Wall clock time and date at job start Mon Mar 30 2020 02:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37861 * 120.09298 * 2 1 4 4 C 1.38429 * 120.18246 * 179.70134 * 3 2 1 5 5 C 1.38476 * 120.35685 * 0.59893 * 4 3 2 6 6 C 1.37827 * 120.18113 * 359.68262 * 5 4 3 7 7 C 1.39940 * 120.09134 * 180.27662 * 2 1 3 8 8 C 1.47195 * 120.17697 * 359.97438 * 7 2 1 9 9 N 1.36223 * 126.66801 * 245.02676 * 8 7 2 10 10 H 0.96995 * 125.78503 * 0.02562 * 9 8 7 11 11 N 1.39855 * 108.42341 * 179.97438 * 9 8 7 12 12 C 1.30214 * 109.66947 * 359.97438 * 11 9 8 13 13 C 1.40867 * 126.66359 * 64.71139 * 8 7 2 14 14 C 1.40894 * 126.62825 * 359.97438 * 13 8 7 15 15 H 1.07994 * 119.99913 * 359.97438 * 14 13 8 16 16 C 1.39869 * 119.99791 * 179.97438 * 14 13 8 17 17 N 1.30938 * 120.00277 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99816 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47102 * 89.99819 * 18 16 14 20 20 H 1.48500 * 109.47177 * 209.99743 * 18 16 14 21 21 H 1.48497 * 109.47230 * 329.99918 * 18 16 14 22 22 H 1.09002 * 109.47152 * 269.72309 * 1 2 3 23 23 H 1.09001 * 109.46980 * 149.72410 * 1 2 3 24 24 H 1.09004 * 109.47113 * 29.72391 * 1 2 3 25 25 H 1.08004 * 119.91192 * 0.02562 * 3 2 1 26 26 H 1.07994 * 119.82237 * 180.28388 * 4 3 2 27 27 H 1.07998 * 119.90591 * 179.70578 * 5 4 3 28 28 H 1.07993 * 120.08849 * 180.02562 * 6 5 4 29 29 H 1.07997 * 125.75616 * 180.02562 * 12 11 9 30 30 H 0.97000 * 120.00470 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1928 0.0000 4 6 3.5825 1.1950 0.0062 5 6 4.2843 0.0012 0.0000 6 6 3.6083 -1.1999 -0.0058 7 6 2.2087 -1.2108 -0.0058 8 6 1.4787 -2.4889 -0.0114 9 7 1.4762 -3.4287 0.9747 10 1 1.9603 -3.3721 1.8133 11 7 0.6563 -4.4883 0.5735 12 6 0.1619 -4.2380 -0.6048 13 6 0.6420 -2.9753 -1.0351 14 6 0.3414 -2.3318 -2.2519 15 1 0.7698 -1.3651 -2.4717 16 6 -0.5118 -2.9450 -3.1751 17 7 -1.0308 -4.1173 -2.9088 18 14 -0.9108 -2.0916 -4.7882 19 1 0.0831 -2.4890 -5.8176 20 1 -2.2708 -2.4873 -5.2344 21 1 -0.8619 -0.6201 -4.5950 22 1 -0.3633 -0.0050 1.0277 23 1 -0.3633 -0.8875 -0.5181 24 1 -0.3633 0.8925 -0.5096 25 1 1.6583 2.1282 0.0004 26 1 4.1181 2.1327 0.0108 27 1 5.3642 0.0114 0.0002 28 1 4.1571 -2.1300 -0.0102 29 1 -0.5047 -4.8819 -1.1592 30 1 -1.6222 -4.5428 -3.5492 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260623835.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:21 Heat of formation + Delta-G solvation = 63.679928 kcal Electronic energy + Delta-G solvation = -15194.479415 eV Core-core repulsion = 12761.721491 eV Total energy + Delta-G solvation = -2432.757924 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.20970 -39.55768 -35.47401 -33.71846 -32.72824 -31.42219 -29.91570 -27.80502 -26.48033 -23.65139 -22.23505 -21.75607 -20.92114 -19.05022 -17.54443 -16.66013 -16.47957 -16.10889 -15.53796 -14.73395 -14.61239 -14.48667 -14.30845 -13.88323 -13.37264 -13.08925 -12.89959 -12.85892 -12.71438 -12.49244 -11.90478 -11.80500 -11.70952 -11.16996 -10.90486 -9.94577 -9.58792 -9.43305 -8.96307 -8.39403 -5.98933 0.41992 0.61357 1.28633 1.45167 1.56470 1.58687 2.32400 2.38198 2.58619 3.01270 3.55296 4.12407 4.16143 4.22507 4.32372 4.57183 4.76152 4.81666 4.88289 4.93661 5.13761 5.18566 5.33323 5.48970 5.56726 5.64505 5.68979 5.75559 5.97720 6.09250 6.25986 6.60308 6.94074 7.13474 7.15339 7.51239 8.59987 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.023073 B = 0.010794 C = 0.008415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.265258 B = 2593.454421 C = 3326.455267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.081 4.081 3 C -0.127 4.127 4 C -0.123 4.123 5 C -0.126 4.126 6 C -0.128 4.128 7 C -0.003 4.003 8 C -0.058 4.058 9 N -0.486 5.486 10 H 0.428 0.572 11 N -0.341 5.341 12 C -0.002 4.002 13 C -0.024 4.024 14 C -0.445 4.445 15 H 0.066 0.934 16 C 0.025 3.975 17 N -0.858 5.858 18 Si 0.978 3.022 19 H -0.270 1.270 20 H -0.272 1.272 21 H -0.261 1.261 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.073 0.927 25 H 0.142 0.858 26 H 0.153 0.847 27 H 0.147 0.853 28 H 0.112 0.888 29 H 0.192 0.808 30 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.639 9.725 2.558 11.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.082 4.082 3 C -0.145 4.145 4 C -0.141 4.141 5 C -0.144 4.144 6 C -0.147 4.147 7 C -0.005 4.005 8 C -0.181 4.181 9 N -0.201 5.201 10 H 0.271 0.729 11 N -0.165 5.165 12 C -0.188 4.188 13 C -0.034 4.034 14 C -0.479 4.479 15 H 0.084 0.916 16 C -0.184 4.184 17 N -0.490 5.490 18 Si 0.801 3.199 19 H -0.196 1.196 20 H -0.196 1.196 21 H -0.185 1.185 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.160 0.840 26 H 0.171 0.829 27 H 0.165 0.835 28 H 0.131 0.869 29 H 0.208 0.792 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.480 8.720 3.341 10.827 hybrid contribution -0.176 0.275 -0.909 0.966 sum 5.304 8.995 2.432 10.721 Atomic orbital electron populations 1.20906 0.91681 1.03709 1.01523 1.20280 0.96348 0.92565 0.99016 1.21226 0.95044 0.97057 1.01146 1.21506 0.93772 0.98896 0.99888 1.21277 1.00828 0.91646 1.00654 1.21449 0.92861 0.98951 1.01448 1.17992 0.92463 0.89686 1.00368 1.19618 1.10498 0.94148 0.93795 1.45669 1.42133 1.15017 1.17261 0.72923 1.76310 1.11963 1.11079 1.17143 1.24915 1.02365 0.99037 0.92506 1.18349 0.96501 0.93629 0.94883 1.18760 1.25115 1.03990 1.00008 0.91597 1.26503 0.94245 0.95053 1.02601 1.69489 1.27442 1.15338 1.36691 0.85231 0.77973 0.79298 0.77376 1.19556 1.19636 1.18506 0.92095 0.91364 0.90782 0.83995 0.82947 0.83540 0.86944 0.79192 0.90800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.60 9.62 71.24 0.69 -3.92 16 2 C -0.08 -3.02 5.92 -19.54 -0.12 -3.14 16 3 C -0.13 -3.73 9.68 22.23 0.22 -3.52 16 4 C -0.12 -3.13 10.04 22.37 0.22 -2.90 16 5 C -0.13 -3.49 10.03 22.23 0.22 -3.26 16 6 C -0.13 -4.51 9.80 22.59 0.22 -4.29 16 7 C 0.00 -0.12 5.53 -20.09 -0.11 -0.23 16 8 C -0.06 -2.75 5.91 41.46 0.24 -2.51 16 9 N -0.49 -22.22 7.37 -46.68 -0.34 -22.56 16 10 H 0.43 16.31 8.96 -213.48 -1.91 14.40 16 11 N -0.34 -17.50 12.57 -56.06 -0.70 -18.20 16 12 C 0.00 -0.12 10.89 85.81 0.93 0.81 16 13 C -0.02 -1.29 4.96 -21.11 -0.10 -1.40 16 14 C -0.45 -23.95 7.63 23.32 0.18 -23.77 16 15 H 0.07 3.51 7.78 -2.91 -0.02 3.49 16 16 C 0.03 1.28 5.49 85.22 0.47 1.75 16 17 N -0.86 -45.16 10.31 21.82 0.22 -44.93 16 18 Si 0.98 39.68 29.56 68.60 2.03 41.71 16 19 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 20 H -0.27 -10.54 7.11 99.48 0.71 -9.83 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 22 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 23 H 0.07 3.14 4.56 -2.39 -0.01 3.13 16 24 H 0.07 2.39 8.08 -2.38 -0.02 2.37 16 25 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 26 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 27 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.11 3.88 8.06 -2.91 -0.02 3.85 16 29 H 0.19 10.80 5.74 -2.91 -0.02 10.78 16 30 H 0.28 13.56 8.30 -92.71 -0.77 12.79 16 Total: -1.00 -61.43 260.43 3.52 -57.91 By element: Atomic # 1 Polarization: 33.20 SS G_CDS: -0.74 Total: 32.45 kcal Atomic # 6 Polarization: -49.43 SS G_CDS: 3.06 Total: -46.37 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -0.82 Total: -85.70 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -61.43 3.52 -57.91 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260623835.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.590 kcal (2) G-P(sol) polarization free energy of solvation -61.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds