Wall clock time and date at job start Mon Mar 30 2020 02:56:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 C 1.39252 * 119.59373 * 2 1
4 4 C 1.36154 * 121.02331 * 180.28308 * 3 2 1
5 5 C 1.40564 * 119.75770 * 359.48781 * 4 3 2
6 6 N 1.33794 * 120.99064 * 180.23322 * 5 4 3
7 7 C 1.31276 * 121.72065 * 180.27986 * 6 5 4
8 8 C 1.38817 * 121.87641 * 0.02562 * 7 6 5
9 9 C 1.38782 * 119.66038 * 359.97438 * 8 7 6
10 10 N 1.38390 * 121.06807 * 180.02562 * 9 8 7
11 11 C 1.36780 * 119.99864 * 359.97438 * 10 9 8
12 12 H 1.08004 * 119.99996 * 0.02562 * 11 10 9
13 13 C 1.38868 * 119.99824 * 180.02562 * 11 10 9
14 14 N 1.31522 * 120.00219 * 0.02562 * 13 11 10
15 15 Si 1.86799 * 120.00039 * 180.02562 * 13 11 10
16 16 H 1.48504 * 109.46938 * 60.00513 * 15 13 11
17 17 H 1.48504 * 109.47198 * 180.02562 * 15 13 11
18 18 H 1.48498 * 109.47278 * 300.00348 * 15 13 11
19 19 C 1.41524 * 119.04553 * 0.50131 * 5 4 3
20 20 C 1.36308 * 119.59554 * 180.02562 * 2 1 3
21 21 H 1.09003 * 109.46807 * 269.98109 * 1 2 3
22 22 H 1.08996 * 109.46876 * 29.97379 * 1 2 3
23 23 H 1.08996 * 109.47114 * 149.97706 * 1 2 3
24 24 H 1.07994 * 119.49092 * 0.04650 * 3 2 1
25 25 H 1.08001 * 120.12483 * 179.75225 * 4 3 2
26 26 H 1.07999 * 119.06804 * 180.02562 * 7 6 5
27 27 H 1.07993 * 120.17256 * 179.97438 * 8 7 6
28 28 H 0.97001 * 119.99610 * 180.02562 * 10 9 8
29 29 H 0.96991 * 120.00334 * 179.97438 * 14 13 11
30 30 H 1.07995 * 120.18079 * 359.97438 * 20 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1947 1.2109 0.0000
4 6 3.5558 1.2448 -0.0058
5 6 4.2838 0.0424 -0.0009
6 7 5.6217 0.0470 -0.0017
7 6 6.3158 -1.0673 -0.0027
8 6 5.7028 -2.3128 -0.0035
9 6 4.3175 -2.3964 -0.0027
10 7 3.6761 -3.6227 -0.0029
11 6 4.4088 -4.7777 -0.0044
12 1 5.4879 -4.7327 -0.0050
13 6 3.7651 -6.0082 -0.0052
14 7 2.4510 -6.0630 -0.0049
15 14 4.7657 -7.5856 -0.0065
16 1 5.6221 -7.6296 1.2059
17 1 3.8485 -8.7536 -0.0078
18 1 5.6217 -7.6278 -1.2192
19 6 3.5812 -1.1862 -0.0009
20 6 2.1802 -1.1852 -0.0005
21 1 -0.3633 -0.0003 1.0277
22 1 -0.3633 0.8902 -0.5134
23 1 -0.3633 -0.8897 -0.5142
24 1 1.6399 2.1374 0.0008
25 1 4.0744 2.1922 -0.0097
26 1 7.3944 -1.0136 -0.0029
27 1 6.3008 -3.2120 -0.0047
28 1 2.7069 -3.6630 -0.0027
29 1 2.0015 -6.9225 -0.0058
30 1 1.6366 -2.1184 -0.0005
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260439989.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:56:41
Heat of formation + Delta-G solvation = 23.698098 kcal
Electronic energy + Delta-G solvation = -14840.164881 eV
Core-core repulsion = 12405.673215 eV
Total energy + Delta-G solvation = -2434.491666 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 228.096 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-41.44599 -38.40100 -37.44559 -34.51933 -32.80358 -31.90118 -30.33194 -27.73489
-26.89810 -24.25669 -23.38932 -22.14830 -20.05452 -19.12486 -17.95080 -17.13815
-16.57454 -15.90224 -15.51745 -15.26794 -14.88182 -14.81720 -14.43778 -14.15077
-13.72060 -13.46601 -13.45587 -12.96674 -12.60272 -12.57963 -12.19955 -12.05521
-11.96389 -11.75885 -11.08331 -10.04208 -9.98764 -9.38303 -8.70848 -8.42940
-5.92222 -0.10222 0.23555 1.25880 1.38754 1.50172 1.55558 2.16345
2.26223 2.92289 3.11075 3.54227 3.78118 3.95252 4.03266 4.10342
4.42402 4.51696 4.62718 4.82108 4.87964 4.90796 5.01072 5.09531
5.20855 5.31277 5.37612 5.50837 5.55599 5.69979 5.78606 5.98818
6.30297 6.57937 7.17230 7.32768 7.53297 8.45327
Molecular weight = 228.10amu
Principal moments of inertia in cm(-1)
A = 0.029894 B = 0.008032 C = 0.006353
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 936.425105 B = 3485.141390 C = 4406.421037
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.103 4.103
2 C -0.129 4.129
3 C -0.081 4.081
4 C -0.134 4.134
5 C 0.151 3.849
6 N -0.595 5.595
7 C 0.173 3.827
8 C -0.339 4.339
9 C 0.207 3.793
10 N -0.532 5.532
11 C -0.329 4.329
12 H 0.114 0.886
13 C -0.016 4.016
14 N -0.910 5.910
15 Si 1.006 2.994
16 H -0.262 1.262
17 H -0.275 1.275
18 H -0.262 1.262
19 C -0.180 4.180
20 C -0.100 4.100
21 H 0.075 0.925
22 H 0.087 0.913
23 H 0.058 0.942
24 H 0.159 0.841
25 H 0.142 0.858
26 H 0.169 0.831
27 H 0.122 0.878
28 H 0.396 0.604
29 H 0.285 0.715
30 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.668 6.744 0.012 6.948
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C -0.130 4.130
3 C -0.101 4.101
4 C -0.154 4.154
5 C 0.029 3.971
6 N -0.313 5.313
7 C 0.009 3.991
8 C -0.370 4.370
9 C 0.077 3.923
10 N -0.131 5.131
11 C -0.459 4.459
12 H 0.131 0.869
13 C -0.219 4.219
14 N -0.546 5.546
15 Si 0.828 3.172
16 H -0.187 1.187
17 H -0.200 1.200
18 H -0.187 1.187
19 C -0.186 4.186
20 C -0.120 4.120
21 H 0.093 0.907
22 H 0.106 0.894
23 H 0.077 0.923
24 H 0.177 0.823
25 H 0.159 0.841
26 H 0.186 0.814
27 H 0.140 0.860
28 H 0.232 0.768
29 H 0.094 0.906
30 H 0.123 0.877
Dipole moment (debyes) X Y Z Total
from point charges -1.439 7.083 0.010 7.228
hybrid contribution -0.414 -2.027 0.008 2.069
sum -1.853 5.056 0.018 5.385
Atomic orbital electron populations
1.20752 0.89041 1.03338 1.02813 1.19756 0.97631 0.92244 1.03411
1.20996 0.93446 0.98207 0.97423 1.20849 0.94206 0.96241 1.04082
1.19037 0.90334 0.92227 0.95491 1.68033 1.06147 1.30561 1.26565
1.22624 1.00223 0.86832 0.89387 1.21132 0.92590 0.99479 1.23786
1.18325 0.93221 0.85086 0.95655 1.40992 1.08602 1.02535 1.61012
1.20219 0.93627 0.83379 1.48674 0.86868 1.26398 0.97043 1.03021
0.95400 1.69728 1.09067 1.28998 1.46822 0.84764 0.77572 0.75167
0.79695 1.18686 1.20019 1.18696 1.18641 0.94864 0.93187 1.11948
1.20679 0.92305 0.98491 1.00514 0.90655 0.89420 0.92280 0.82334
0.84064 0.81386 0.86001 0.76842 0.90575 0.87659
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -2.45 9.99 71.24 0.71 -1.74 16
2 C -0.13 -4.15 5.85 -20.07 -0.12 -4.27 16
3 C -0.08 -2.39 9.58 22.03 0.21 -2.18 16
4 C -0.13 -4.64 9.98 22.35 0.22 -4.42 16
5 C 0.15 6.44 6.61 40.22 0.27 6.70 16
6 N -0.59 -25.53 10.33 -189.00 -1.95 -27.48 16
7 C 0.17 7.03 11.13 84.91 0.94 7.97 16
8 C -0.34 -15.21 9.35 22.54 0.21 -14.99 16
9 C 0.21 9.98 6.66 39.08 0.26 10.24 16
10 N -0.53 -26.84 5.35 -183.17 -0.98 -27.82 16
11 C -0.33 -16.74 9.57 84.07 0.80 -15.93 16
12 H 0.11 5.50 5.75 -2.91 -0.02 5.48 16
13 C -0.02 -0.80 5.50 84.89 0.47 -0.33 16
14 N -0.91 -46.99 13.05 21.66 0.28 -46.70 16
15 Si 1.01 38.51 29.55 68.60 2.03 40.54 16
16 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16
17 H -0.28 -10.26 7.11 99.48 0.71 -9.56 16
18 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16
19 C -0.18 -8.10 5.75 -21.17 -0.12 -8.22 16
20 C -0.10 -4.00 9.13 22.27 0.20 -3.79 16
21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16
22 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16
23 H 0.06 1.44 8.07 -2.39 -0.02 1.42 16
24 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16
25 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16
26 H 0.17 5.42 8.06 -2.91 -0.02 5.40 16
27 H 0.12 5.29 6.05 -2.91 -0.02 5.27 16
28 H 0.40 20.20 6.10 -92.71 -0.57 19.64 16
29 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16
30 H 0.11 4.27 6.52 -2.91 -0.02 4.25 16
Total: -1.00 -58.98 259.91 4.04 -54.94
By element:
Atomic # 1 Polarization: 36.89 SS G_CDS: 0.60 Total: 37.49 kcal
Atomic # 6 Polarization: -35.03 SS G_CDS: 4.06 Total: -30.96 kcal
Atomic # 7 Polarization: -99.36 SS G_CDS: -2.65 Total: -102.01 kcal
Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal
Total: -58.98 4.04 -54.94 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260439989.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 78.635 kcal
(2) G-P(sol) polarization free energy of solvation -58.980 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.655 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.937 kcal
(6) G-S(sol) free energy of system = (1) + (5) 23.698 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds