Wall clock time and date at job start Mon Mar 30 2020 03:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47164 * 2 1 4 4 C 1.50697 * 109.47221 * 120.00846 * 2 1 3 5 5 H 1.07998 * 120.00441 * 114.35807 * 4 2 1 6 6 C 1.37880 * 119.99705 * 294.35911 * 4 2 1 7 7 N 1.31518 * 120.00157 * 156.98473 * 6 4 2 8 8 Si 1.86806 * 120.00041 * 336.97991 * 6 4 2 9 9 H 1.48495 * 109.46983 * 180.02562 * 8 6 4 10 10 H 1.48497 * 109.47107 * 59.99865 * 8 6 4 11 11 H 1.48506 * 109.47037 * 300.00016 * 8 6 4 12 12 C 1.50709 * 109.46891 * 240.00474 * 2 1 3 13 13 C 1.36327 * 120.73252 * 300.00001 * 12 2 1 14 14 N 1.32533 * 121.98187 * 180.02562 * 13 12 2 15 15 C 1.31348 * 122.80344 * 359.97438 * 14 13 12 16 16 C 1.40184 * 119.70056 * 359.97438 * 15 14 13 17 17 C 1.40486 * 123.03252 * 180.02562 * 16 15 14 18 18 C 1.36319 * 118.53868 * 179.17470 * 17 16 15 19 19 N 1.32564 * 121.98102 * 0.83704 * 18 17 16 20 20 C 1.31318 * 122.81559 * 359.43371 * 19 18 17 21 21 C 1.40240 * 119.69429 * 359.97438 * 20 19 18 22 22 H 1.08995 * 109.46944 * 293.27775 * 1 2 3 23 23 H 1.08997 * 109.46852 * 53.28182 * 1 2 3 24 24 H 1.09000 * 109.46720 * 173.28054 * 1 2 3 25 25 H 0.97000 * 119.99541 * 354.92364 * 7 6 4 26 26 H 1.08011 * 119.00822 * 0.02562 * 13 12 2 27 27 H 1.07999 * 120.14765 * 179.97438 * 15 14 13 28 28 H 1.07999 * 120.73217 * 359.97364 * 17 16 15 29 29 H 1.07995 * 119.00347 * 180.24784 * 18 17 16 30 30 H 1.07999 * 120.15610 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 1.2303 5 1 2.5761 -1.6387 1.1338 6 6 1.7978 -0.1757 2.4793 7 7 1.8100 -0.9528 3.5403 8 14 1.4630 1.6527 2.6646 9 1 1.2447 1.9732 4.0980 10 1 0.2518 2.0155 1.8857 11 1 2.6269 2.4230 2.1572 12 6 2.0324 -0.7104 -1.2306 13 6 1.7121 -2.0153 -1.4613 14 7 2.1406 -2.6640 -2.5346 15 6 2.8987 -2.1038 -3.4493 16 6 3.2840 -0.7635 -3.3065 17 6 4.0920 -0.0952 -4.2413 18 6 4.3972 1.2148 -4.0197 19 7 3.9685 1.8637 -2.9462 20 6 3.2153 1.3021 -2.0287 21 6 2.8346 -0.0404 -2.1687 22 1 -0.3633 0.4061 0.9440 23 1 -0.3633 0.6144 -0.8238 24 1 -0.3633 -1.0206 -0.1202 25 1 1.9104 -1.9121 3.4377 26 1 1.0906 -2.5361 -0.7478 27 1 3.2239 -2.6732 -4.3074 28 1 4.4527 -0.6043 -5.1228 29 1 5.0145 1.7370 -4.7356 30 1 2.8898 1.8716 -1.1708 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260162580.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:45 Heat of formation + Delta-G solvation = 53.142424 kcal Electronic energy + Delta-G solvation = -15160.119953 eV Core-core repulsion = 12726.905089 eV Total energy + Delta-G solvation = -2433.214864 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.90338 -37.93062 -35.33788 -32.52717 -31.99893 -30.77470 -28.79519 -24.98285 -24.56112 -23.88471 -22.66068 -19.76426 -18.07742 -17.81157 -17.05388 -16.41028 -14.72057 -14.40427 -14.33478 -14.08188 -13.76495 -13.43493 -12.85126 -12.72887 -12.56896 -12.12238 -11.83642 -11.39571 -10.71654 -10.50894 -10.18946 -9.89196 -9.84629 -9.74533 -9.46409 -9.08330 -8.86500 -8.31002 -7.73265 -6.57549 -4.20619 0.53375 1.09972 2.13591 3.32111 3.37412 3.45686 3.53657 4.38134 4.40636 4.53651 4.68987 4.79057 4.95215 5.04084 5.10999 5.15768 5.51486 5.68780 5.82055 5.90005 6.10114 6.17118 6.26163 6.42327 6.54757 6.60420 6.80684 6.93935 7.10093 7.27386 7.88912 8.10338 8.25893 8.31460 8.75681 9.45121 10.77973 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.030005 B = 0.009520 C = 0.007934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.953975 B = 2940.487379 C = 3528.152103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 H 0.033 0.967 4 C -0.605 4.605 5 H 0.060 0.940 6 C 0.042 3.958 7 N -0.891 5.891 8 Si 1.031 2.969 9 H -0.283 1.283 10 H -0.274 1.274 11 H -0.280 1.280 12 C -0.027 4.027 13 C 0.063 3.937 14 N -0.464 5.464 15 C 0.097 3.903 16 C -0.080 4.080 17 C -0.147 4.147 18 C 0.067 3.933 19 N -0.491 5.491 20 C 0.160 3.840 21 C -0.095 4.095 22 H 0.058 0.942 23 H 0.025 0.975 24 H 0.047 0.953 25 H 0.271 0.729 26 H 0.158 0.842 27 H 0.158 0.842 28 H 0.137 0.863 29 H 0.150 0.850 30 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.473 2.559 -13.184 13.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.029 3.971 3 H 0.051 0.949 4 C -0.642 4.642 5 H 0.079 0.921 6 C -0.165 4.165 7 N -0.523 5.523 8 Si 0.858 3.142 9 H -0.209 1.209 10 H -0.200 1.200 11 H -0.206 1.206 12 C -0.031 4.031 13 C -0.081 4.081 14 N -0.172 5.172 15 C -0.074 4.074 16 C -0.087 4.087 17 C -0.169 4.169 18 C -0.075 4.075 19 N -0.200 5.200 20 C -0.011 4.011 21 C -0.102 4.102 22 H 0.077 0.923 23 H 0.044 0.956 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.175 0.825 27 H 0.175 0.825 28 H 0.155 0.845 29 H 0.167 0.833 30 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.217 3.721 -12.060 12.680 hybrid contribution 0.430 -1.347 -1.131 1.811 sum 1.647 2.374 -13.192 13.504 Atomic orbital electron populations 1.22203 0.97350 1.00385 1.00036 1.18216 0.92774 0.95582 0.90485 0.94931 1.21819 1.41554 1.10751 0.90069 0.92146 1.25716 0.93094 1.05758 0.91904 1.70848 1.43034 1.06575 1.31838 0.84220 0.77439 0.75951 0.76571 1.20853 1.20000 1.20645 1.21116 0.92205 0.95210 0.94567 1.22133 0.99703 0.92142 0.94139 1.67378 1.08690 1.39118 1.01983 1.22864 0.95750 0.90743 0.98021 1.19109 0.98219 0.96212 0.95181 1.21755 0.99315 0.96134 0.99685 1.22179 0.98292 0.92088 0.94990 1.67492 1.10655 1.39422 1.02399 1.23398 0.90592 0.91038 0.96084 1.19159 0.99636 0.96129 0.95302 0.92262 0.95613 0.93340 0.91858 0.82471 0.82493 0.84510 0.83257 0.81223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.83 37.16 0.33 -2.58 16 2 C 0.05 1.08 2.00 -92.92 -0.19 0.90 16 3 H 0.03 0.70 4.39 -51.93 -0.23 0.48 16 4 C -0.60 -15.89 8.48 -34.44 -0.29 -16.18 16 5 H 0.06 1.74 7.79 -52.49 -0.41 1.33 16 6 C 0.04 1.15 5.20 -17.82 -0.09 1.06 16 7 N -0.89 -26.06 13.70 55.43 0.76 -25.30 16 8 Si 1.03 23.56 26.44 -169.99 -4.49 19.07 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 10 H -0.27 -5.73 6.14 56.52 0.35 -5.38 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 C -0.03 -0.55 4.76 -104.48 -0.50 -1.05 16 13 C 0.06 1.27 9.68 -17.94 -0.17 1.09 16 14 N -0.46 -8.60 10.30 -13.17 -0.14 -8.74 16 15 C 0.10 1.54 11.10 -17.03 -0.19 1.35 16 16 C -0.08 -1.32 5.75 -106.84 -0.61 -1.93 16 17 C -0.15 -1.95 9.92 -39.43 -0.39 -2.34 16 18 C 0.07 0.93 11.06 -17.93 -0.20 0.73 16 19 N -0.49 -8.18 10.30 -13.16 -0.14 -8.31 16 20 C 0.16 2.86 10.69 -17.02 -0.18 2.68 16 21 C -0.10 -1.79 5.75 -106.83 -0.61 -2.40 16 22 H 0.06 1.26 5.46 -51.93 -0.28 0.97 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.05 0.96 7.19 -51.93 -0.37 0.59 16 25 H 0.27 7.92 8.73 -40.82 -0.36 7.57 16 26 H 0.16 3.18 7.50 -52.48 -0.39 2.79 16 27 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 28 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.15 1.53 8.06 -52.49 -0.42 1.11 16 30 H 0.17 2.92 6.18 -52.49 -0.32 2.59 16 LS Contribution 253.85 15.07 3.83 3.83 Total: -1.00 -29.48 253.85 -6.19 -35.67 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -2.91 Total: 2.46 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.10 Total: -18.67 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: 0.49 Total: -42.35 kcal Atomic # 14 Polarization: 23.56 SS G_CDS: -4.49 Total: 19.07 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.48 -6.19 -35.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162580.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.813 kcal (2) G-P(sol) polarization free energy of solvation -29.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds