Wall clock time and date at job start Mon Mar 30 2020 02:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86802 * 120.00320 * 2 1 4 4 H 1.48498 * 109.47262 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47199 * 300.00331 * 3 2 1 6 6 H 1.48504 * 109.46985 * 59.99850 * 3 2 1 7 7 C 1.37879 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00122 * 359.97438 * 7 2 1 10 10 C 1.50698 * 109.47353 * 180.02562 * 9 7 2 11 11 C 1.39497 * 126.07165 * 264.97974 * 10 9 7 12 12 N 1.30892 * 108.59721 * 180.02562 * 11 10 9 13 13 N 1.40075 * 108.50553 * 359.97438 * 12 11 10 14 14 H 0.97008 * 126.13952 * 179.74110 * 13 12 11 15 15 C 1.36288 * 107.72235 * 0.02562 * 13 12 11 16 16 C 1.47984 * 126.33800 * 179.97438 * 15 13 12 17 17 C 1.39507 * 120.13403 * 224.74742 * 16 15 13 18 18 C 1.37976 * 119.85558 * 179.76990 * 17 16 15 19 19 C 1.38346 * 120.13914 * 0.50876 * 18 17 16 20 20 C 1.38345 * 120.27860 * 359.74669 * 19 18 17 21 21 C 1.37977 * 120.13535 * 359.97438 * 20 19 18 22 22 H 0.97003 * 120.00009 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.46694 * 59.99923 * 9 7 2 24 24 H 1.09001 * 109.47375 * 300.00279 * 9 7 2 25 25 H 1.08002 * 125.70412 * 0.02562 * 11 10 9 26 26 H 1.07998 * 120.07300 * 0.02562 * 17 16 15 27 27 H 1.08000 * 119.92916 * 180.27407 * 18 17 16 28 28 H 1.08001 * 119.86070 * 179.71740 * 19 18 17 29 29 H 1.07999 * 119.93102 * 180.02562 * 20 19 18 30 30 H 1.07999 * 120.06983 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2302 -3.6446 0.0027 11 6 2.6889 -4.3341 -1.1199 12 7 3.5259 -5.2607 -0.7274 13 7 3.6356 -5.1988 0.6676 14 1 4.1855 -5.7723 1.2243 15 6 2.8263 -4.1925 1.1032 16 6 2.6294 -3.7714 2.5081 17 6 1.3451 -3.5157 2.9892 18 6 1.1677 -3.1280 4.3014 19 6 2.2610 -2.9825 5.1366 20 6 3.5375 -3.2295 4.6641 21 6 3.7276 -3.6233 3.3554 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5574 -0.8880 24 1 0.6246 -2.5563 0.8919 25 1 2.4015 -4.1363 -2.1420 26 1 0.4912 -3.6249 2.3370 27 1 0.1736 -2.9340 4.6763 28 1 2.1173 -2.6744 6.1617 29 1 4.3870 -3.1146 5.3211 30 1 4.7246 -3.8163 2.9877 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260491814.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:04 Heat of formation + Delta-G solvation = 87.747539 kcal Electronic energy + Delta-G solvation = -14954.090253 eV Core-core repulsion = 12522.375979 eV Total energy + Delta-G solvation = -2431.714274 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.53731 -38.39507 -33.42870 -32.04054 -31.23854 -30.44702 -28.92841 -26.50776 -23.31378 -22.41152 -21.90812 -20.84208 -18.86533 -17.21261 -16.22375 -15.90158 -14.84103 -14.59751 -14.41859 -13.71847 -13.51109 -13.17446 -12.62500 -12.45767 -12.26495 -11.84115 -11.45983 -10.95319 -10.83886 -10.77867 -10.44794 -10.09033 -9.54024 -9.36010 -9.19380 -8.59857 -8.41601 -8.32334 -7.33203 -5.95861 -3.97448 1.41422 1.75490 2.58888 3.33202 3.40392 3.40787 3.45115 3.59482 4.19230 4.51919 5.05815 5.19618 5.25635 5.37598 5.43863 5.54797 5.76150 5.88532 6.14041 6.21971 6.40266 6.45430 6.71315 6.76870 6.82867 6.97869 7.28985 7.39062 7.64603 7.76315 7.85137 8.00431 8.31866 8.44856 9.06610 9.65424 11.13465 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.018081 B = 0.011137 C = 0.008107 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.220921 B = 2513.554475 C = 3452.880781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.059 3.941 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.500 4.500 8 H 0.053 0.947 9 C 0.078 3.922 10 C -0.155 4.155 11 C 0.045 3.955 12 N -0.305 5.305 13 N -0.487 5.487 14 H 0.429 0.571 15 C 0.089 3.911 16 C -0.005 4.005 17 C -0.076 4.076 18 C -0.117 4.117 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.113 4.113 22 H 0.259 0.741 23 H 0.027 0.973 24 H 0.032 0.968 25 H 0.179 0.821 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -7.500 7.817 11.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.142 4.142 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.539 4.539 8 H 0.071 0.929 9 C 0.041 3.959 10 C -0.166 4.166 11 C -0.140 4.140 12 N -0.128 5.128 13 N -0.198 5.198 14 H 0.271 0.729 15 C -0.036 4.036 16 C -0.007 4.007 17 C -0.095 4.095 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.143 4.143 21 C -0.132 4.132 22 H 0.069 0.931 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.196 0.804 26 H 0.151 0.849 27 H 0.141 0.859 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.588 -8.315 7.386 12.031 hybrid contribution 0.335 1.527 0.448 1.626 sum 4.923 -6.788 7.834 11.476 Atomic orbital electron populations 1.69948 1.05872 1.26413 1.51311 1.24947 0.94798 0.98920 0.95517 0.86592 0.80238 0.84050 0.77522 1.19853 1.21037 1.21085 1.21122 0.92913 0.90092 1.49772 0.92902 1.17840 0.91716 0.88290 0.98094 1.20958 1.04437 1.01468 0.89699 1.23693 0.96072 0.93981 1.00236 1.77094 1.22656 1.24113 0.88904 1.46359 1.38573 1.29142 1.05688 0.72891 1.19279 0.97325 0.93670 0.93326 1.17941 0.93684 0.99773 0.89280 1.21308 0.96611 0.96469 0.95106 1.21061 0.98914 0.99809 0.93769 1.21131 0.92808 1.00528 0.99619 1.20914 0.97072 1.00873 0.95441 1.21106 0.97692 1.00660 0.93758 0.93101 0.95437 0.95020 0.80391 0.84890 0.85919 0.86455 0.86383 0.86669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.50 -13.99 9.09 -34.44 -0.31 -14.31 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.11 16 9 C 0.08 1.99 5.15 -29.04 -0.15 1.84 16 10 C -0.16 -3.42 5.28 -104.74 -0.55 -3.97 16 11 C 0.05 0.91 11.92 -17.48 -0.21 0.70 16 12 N -0.30 -5.85 12.68 30.56 0.39 -5.47 16 13 N -0.49 -8.50 7.43 33.28 0.25 -8.25 16 14 H 0.43 5.89 8.96 -182.61 -1.64 4.25 16 15 C 0.09 1.74 6.66 -82.48 -0.55 1.20 16 16 C 0.00 -0.09 5.69 -104.96 -0.60 -0.68 16 17 C -0.08 -1.36 8.64 -39.20 -0.34 -1.70 16 18 C -0.12 -1.81 10.03 -39.64 -0.40 -2.21 16 19 C -0.12 -1.70 10.04 -39.50 -0.40 -2.10 16 20 C -0.12 -1.75 10.03 -39.64 -0.40 -2.14 16 21 C -0.11 -1.79 9.79 -39.21 -0.38 -2.17 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 24 H 0.03 0.82 5.35 -51.93 -0.28 0.54 16 25 H 0.18 3.15 8.06 -52.49 -0.42 2.73 16 26 H 0.13 2.47 6.45 -52.49 -0.34 2.13 16 27 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 29 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 LS Contribution 267.30 15.07 4.03 4.03 Total: -1.00 -31.22 267.30 -8.34 -39.56 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.33 Total: 2.77 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -4.38 Total: -24.00 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 1.37 Total: -39.13 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.22 -8.34 -39.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260491814.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.307 kcal (2) G-P(sol) polarization free energy of solvation -31.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds