Wall clock time and date at job start Mon Mar 30 2020 03:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 H 1.08998 * 110.62117 * 305.70047 * 10 9 7 12 12 C 1.54924 * 110.69305 * 182.62225 * 10 9 7 13 13 O 1.44782 * 101.72026 * 206.04434 * 12 10 9 14 14 C 1.43747 * 104.81683 * 36.10361 * 13 12 10 15 15 H 1.09005 * 109.63239 * 95.41746 * 14 13 12 16 16 C 1.53005 * 109.63105 * 215.80600 * 14 13 12 17 17 H 1.09001 * 110.32782 * 59.25164 * 16 14 13 18 18 C 1.54474 * 110.37200 * 296.99734 * 16 14 13 19 19 C 1.54511 * 104.06211 * 217.19168 * 18 16 14 20 20 C 1.54471 * 104.06081 * 359.97438 * 19 18 16 21 21 O 1.44421 * 110.36932 * 181.49771 * 16 14 13 22 22 O 1.43641 * 108.82679 * 335.54510 * 14 13 12 23 23 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 25 25 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 26 26 H 1.09001 * 110.97691 * 324.15710 * 12 10 9 27 27 H 1.09003 * 110.97049 * 87.93391 * 12 10 9 28 28 H 1.09005 * 110.51301 * 335.83627 * 18 16 14 29 29 H 1.09004 * 110.51227 * 98.40974 * 18 16 14 30 30 H 1.09001 * 110.50929 * 118.64933 * 19 18 16 31 31 H 1.09004 * 110.50801 * 241.35626 * 19 18 16 32 32 H 1.09004 * 110.37183 * 142.81381 * 20 19 18 33 33 H 1.09005 * 110.37739 * 265.03662 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 1 3.5883 -3.1968 0.8277 12 6 5.5688 -2.6704 0.0647 13 8 5.8623 -3.9407 -0.5649 14 6 4.8777 -4.0722 -1.6039 15 1 5.2931 -3.7214 -2.5487 16 6 4.4641 -5.5392 -1.7375 17 1 4.0525 -5.9037 -0.7963 18 6 5.6719 -6.4015 -2.1662 19 6 5.0643 -7.4463 -3.1289 20 6 3.5613 -7.0919 -3.1673 21 8 3.5002 -5.6948 -2.8016 22 8 3.7304 -3.2801 -1.2582 23 1 -0.4850 0.8401 0.0004 24 1 3.8745 -0.6801 -0.8911 25 1 3.8751 -0.6805 0.8889 26 1 6.0014 -1.8452 -0.5009 27 1 5.9157 -2.6575 1.0980 28 1 6.4127 -5.7913 -2.6830 29 1 6.1183 -6.8909 -1.3005 30 1 5.5048 -7.3526 -4.1215 31 1 5.2089 -8.4541 -2.7393 32 1 3.1622 -7.2394 -4.1708 33 1 3.0101 -7.6975 -2.4478 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260112648.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:00 Heat of formation + Delta-G solvation = -138.005460 kcal Electronic energy + Delta-G solvation = -16333.333615 eV Core-core repulsion = 13552.228286 eV Total energy + Delta-G solvation = -2781.105329 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.19563 -38.79156 -34.72551 -33.16661 -32.07828 -31.45070 -29.58622 -27.00256 -24.41715 -23.05988 -21.92100 -20.92434 -20.41204 -17.00195 -16.97700 -16.51990 -16.02816 -15.66250 -15.18851 -14.35244 -14.23697 -13.75822 -13.34819 -13.22270 -12.66878 -12.44491 -12.10961 -11.92627 -11.72459 -11.43295 -11.32241 -11.25912 -10.74957 -10.50106 -10.17298 -9.92977 -9.68836 -9.62081 -9.27721 -8.90717 -8.52453 -6.00657 -3.98563 3.31636 3.38255 3.39018 3.42653 4.21356 4.41343 4.45799 4.58141 4.79467 4.99132 5.05813 5.15102 5.27873 5.31909 5.33920 5.44137 5.52879 5.64606 5.67044 5.74265 5.80628 5.91881 5.95624 6.11193 6.28289 6.53446 6.87044 6.95792 7.18684 7.62850 7.77905 8.55937 9.06652 9.59357 11.12975 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.041636 B = 0.006577 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.332569 B = 4256.499225 C = 4740.896332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.066 3.934 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.068 3.932 11 H 0.079 0.921 12 C 0.016 3.984 13 O -0.384 6.384 14 C 0.236 3.764 15 H 0.082 0.918 16 C 0.066 3.934 17 H 0.077 0.923 18 C -0.142 4.142 19 C -0.155 4.155 20 C 0.042 3.958 21 O -0.352 6.352 22 O -0.350 6.350 23 H 0.263 0.737 24 H 0.022 0.978 25 H 0.033 0.967 26 H 0.074 0.926 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.808 -11.724 -3.258 17.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.706 3.294 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.550 4.550 8 H 0.094 0.906 9 C -0.050 4.050 10 C 0.011 3.989 11 H 0.097 0.903 12 C -0.060 4.060 13 O -0.305 6.305 14 C 0.140 3.860 15 H 0.099 0.901 16 C 0.007 3.993 17 H 0.095 0.905 18 C -0.180 4.180 19 C -0.193 4.193 20 C -0.035 4.035 21 O -0.271 6.271 22 O -0.271 6.271 23 H 0.073 0.927 24 H 0.041 0.959 25 H 0.051 0.949 26 H 0.092 0.908 27 H 0.123 0.877 28 H 0.095 0.905 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 12.483 -11.567 -3.420 17.358 hybrid contribution 0.503 0.794 0.082 0.944 sum 12.986 -10.773 -3.338 17.199 Atomic orbital electron populations 1.69915 1.06245 1.26778 1.51066 1.25010 0.94765 0.98975 0.94713 0.86806 0.80208 0.83852 0.78541 1.20233 1.21306 1.19153 1.20989 0.88703 0.94813 1.50506 0.90594 1.19746 0.98640 0.89335 0.97260 1.23881 0.91377 0.97385 0.86261 0.90329 1.24644 0.96771 0.85415 0.99156 1.89061 1.52316 1.39291 1.49855 1.23916 0.80054 0.90284 0.91749 0.90078 1.23281 0.88884 0.94919 0.92200 0.90529 1.22858 0.98176 0.97252 0.99751 1.22963 0.96358 0.99506 1.00471 1.23449 0.95563 0.83475 1.01058 1.89273 1.59764 1.25044 1.52988 1.89208 1.36188 1.62648 1.39053 0.92734 0.95941 0.94866 0.90753 0.87665 0.90462 0.90172 0.90684 0.90612 0.89021 0.92258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.35 13.96 55.43 0.77 -27.58 16 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 3 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.51 -15.00 9.55 -34.44 -0.33 -15.33 16 8 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 9 C -0.01 -0.30 3.81 -27.88 -0.11 -0.41 16 10 C 0.07 1.41 3.59 -25.72 -0.09 1.32 16 11 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 12 C 0.02 0.26 7.40 38.17 0.28 0.55 16 13 O -0.38 -6.37 11.11 -59.01 -0.66 -7.03 16 14 C 0.24 4.20 3.65 37.16 0.14 4.34 16 15 H 0.08 1.38 8.13 -51.93 -0.42 0.96 16 16 C 0.07 1.04 3.31 -25.95 -0.09 0.95 16 17 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 18 C -0.14 -1.69 6.41 -25.16 -0.16 -1.85 16 19 C -0.16 -1.54 7.09 -25.17 -0.18 -1.72 16 20 C 0.04 0.50 7.63 37.93 0.29 0.79 16 21 O -0.35 -6.04 11.31 -39.97 -0.45 -6.50 16 22 O -0.35 -7.85 10.77 -62.34 -0.67 -8.52 16 23 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 24 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 25 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 26 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 27 H 0.11 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.08 0.89 7.87 -51.93 -0.41 0.49 16 29 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 273.51 15.07 4.12 4.12 Total: -1.00 -33.15 273.51 -6.88 -40.02 By element: Atomic # 1 Polarization: 2.89 SS G_CDS: -4.98 Total: -2.09 kcal Atomic # 6 Polarization: -9.14 SS G_CDS: -0.34 Total: -9.49 kcal Atomic # 7 Polarization: -28.35 SS G_CDS: 0.77 Total: -27.58 kcal Atomic # 8 Polarization: -20.27 SS G_CDS: -1.78 Total: -22.05 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -33.15 -6.88 -40.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260112648.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.981 kcal (2) G-P(sol) polarization free energy of solvation -33.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds