Wall clock time and date at job start Mon Mar 30 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37861 * 120.09298 * 2 1 4 4 C 1.38429 * 120.18246 * 179.70134 * 3 2 1 5 5 C 1.38476 * 120.35685 * 0.59893 * 4 3 2 6 6 C 1.37827 * 120.18113 * 359.68262 * 5 4 3 7 7 C 1.39940 * 120.09134 * 180.27662 * 2 1 3 8 8 C 1.47195 * 120.17697 * 359.97438 * 7 2 1 9 9 N 1.36223 * 126.66801 * 245.02676 * 8 7 2 10 10 H 0.96995 * 125.78503 * 0.02562 * 9 8 7 11 11 N 1.39855 * 108.42341 * 179.97438 * 9 8 7 12 12 C 1.30214 * 109.66947 * 359.97438 * 11 9 8 13 13 C 1.40867 * 126.66359 * 64.71139 * 8 7 2 14 14 C 1.40894 * 126.62825 * 359.97438 * 13 8 7 15 15 H 1.07994 * 119.99913 * 359.97438 * 14 13 8 16 16 C 1.39869 * 119.99791 * 179.97438 * 14 13 8 17 17 N 1.30938 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99816 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47102 * 89.99819 * 18 16 14 20 20 H 1.48500 * 109.47177 * 209.99743 * 18 16 14 21 21 H 1.48497 * 109.47230 * 329.99918 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.72309 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72410 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72391 * 1 2 3 25 25 H 1.08004 * 119.91192 * 0.02562 * 3 2 1 26 26 H 1.07994 * 119.82237 * 180.28388 * 4 3 2 27 27 H 1.07998 * 119.90591 * 179.70578 * 5 4 3 28 28 H 1.07993 * 120.08849 * 180.02562 * 6 5 4 29 29 H 1.07997 * 125.75616 * 180.02562 * 12 11 9 30 30 H 0.97000 * 120.00470 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1928 0.0000 4 6 3.5825 1.1950 0.0062 5 6 4.2843 0.0012 0.0000 6 6 3.6083 -1.1999 -0.0058 7 6 2.2087 -1.2108 -0.0058 8 6 1.4787 -2.4889 -0.0114 9 7 1.4762 -3.4287 0.9747 10 1 1.9603 -3.3721 1.8133 11 7 0.6563 -4.4883 0.5735 12 6 0.1619 -4.2380 -0.6048 13 6 0.6420 -2.9753 -1.0351 14 6 0.3414 -2.3318 -2.2519 15 1 0.7698 -1.3651 -2.4717 16 6 -0.5118 -2.9450 -3.1751 17 7 -1.0308 -4.1173 -2.9088 18 14 -0.9108 -2.0916 -4.7882 19 1 0.0831 -2.4890 -5.8176 20 1 -2.2708 -2.4873 -5.2344 21 1 -0.8619 -0.6201 -4.5950 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3633 -0.8875 -0.5181 24 1 -0.3633 0.8925 -0.5096 25 1 1.6583 2.1282 0.0004 26 1 4.1181 2.1327 0.0108 27 1 5.3642 0.0114 0.0002 28 1 4.1571 -2.1300 -0.0102 29 1 -0.5047 -4.8819 -1.1592 30 1 -1.6222 -4.5428 -3.5492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260623835.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:21 Heat of formation + Delta-G solvation = 79.069179 kcal Electronic energy + Delta-G solvation = -15193.812087 eV Core-core repulsion = 12761.721491 eV Total energy + Delta-G solvation = -2432.090596 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.42776 -38.05728 -33.61722 -32.27496 -31.18399 -29.53621 -28.20029 -26.31763 -24.67003 -22.13835 -20.80054 -19.83835 -19.13227 -17.31920 -15.87577 -15.02957 -14.88433 -14.62534 -14.01000 -13.11310 -12.91338 -12.74437 -12.62650 -12.51730 -11.66596 -11.55160 -11.37395 -11.19420 -11.06325 -10.72191 -10.47608 -10.23891 -10.10544 -9.34538 -8.98710 -8.30571 -8.12079 -7.74316 -7.14623 -6.56607 -4.06688 1.83809 1.96609 2.98932 3.15654 3.20168 3.37741 4.05367 4.23211 4.32321 4.53512 5.39091 5.40863 5.53350 5.54406 5.74678 5.96424 6.09263 6.30498 6.37128 6.55298 6.64216 6.73560 6.99325 7.00576 7.08968 7.21358 7.33232 7.50433 7.55539 7.66501 8.06491 8.55294 8.79617 8.97739 9.05479 9.44021 10.40855 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.010794 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.265258 B = 2593.454421 C = 3326.455267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.065 4.065 3 C -0.126 4.126 4 C -0.138 4.138 5 C -0.131 4.131 6 C -0.119 4.119 7 C 0.038 3.962 8 C -0.084 4.084 9 N -0.501 5.501 10 H 0.413 0.587 11 N -0.325 5.325 12 C 0.023 3.977 13 C 0.014 3.986 14 C -0.424 4.424 15 H 0.073 0.927 16 C 0.068 3.932 17 N -0.829 5.829 18 Si 0.913 3.087 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.264 1.264 22 H 0.055 0.945 23 H 0.105 0.895 24 H 0.052 0.948 25 H 0.113 0.887 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.114 0.886 29 H 0.203 0.797 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 6.922 2.534 8.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.066 4.066 3 C -0.144 4.144 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.138 4.138 7 C 0.036 3.964 8 C -0.204 4.204 9 N -0.215 5.215 10 H 0.252 0.748 11 N -0.148 5.148 12 C -0.165 4.165 13 C 0.004 3.996 14 C -0.457 4.457 15 H 0.092 0.908 16 C -0.144 4.144 17 N -0.460 5.460 18 Si 0.738 3.262 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.188 1.188 22 H 0.073 0.927 23 H 0.123 0.877 24 H 0.071 0.929 25 H 0.132 0.868 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.219 0.781 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.807 5.933 3.292 7.780 hybrid contribution 0.180 1.018 -1.077 1.493 sum 3.987 6.951 2.215 8.314 Atomic orbital electron populations 1.20989 0.91150 1.04516 1.01422 1.20170 0.96378 0.91908 0.98167 1.20882 0.94076 0.97173 1.02319 1.20989 0.94195 0.97400 1.03086 1.20883 0.98999 0.92627 1.02447 1.21357 0.93854 0.97463 1.01162 1.17882 0.91291 0.90496 0.96711 1.19131 1.12529 0.93589 0.95135 1.45565 1.43318 1.15765 1.16815 0.74762 1.76376 1.10938 1.10108 1.17360 1.25021 1.01347 0.98358 0.91808 1.18056 0.94651 0.93210 0.93633 1.18731 1.23793 1.03992 0.99221 0.90849 1.25739 0.94581 0.94462 0.99651 1.69418 1.26739 1.14249 1.35549 0.86221 0.78024 0.80406 0.81500 1.19796 1.20467 1.18834 0.92669 0.87651 0.92886 0.86849 0.87115 0.87034 0.86812 0.78065 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.38 9.62 36.01 0.35 -2.03 16 2 C -0.07 -1.27 5.92 -104.12 -0.62 -1.88 16 3 C -0.13 -2.11 9.68 -39.65 -0.38 -2.49 16 4 C -0.14 -2.13 10.04 -39.42 -0.40 -2.52 16 5 C -0.13 -2.10 10.03 -39.64 -0.40 -2.50 16 6 C -0.12 -2.22 9.80 -39.08 -0.38 -2.60 16 7 C 0.04 0.80 5.53 -104.97 -0.58 0.22 16 8 C -0.08 -1.97 5.91 -81.29 -0.48 -2.45 16 9 N -0.50 -11.29 7.37 33.89 0.25 -11.04 16 10 H 0.41 7.90 8.96 -182.79 -1.64 6.26 16 11 N -0.33 -8.09 12.57 30.93 0.39 -7.70 16 12 C 0.02 0.60 10.89 -16.88 -0.18 0.42 16 13 C 0.01 0.37 4.96 -106.54 -0.53 -0.15 16 14 C -0.42 -11.02 7.63 -37.97 -0.29 -11.31 16 15 H 0.07 1.90 7.78 -52.49 -0.41 1.49 16 16 C 0.07 1.70 5.49 -17.32 -0.10 1.60 16 17 N -0.83 -20.96 10.31 55.54 0.57 -20.39 16 18 Si 0.91 19.07 29.56 -169.99 -5.02 14.05 16 19 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 20 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 21 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 22 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.10 2.37 4.56 -51.93 -0.24 2.13 16 24 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 25 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 26 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.20 5.37 5.74 -52.49 -0.30 5.07 16 30 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 LS Contribution 260.43 15.07 3.92 3.92 Total: -1.00 -27.54 260.43 -8.13 -35.67 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.25 Total: 11.19 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -3.99 Total: -25.70 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 1.21 Total: -39.14 kcal Atomic # 14 Polarization: 19.07 SS G_CDS: -5.02 Total: 14.05 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -27.54 -8.13 -35.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623835.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.743 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds