H 1.07993 * 119.99997 * 275.30546 * 14 12 11 16 16 C 1.37874 * 119.99985 * 95.30424 * 14 12 11 17 17 N 1.31514 * 120.00257 * 184.87977 * 16 14 12 18 18 Si 1.86804 * 119.99875 * 4.87976 * 16 14 12 19 19 H 1.48499 * 109.47225 * 84.80329 * 18 16 14 20 20 H 1.48502 * 109.46946 * 204.79754 * 18 16 14 21 21 H 1.48500 * 109.47195 * 324.79923 * 18 16 14 22 22 H 1.08997 * 109.47265 * 300.00248 * 1 2 3 23 23 H 1.09002 * 109.46505 * 60.00600 * 1 2 3 24 24 H 1.09002 * 109.47099 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47154 * 239.99208 * 2 1 3 26 26 H 1.09002 * 109.46505 * 119.99400 * 2 1 3 27 27 H 1.08997 * 109.48364 * 302.46512 * 8 6 4 28 28 H 1.08997 * 109.48226 * 62.49251 * 8 6 4 29 29 H 1.09005 * 109.47962 * 58.82862 * 10 9 8 30 30 H 1.09002 * 109.47977 * 178.85116 * 10 9 8 31 31 H 1.09007 * 109.52003 * 297.70427 * 11 10 9 32 32 H 1.08995 * 109.52866 * 177.51781 * 11 10 9 33 33 H 0.96998 * 120.00314 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5830 3.4716 0.8881 8 6 3.4566 3.6825 -1.2543 9 8 4.0502 4.9821 -1.2818 10 6 5.4784 4.9702 -1.3296 11 6 6.0238 4.2768 -0.0785 12 6 5.4505 2.8587 0.0008 13 1 5.7902 2.3772 0.9178 14 6 5.9148 2.0599 -1.1898 15 1 5.3750 2.1189 -2.1233 16 6 7.0286 1.2538 -1.0873 17 7 7.4904 0.6319 -2.1500 18 14 7.8820 1.0452 0.5613 19 1 7.2060 -0.0258 1.3366 20 1 9.3027 0.6743 0.3398 21 1 7.8156 2.3212 1.3181 22 1 -0.3633 0.5138 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8934 -0.5139 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.7596 3.1257 -2.1409 28 1 2.3710 3.7789 -1.2389 29 1 5.8079 4.4301 -2.2173 30 1 5.8493 5.9944 -1.3687 31 1 5.7286 4.8391 0.8075 32 1 7.1113 4.2275 -0.1340 33 1 8.2738 0.0645 -2.0778 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260032981.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:34:50 Heat of formation + Delta-G solvation = -161.665682 kcal Electronic energy + Delta-G solvation = -16929.230937 eV Core-core repulsion = 14147.099624 eV Total energy + Delta-G solvation = -2782.131313 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.66142 -39.90720 -37.52860 -35.53966 -33.74340 -32.83428 -31.88236 -27.98429 -25.68117 -24.95445 -23.88299 -22.21703 -20.65321 -18.67742 -18.42259 -17.63287 -17.60233 -16.66320 -16.41551 -16.23818 -15.31498 -14.99232 -14.86363 -14.43639 -14.27465 -13.91538 -13.58500 -13.36131 -12.86064 -12.76334 -12.46209 -12.37193 -12.22739 -11.83990 -11.68552 -11.55039 -11.43729 -11.27397 -10.82518 -10.64660 -10.18354 -8.21775 -6.19090 1.30206 1.36829 1.39899 1.41844 1.81610 2.38954 3.02898 3.16949 3.82277 3.97328 4.04069 4.07080 4.18306 4.25605 4.37817 4.39491 4.48371 4.64334 4.84092 4.84776 4.94853 4.96049 5.11458 5.17865 5.20239 5.23538 5.41784 5.59245 5.72539 6.27740 6.28785 6.78349 7.01867 7.44084 8.95414 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.022037 B = 0.012047 C = 0.008898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.295525 B = 2323.581549 C = 3146.040325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.050 3.950 3 O -0.363 6.363 4 C 0.462 3.538 5 O -0.509 6.509 6 C -0.099 4.099 7 H 0.125 0.875 8 C 0.088 3.912 9 O -0.383 6.383 10 C 0.069 3.931 11 C -0.141 4.141 12 C 0.013 3.987 13 H 0.032 0.968 14 C -0.473 4.473 15 H 0.035 0.965 16 C 0.021 3.979 17 N -0.953 5.953 18 Si 0.928 3.072 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.238 1.238 22 H 0.074 0.926 23 H 0.069 0.931 24 H 0.098 0.902 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.034 0.966 28 H 0.120 0.880 29 H 0.036 0.964 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.462 5.253 6.297 14.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 O -0.281 6.281 4 C 0.304 3.696 5 O -0.395 6.395 6 C -0.118 4.118 7 H 0.142 0.858 8 C 0.011 3.989 9 O -0.301 6.301 10 C -0.008 4.008 11 C -0.179 4.179 12 C -0.006 4.006 13 H 0.050 0.950 14 C -0.511 4.511 15 H 0.053 0.947 16 C -0.175 4.175 17 N -0.595 5.595 18 Si 0.754 3.246 19 H -0.214 1.214 20 H -0.219 1.219 21 H -0.161 1.161 22 H 0.093 0.907 23 H 0.088 0.912 24 H 0.117 0.883 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.052 0.948 28 H 0.138 0.862 29 H 0.054 0.946 30 H 0.132 0.868 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.230 4.993 6.239 13.782 hybrid contribution 1.112 -1.360 0.305 1.783 sum -10.117 3.633 6.544 12.585 Atomic orbital electron populations 1.21786 0.89546 1.04300 1.03925 1.23210 0.97542 0.79983 1.01647 1.86487 1.24132 1.33009 1.84504 1.23860 0.80298 0.93082 0.72326 1.90718 1.60867 1.43860 1.44095 1.21770 0.97948 0.89229 1.02884 0.85757 1.22319 0.98546 0.83750 0.94295 1.87808 1.20674 1.26892 1.94741 1.22552 0.79896 1.01209 0.97106 1.22277 1.00673 0.96152 0.98771 1.19217 0.90057 0.94653 0.96679 0.95008 1.20830 1.10189 1.23818 0.96242 0.94677 1.25629 0.97976 0.95109 0.98741 1.70030 1.25377 1.33222 1.30879 0.86038 0.76853 0.79760 0.81900 1.21386 1.21885 1.16107 0.90674 0.91176 0.88327 0.92971 0.91971 0.94783 0.86192 0.94601 0.86797 0.90643 0.91988 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 10.29 71.98 0.74 -1.87 16 2 C 0.05 1.45 6.19 71.98 0.45 1.89 16 3 O -0.36 -12.40 10.15 -51.44 -0.52 -12.92 16 4 C 0.46 19.23 6.97 71.24 0.50 19.73 16 5 O -0.51 -25.99 14.41 21.98 0.32 -25.67 16 6 C -0.10 -3.79 2.61 -11.45 -0.03 -3.82 16 7 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 8 C 0.09 3.16 5.83 72.01 0.42 3.58 16 9 O -0.38 -13.50 10.77 -148.98 -1.60 -15.10 16 10 C 0.07 2.44 6.62 72.01 0.48 2.92 16 11 C -0.14 -5.31 5.62 30.68 0.17 -5.14 16 12 C 0.01 0.58 1.52 -11.42 -0.02 0.57 16 13 H 0.03 1.49 5.30 -2.39 -0.01 1.48 16 14 C -0.47 -26.24 5.46 25.60 0.14 -26.10 16 15 H 0.04 2.17 6.48 -2.91 -0.02 2.15 16 16 C 0.02 1.27 5.47 84.65 0.46 1.73 16 17 N -0.95 -61.09 13.96 21.45 0.30 -60.79 16 18 Si 0.93 46.51 26.99 68.60 1.85 48.36 16 19 H -0.29 -14.87 7.11 99.48 0.71 -14.16 16 20 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 21 H -0.24 -10.60 6.82 99.48 0.68 -9.92 16 22 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 23 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 24 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.05 1.66 8.13 -2.39 -0.02 1.64 16 26 H 0.06 1.81 8.13 -2.39 -0.02 1.79 16 27 H 0.03 1.43 6.51 -2.39 -0.02 1.41 16 28 H 0.12 3.53 8.14 -2.39 -0.02 3.51 16 29 H 0.04 1.49 7.36 -2.38 -0.02 1.47 16 30 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 31 H 0.08 2.39 8.14 -2.38 -0.02 2.37 16 32 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -70.87 269.25 4.71 -66.16 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: 1.06 Total: 6.47 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: 3.31 Total: -6.51 kcal Atomic # 7 Polarization: -61.09 SS G_CDS: 0.30 Total: -60.79 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -1.81 Total: -53.70 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 1.85 Total: 48.36 kcal Total: -70.87 4.71 -66.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260032981.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.502 kcal (2) G-P(sol) polarization free energy of solvation -70.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds