Wall clock time and date at job start Mon Mar 30 2020 02:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39252 * 119.59373 * 2 1 4 4 C 1.36154 * 121.02331 * 180.28308 * 3 2 1 5 5 C 1.40564 * 119.75770 * 359.48781 * 4 3 2 6 6 N 1.33794 * 120.99064 * 180.23322 * 5 4 3 7 7 C 1.31276 * 121.72065 * 180.27986 * 6 5 4 8 8 C 1.38817 * 121.87641 * 0.02562 * 7 6 5 9 9 C 1.38782 * 119.66038 * 359.97438 * 8 7 6 10 10 N 1.38390 * 121.06807 * 180.02562 * 9 8 7 11 11 C 1.36780 * 119.99864 * 359.97438 * 10 9 8 12 12 H 1.08004 * 119.99996 * 0.02562 * 11 10 9 13 13 C 1.38868 * 119.99824 * 180.02562 * 11 10 9 14 14 N 1.31522 * 120.00219 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00039 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46938 * 60.00513 * 15 13 11 17 17 H 1.48504 * 109.47198 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47278 * 300.00348 * 15 13 11 19 19 C 1.41524 * 119.04553 * 0.50131 * 5 4 3 20 20 C 1.36308 * 119.59554 * 180.02562 * 2 1 3 21 21 H 1.09003 * 109.46807 * 269.98109 * 1 2 3 22 22 H 1.08996 * 109.46876 * 29.97379 * 1 2 3 23 23 H 1.08996 * 109.47114 * 149.97706 * 1 2 3 24 24 H 1.07994 * 119.49092 * 0.04650 * 3 2 1 25 25 H 1.08001 * 120.12483 * 179.75225 * 4 3 2 26 26 H 1.07999 * 119.06804 * 180.02562 * 7 6 5 27 27 H 1.07993 * 120.17256 * 179.97438 * 8 7 6 28 28 H 0.97001 * 119.99610 * 180.02562 * 10 9 8 29 29 H 0.96991 * 120.00334 * 179.97438 * 14 13 11 30 30 H 1.07995 * 120.18079 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1947 1.2109 0.0000 4 6 3.5558 1.2448 -0.0058 5 6 4.2838 0.0424 -0.0009 6 7 5.6217 0.0470 -0.0017 7 6 6.3158 -1.0673 -0.0027 8 6 5.7028 -2.3128 -0.0035 9 6 4.3175 -2.3964 -0.0027 10 7 3.6761 -3.6227 -0.0029 11 6 4.4088 -4.7777 -0.0044 12 1 5.4879 -4.7327 -0.0050 13 6 3.7651 -6.0082 -0.0052 14 7 2.4510 -6.0630 -0.0049 15 14 4.7657 -7.5856 -0.0065 16 1 5.6221 -7.6296 1.2059 17 1 3.8485 -8.7536 -0.0078 18 1 5.6217 -7.6278 -1.2192 19 6 3.5812 -1.1862 -0.0009 20 6 2.1802 -1.1852 -0.0005 21 1 -0.3633 -0.0003 1.0277 22 1 -0.3633 0.8902 -0.5134 23 1 -0.3633 -0.8897 -0.5142 24 1 1.6399 2.1374 0.0008 25 1 4.0744 2.1922 -0.0097 26 1 7.3944 -1.0136 -0.0029 27 1 6.3008 -3.2120 -0.0047 28 1 2.7069 -3.6630 -0.0027 29 1 2.0015 -6.9225 -0.0058 30 1 1.6366 -2.1184 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260439989.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:41 Heat of formation + Delta-G solvation = 23.698098 kcal Electronic energy + Delta-G solvation = -14840.164881 eV Core-core repulsion = 12405.673215 eV Total energy + Delta-G solvation = -2434.491666 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.44599 -38.40100 -37.44559 -34.51933 -32.80358 -31.90118 -30.33194 -27.73489 -26.89810 -24.25669 -23.38932 -22.14830 -20.05452 -19.12486 -17.95080 -17.13815 -16.57454 -15.90224 -15.51745 -15.26794 -14.88182 -14.81720 -14.43778 -14.15077 -13.72060 -13.46601 -13.45587 -12.96674 -12.60272 -12.57963 -12.19955 -12.05521 -11.96389 -11.75885 -11.08331 -10.04208 -9.98764 -9.38303 -8.70848 -8.42940 -5.92222 -0.10222 0.23555 1.25880 1.38754 1.50172 1.55558 2.16345 2.26223 2.92289 3.11075 3.54227 3.78118 3.95252 4.03266 4.10342 4.42402 4.51696 4.62718 4.82108 4.87964 4.90796 5.01072 5.09531 5.20855 5.31277 5.37612 5.50837 5.55599 5.69979 5.78606 5.98818 6.30297 6.57937 7.17230 7.32768 7.53297 8.45327 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.029894 B = 0.008032 C = 0.006353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.425105 B = 3485.141390 C = 4406.421037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.129 4.129 3 C -0.081 4.081 4 C -0.134 4.134 5 C 0.151 3.849 6 N -0.595 5.595 7 C 0.173 3.827 8 C -0.339 4.339 9 C 0.207 3.793 10 N -0.532 5.532 11 C -0.329 4.329 12 H 0.114 0.886 13 C -0.016 4.016 14 N -0.910 5.910 15 Si 1.006 2.994 16 H -0.262 1.262 17 H -0.275 1.275 18 H -0.262 1.262 19 C -0.180 4.180 20 C -0.100 4.100 21 H 0.075 0.925 22 H 0.087 0.913 23 H 0.058 0.942 24 H 0.159 0.841 25 H 0.142 0.858 26 H 0.169 0.831 27 H 0.122 0.878 28 H 0.396 0.604 29 H 0.285 0.715 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.668 6.744 0.012 6.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.130 4.130 3 C -0.101 4.101 4 C -0.154 4.154 5 C 0.029 3.971 6 N -0.313 5.313 7 C 0.009 3.991 8 C -0.370 4.370 9 C 0.077 3.923 10 N -0.131 5.131 11 C -0.459 4.459 12 H 0.131 0.869 13 C -0.219 4.219 14 N -0.546 5.546 15 Si 0.828 3.172 16 H -0.187 1.187 17 H -0.200 1.200 18 H -0.187 1.187 19 C -0.186 4.186 20 C -0.120 4.120 21 H 0.093 0.907 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.177 0.823 25 H 0.159 0.841 26 H 0.186 0.814 27 H 0.140 0.860 28 H 0.232 0.768 29 H 0.094 0.906 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.439 7.083 0.010 7.228 hybrid contribution -0.414 -2.027 0.008 2.069 sum -1.853 5.056 0.018 5.385 Atomic orbital electron populations 1.20752 0.89041 1.03338 1.02813 1.19756 0.97631 0.92244 1.03411 1.20996 0.93446 0.98207 0.97423 1.20849 0.94206 0.96241 1.04082 1.19037 0.90334 0.92227 0.95491 1.68033 1.06147 1.30561 1.26565 1.22624 1.00223 0.86832 0.89387 1.21132 0.92590 0.99479 1.23786 1.18325 0.93221 0.85086 0.95655 1.40992 1.08602 1.02535 1.61012 1.20219 0.93627 0.83379 1.48674 0.86868 1.26398 0.97043 1.03021 0.95400 1.69728 1.09067 1.28998 1.46822 0.84764 0.77572 0.75167 0.79695 1.18686 1.20019 1.18696 1.18641 0.94864 0.93187 1.11948 1.20679 0.92305 0.98491 1.00514 0.90655 0.89420 0.92280 0.82334 0.84064 0.81386 0.86001 0.76842 0.90575 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.45 9.99 71.24 0.71 -1.74 16 2 C -0.13 -4.15 5.85 -20.07 -0.12 -4.27 16 3 C -0.08 -2.39 9.58 22.03 0.21 -2.18 16 4 C -0.13 -4.64 9.98 22.35 0.22 -4.42 16 5 C 0.15 6.44 6.61 40.22 0.27 6.70 16 6 N -0.59 -25.53 10.33 -189.00 -1.95 -27.48 16 7 C 0.17 7.03 11.13 84.91 0.94 7.97 16 8 C -0.34 -15.21 9.35 22.54 0.21 -14.99 16 9 C 0.21 9.98 6.66 39.08 0.26 10.24 16 10 N -0.53 -26.84 5.35 -183.17 -0.98 -27.82 16 11 C -0.33 -16.74 9.57 84.07 0.80 -15.93 16 12 H 0.11 5.50 5.75 -2.91 -0.02 5.48 16 13 C -0.02 -0.80 5.50 84.89 0.47 -0.33 16 14 N -0.91 -46.99 13.05 21.66 0.28 -46.70 16 15 Si 1.01 38.51 29.55 68.60 2.03 40.54 16 16 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 17 H -0.28 -10.26 7.11 99.48 0.71 -9.56 16 18 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 19 C -0.18 -8.10 5.75 -21.17 -0.12 -8.22 16 20 C -0.10 -4.00 9.13 22.27 0.20 -3.79 16 21 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 22 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 23 H 0.06 1.44 8.07 -2.39 -0.02 1.42 16 24 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 25 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 26 H 0.17 5.42 8.06 -2.91 -0.02 5.40 16 27 H 0.12 5.29 6.05 -2.91 -0.02 5.27 16 28 H 0.40 20.20 6.10 -92.71 -0.57 19.64 16 29 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 30 H 0.11 4.27 6.52 -2.91 -0.02 4.25 16 Total: -1.00 -58.98 259.91 4.04 -54.94 By element: Atomic # 1 Polarization: 36.89 SS G_CDS: 0.60 Total: 37.49 kcal Atomic # 6 Polarization: -35.03 SS G_CDS: 4.06 Total: -30.96 kcal Atomic # 7 Polarization: -99.36 SS G_CDS: -2.65 Total: -102.01 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -58.98 4.04 -54.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260439989.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.635 kcal (2) G-P(sol) polarization free energy of solvation -58.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds