Wall clock time and date at job start Mon Mar 30 2020 02:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39128 * 119.14409 * 2 1 4 4 C 1.36561 * 121.66583 * 180.02562 * 3 2 1 5 5 C 1.39771 * 119.35259 * 359.95670 * 4 3 2 6 6 C 1.41092 * 122.78490 * 180.02562 * 5 4 3 7 7 C 1.50703 * 120.85562 * 0.03905 * 6 5 4 8 8 N 1.31298 * 118.28812 * 180.02562 * 6 5 4 9 9 C 1.33935 * 122.15529 * 359.97438 * 8 6 5 10 10 C 1.41318 * 118.42356 * 180.02562 * 9 8 6 11 11 H 1.08002 * 120.00347 * 180.02562 * 10 9 8 12 12 C 1.40131 * 119.99881 * 359.72646 * 10 9 8 13 13 N 1.30654 * 120.00080 * 0.27871 * 12 10 9 14 14 Si 1.86803 * 119.99972 * 180.27308 * 12 10 9 15 15 H 1.48496 * 109.47191 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.46768 * 120.00047 * 14 12 10 17 17 H 1.48498 * 109.47283 * 240.00298 * 14 12 10 18 18 N 1.33023 * 123.15597 * 0.29065 * 9 8 6 19 19 C 1.33207 * 119.90931 * 359.43656 * 18 9 8 20 20 C 1.36253 * 119.13716 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.47549 * 269.98884 * 1 2 3 22 22 H 1.09004 * 109.46734 * 29.98101 * 1 2 3 23 23 H 1.08994 * 109.47427 * 149.97803 * 1 2 3 24 24 H 1.08000 * 119.16821 * 0.03829 * 3 2 1 25 25 H 1.08009 * 120.32646 * 180.02562 * 4 3 2 26 26 H 1.09000 * 109.47215 * 269.97870 * 7 6 5 27 27 H 1.08999 * 109.47115 * 29.98440 * 7 6 5 28 28 H 1.09007 * 109.47237 * 149.98499 * 7 6 5 29 29 H 0.96996 * 120.00319 * 179.97438 * 13 12 10 30 30 H 1.08004 * 120.34163 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1845 1.2151 0.0000 4 6 3.5488 1.2752 -0.0005 5 6 4.2869 0.0883 -0.0001 6 6 5.6976 0.0659 -0.0001 7 6 6.4910 1.3471 0.0004 8 7 6.3014 -1.1001 -0.0003 9 6 5.6223 -2.2545 0.0001 10 6 6.3524 -3.4644 0.0004 11 1 5.8307 -4.4100 0.0003 12 6 7.7535 -3.4373 -0.0054 13 7 8.3847 -2.2933 -0.0056 14 14 8.7186 -5.0366 -0.0126 15 1 7.7757 -6.1838 -0.0116 16 1 9.5687 -5.0962 -1.2288 17 1 9.5787 -5.1012 1.1962 18 7 4.2935 -2.3169 -0.0051 19 6 3.5759 -1.1947 0.0004 20 6 2.1704 -1.1901 -0.0005 21 1 -0.3634 -0.0002 1.0276 22 1 -0.3633 0.8902 -0.5136 23 1 -0.3634 -0.8897 -0.5141 24 1 1.6172 2.1341 0.0006 25 1 4.0526 2.2306 -0.0001 26 1 6.6826 1.6563 -1.0271 27 1 5.9255 2.1245 0.5143 28 1 7.4389 1.1874 0.5145 29 1 9.3545 -2.2745 -0.0092 30 1 1.6219 -2.1205 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260035912.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:34 Heat of formation + Delta-G solvation = 29.176766 kcal Electronic energy + Delta-G solvation = -14941.569292 eV Core-core repulsion = 12507.315199 eV Total energy + Delta-G solvation = -2434.254093 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.22928 -38.44531 -35.80877 -35.07592 -33.02435 -31.44526 -29.53727 -28.56344 -27.32340 -24.00461 -23.13776 -21.82468 -19.93946 -18.43543 -17.69728 -17.07358 -16.26346 -15.54663 -15.06478 -15.05560 -14.82189 -14.31987 -13.90770 -13.67917 -13.32265 -13.16722 -13.00080 -12.93296 -12.67903 -12.55522 -12.24162 -12.17201 -11.93035 -11.25268 -11.11695 -10.90882 -9.48741 -9.33394 -9.03149 -8.53384 -6.76029 -0.14420 0.37827 1.36237 1.36950 1.54005 1.55624 2.15470 2.32403 2.90802 3.74707 3.84173 3.87203 3.93260 4.19326 4.26966 4.49857 4.69231 4.72478 4.77189 4.83415 4.88789 4.90756 5.03877 5.10178 5.25505 5.31867 5.50328 5.64114 5.74012 5.83806 6.05484 6.24729 6.46890 6.52829 7.16170 8.15536 8.27406 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.040157 B = 0.007710 C = 0.006499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.089397 B = 3630.720236 C = 4307.358434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.031 4.031 3 C -0.198 4.198 4 C -0.034 4.034 5 C -0.292 4.292 6 C 0.187 3.813 7 C -0.086 4.086 8 N -0.517 5.517 9 C 0.361 3.639 10 C -0.421 4.421 11 H 0.087 0.913 12 C 0.023 3.977 13 N -0.732 5.732 14 Si 1.004 2.996 15 H -0.259 1.259 16 H -0.257 1.257 17 H -0.256 1.256 18 N -0.658 5.658 19 C 0.175 3.825 20 C -0.188 4.188 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.066 0.934 24 H 0.152 0.848 25 H 0.152 0.848 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.069 0.931 29 H 0.289 0.711 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.763 7.230 0.017 8.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.034 4.034 3 C -0.217 4.217 4 C -0.055 4.055 5 C -0.300 4.300 6 C 0.021 3.979 7 C -0.143 4.143 8 N -0.232 5.232 9 C 0.125 3.875 10 C -0.455 4.455 11 H 0.105 0.895 12 C -0.202 4.202 13 N -0.353 5.353 14 Si 0.822 3.178 15 H -0.183 1.183 16 H -0.181 1.181 17 H -0.180 1.180 18 N -0.382 5.382 19 C 0.039 3.961 20 C -0.209 4.209 21 H 0.101 0.899 22 H 0.108 0.892 23 H 0.085 0.915 24 H 0.169 0.831 25 H 0.170 0.830 26 H 0.106 0.894 27 H 0.119 0.881 28 H 0.088 0.912 29 H 0.100 0.900 30 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.007 6.274 0.008 7.444 hybrid contribution 0.048 -0.271 -0.011 0.275 sum -3.959 6.003 -0.003 7.191 Atomic orbital electron populations 1.20894 0.88589 1.03724 1.03302 1.19923 0.97753 0.92049 0.93690 1.20787 0.94004 0.97746 1.09206 1.21061 0.94481 0.96169 0.93742 1.20403 0.95512 0.95802 1.18240 1.22880 0.90575 0.96021 0.88417 1.20672 0.99193 0.90792 1.03634 1.68823 1.39879 0.97661 1.16816 1.20338 0.86038 0.92389 0.88689 1.19882 0.92079 0.92037 1.41463 0.89471 1.27173 0.98259 1.02523 0.92292 1.70169 1.10495 1.28582 1.26011 0.84852 0.77617 0.75775 0.79579 1.18255 1.18081 1.18041 1.69173 1.07606 1.29564 1.31895 1.20606 0.95229 0.88900 0.91370 1.20429 0.90595 0.98677 1.11168 0.89876 0.89212 0.91539 0.83072 0.83048 0.89352 0.88147 0.91174 0.89956 0.86877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.54 9.96 71.23 0.71 -1.83 16 2 C -0.03 -1.06 5.84 -20.11 -0.12 -1.17 16 3 C -0.20 -6.23 9.53 22.09 0.21 -6.02 16 4 C -0.03 -1.22 9.37 22.25 0.21 -1.01 16 5 C -0.29 -13.81 5.89 -20.00 -0.12 -13.93 16 6 C 0.19 9.12 6.91 43.34 0.30 9.42 16 7 C -0.09 -3.01 9.83 71.24 0.70 -2.31 16 8 N -0.52 -29.80 7.61 -181.00 -1.38 -31.18 16 9 C 0.36 22.20 7.34 135.07 0.99 23.19 16 10 C -0.42 -24.60 9.34 23.49 0.22 -24.38 16 11 H 0.09 5.00 7.85 -2.91 -0.02 4.98 16 12 C 0.02 1.16 5.50 85.33 0.47 1.63 16 13 N -0.73 -38.43 11.35 21.85 0.25 -38.18 16 14 Si 1.00 37.95 29.56 68.60 2.03 39.98 16 15 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 16 H -0.26 -9.07 7.11 99.48 0.71 -8.37 16 17 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 18 N -0.66 -39.74 10.37 -184.02 -1.91 -41.64 16 19 C 0.18 9.31 6.77 41.71 0.28 9.59 16 20 C -0.19 -8.30 9.64 22.37 0.22 -8.08 16 21 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 22 H 0.09 1.62 8.07 -2.39 -0.02 1.60 16 23 H 0.07 1.51 8.06 -2.39 -0.02 1.50 16 24 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 25 H 0.15 4.08 6.62 -2.91 -0.02 4.07 16 26 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 27 H 0.10 2.73 6.64 -2.39 -0.02 2.72 16 28 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 29 H 0.29 13.27 8.29 -92.71 -0.77 12.50 16 30 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -73.38 262.17 4.21 -69.17 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 1.15 Total: 16.77 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 4.07 Total: -14.91 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -3.04 Total: -111.00 kcal Atomic # 14 Polarization: 37.95 SS G_CDS: 2.03 Total: 39.98 kcal Total: -73.38 4.21 -69.17 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260035912.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.343 kcal (2) G-P(sol) polarization free energy of solvation -73.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds