Wall clock time and date at job start Mon Mar 30 2020 02:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39252 * 119.59373 * 2 1 4 4 C 1.36154 * 121.02331 * 180.28308 * 3 2 1 5 5 C 1.40564 * 119.75770 * 359.48781 * 4 3 2 6 6 N 1.33794 * 120.99064 * 180.23322 * 5 4 3 7 7 C 1.31276 * 121.72065 * 180.27986 * 6 5 4 8 8 C 1.38817 * 121.87641 * 0.02562 * 7 6 5 9 9 C 1.38782 * 119.66038 * 359.97438 * 8 7 6 10 10 N 1.38390 * 121.06807 * 180.02562 * 9 8 7 11 11 C 1.36780 * 119.99864 * 359.97438 * 10 9 8 12 12 H 1.08004 * 119.99996 * 0.02562 * 11 10 9 13 13 C 1.38868 * 119.99824 * 180.02562 * 11 10 9 14 14 N 1.31522 * 120.00219 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00039 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46938 * 60.00513 * 15 13 11 17 17 H 1.48504 * 109.47198 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47278 * 300.00348 * 15 13 11 19 19 C 1.41524 * 119.04553 * 0.50131 * 5 4 3 20 20 C 1.36308 * 119.59554 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.46807 * 269.98109 * 1 2 3 22 22 H 1.08996 * 109.46876 * 29.97379 * 1 2 3 23 23 H 1.08996 * 109.47114 * 149.97706 * 1 2 3 24 24 H 1.07994 * 119.49092 * 0.04650 * 3 2 1 25 25 H 1.08001 * 120.12483 * 179.75225 * 4 3 2 26 26 H 1.07999 * 119.06804 * 180.02562 * 7 6 5 27 27 H 1.07993 * 120.17256 * 179.97438 * 8 7 6 28 28 H 0.97001 * 119.99610 * 180.02562 * 10 9 8 29 29 H 0.96991 * 120.00334 * 179.97438 * 14 13 11 30 30 H 1.07995 * 120.18079 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.2109 0.0000 4 6 3.5558 1.2448 -0.0058 5 6 4.2838 0.0424 -0.0009 6 7 5.6217 0.0470 -0.0017 7 6 6.3158 -1.0673 -0.0027 8 6 5.7028 -2.3128 -0.0035 9 6 4.3175 -2.3964 -0.0027 10 7 3.6761 -3.6227 -0.0029 11 6 4.4088 -4.7777 -0.0044 12 1 5.4879 -4.7327 -0.0050 13 6 3.7651 -6.0082 -0.0052 14 7 2.4510 -6.0630 -0.0049 15 14 4.7657 -7.5856 -0.0065 16 1 5.6221 -7.6296 1.2059 17 1 3.8485 -8.7536 -0.0078 18 1 5.6217 -7.6278 -1.2192 19 6 3.5812 -1.1862 -0.0009 20 6 2.1802 -1.1852 -0.0005 21 1 -0.3633 -0.0003 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 1.6399 2.1374 0.0008 25 1 4.0744 2.1922 -0.0097 26 1 7.3944 -1.0136 -0.0029 27 1 6.3008 -3.2120 -0.0047 28 1 2.7069 -3.6630 -0.0027 29 1 2.0015 -6.9225 -0.0058 30 1 1.6366 -2.1184 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260439989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:42 Heat of formation + Delta-G solvation = 38.397777 kcal Electronic energy + Delta-G solvation = -14839.527455 eV Core-core repulsion = 12405.673215 eV Total energy + Delta-G solvation = -2433.854240 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.82926 -36.81771 -35.79561 -32.80350 -31.35668 -30.30038 -28.69673 -26.27423 -25.18288 -22.68433 -21.84912 -20.52483 -18.31835 -17.54204 -16.32719 -15.52990 -14.94290 -14.30121 -13.95876 -13.69712 -13.31876 -13.26813 -12.90899 -12.86178 -12.12951 -11.84852 -11.80397 -11.77588 -11.03082 -11.02157 -10.71808 -10.52485 -10.49145 -10.13731 -9.38324 -8.36406 -8.32742 -7.81140 -6.97191 -6.75354 -4.08252 1.46473 1.82897 2.85625 2.98540 3.00788 3.15037 3.76859 3.79233 4.66967 4.83874 5.21034 5.27293 5.37926 5.46397 5.60470 5.77661 5.95698 6.00279 6.09179 6.16216 6.32105 6.44307 6.69306 6.77467 6.94265 6.95812 7.09574 7.15965 7.27583 7.39847 7.52914 7.90941 8.34892 8.90996 9.09388 9.23067 10.16999 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.029894 B = 0.008032 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.425105 B = 3485.141390 C = 4406.421037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.146 4.146 3 C -0.092 4.092 4 C -0.133 4.133 5 C 0.184 3.816 6 N -0.592 5.592 7 C 0.174 3.826 8 C -0.323 4.323 9 C 0.217 3.783 10 N -0.510 5.510 11 C -0.302 4.302 12 H 0.113 0.887 13 C 0.027 3.973 14 N -0.871 5.871 15 Si 0.942 3.058 16 H -0.267 1.267 17 H -0.278 1.278 18 H -0.267 1.267 19 C -0.157 4.157 20 C -0.074 4.074 21 H 0.059 0.941 22 H 0.057 0.943 23 H 0.059 0.941 24 H 0.112 0.888 25 H 0.120 0.880 26 H 0.133 0.867 27 H 0.120 0.880 28 H 0.402 0.598 29 H 0.284 0.716 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.331 4.773 0.006 4.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.148 4.148 3 C -0.112 4.112 4 C -0.153 4.153 5 C 0.061 3.939 6 N -0.311 5.311 7 C 0.012 3.988 8 C -0.354 4.354 9 C 0.084 3.916 10 N -0.106 5.106 11 C -0.432 4.432 12 H 0.130 0.870 13 C -0.180 4.180 14 N -0.505 5.505 15 Si 0.767 3.233 16 H -0.192 1.192 17 H -0.203 1.203 18 H -0.192 1.192 19 C -0.164 4.164 20 C -0.094 4.094 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.130 0.870 25 H 0.138 0.862 26 H 0.150 0.850 27 H 0.138 0.862 28 H 0.239 0.761 29 H 0.094 0.906 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.100 5.057 0.005 5.175 hybrid contribution -0.465 -1.805 0.008 1.864 sum -1.565 3.251 0.012 3.608 Atomic orbital electron populations 1.20647 0.92070 1.01817 1.01361 1.19201 0.95378 0.92979 1.07238 1.20490 0.93965 0.96742 0.99965 1.20490 0.93205 0.96572 1.05036 1.18549 0.90029 0.91189 0.94143 1.67972 1.05736 1.30130 1.27228 1.22107 0.98534 0.87712 0.90478 1.20902 0.92765 0.98557 1.23211 1.17869 0.92359 0.84619 0.96719 1.41048 1.09050 1.02381 1.58139 1.19981 0.93372 0.82659 1.47206 0.86951 1.25543 0.96123 1.00458 0.95897 1.69637 1.07762 1.28493 1.44617 0.85719 0.79029 0.78961 0.79640 1.19168 1.20316 1.19174 1.18368 0.93650 0.93288 1.11063 1.20555 0.92900 0.97339 0.98629 0.92232 0.92389 0.92237 0.86967 0.86168 0.84995 0.86232 0.76106 0.90572 0.87021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.40 9.99 36.01 0.36 -1.05 16 2 C -0.15 -2.55 5.85 -104.94 -0.61 -3.16 16 3 C -0.09 -1.54 9.58 -39.95 -0.38 -1.92 16 4 C -0.13 -2.49 9.98 -39.45 -0.39 -2.89 16 5 C 0.18 4.01 6.61 -84.88 -0.56 3.45 16 6 N -0.59 -13.03 10.33 -11.09 -0.11 -13.15 16 7 C 0.17 3.59 11.13 -17.58 -0.20 3.39 16 8 C -0.32 -7.14 9.35 -39.17 -0.37 -7.50 16 9 C 0.22 5.05 6.66 -83.39 -0.56 4.50 16 10 N -0.51 -12.23 5.35 -9.25 -0.05 -12.28 16 11 C -0.30 -7.35 9.57 -15.11 -0.14 -7.49 16 12 H 0.11 2.62 5.75 -52.48 -0.30 2.32 16 13 C 0.03 0.64 5.50 -17.45 -0.10 0.54 16 14 N -0.87 -21.60 13.05 55.49 0.72 -20.87 16 15 Si 0.94 18.40 29.55 -169.99 -5.02 13.37 16 16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 17 H -0.28 -5.39 7.11 56.52 0.40 -4.98 16 18 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 19 C -0.16 -3.50 5.75 -106.64 -0.61 -4.11 16 20 C -0.07 -1.48 9.13 -39.58 -0.36 -1.84 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 23 H 0.06 0.80 8.07 -51.93 -0.42 0.38 16 24 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 25 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 26 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 27 H 0.12 2.53 6.05 -52.49 -0.32 2.21 16 28 H 0.40 9.65 6.10 -40.82 -0.25 9.40 16 29 H 0.28 6.60 8.31 -40.82 -0.34 6.26 16 30 H 0.11 2.18 6.52 -52.49 -0.34 1.84 16 LS Contribution 259.91 15.07 3.92 3.92 Total: -1.00 -26.69 259.91 -7.35 -34.04 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: -2.88 Total: 13.05 kcal Atomic # 6 Polarization: -14.15 SS G_CDS: -3.92 Total: -18.08 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.56 Total: -46.30 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.02 Total: 13.37 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -26.69 -7.35 -34.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.436 kcal (2) G-P(sol) polarization free energy of solvation -26.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds