Wall clock time and date at job start Mon Mar 30 2020 02:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39190 * 119.47069 * 2 1 4 4 C 1.36757 * 120.88963 * 180.02562 * 3 2 1 5 5 C 1.39250 * 119.46937 * 359.95206 * 4 3 2 6 6 C 1.46904 * 122.39142 * 180.02562 * 5 4 3 7 7 C 1.40665 * 121.35876 * 359.95120 * 6 5 4 8 8 H 1.07999 * 120.00059 * 0.02562 * 7 6 5 9 9 C 1.40445 * 119.99871 * 179.97438 * 7 6 5 10 10 N 1.30506 * 119.99912 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00070 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.46879 * 60.00377 * 11 9 7 13 13 H 1.48503 * 109.47155 * 180.02562 * 11 9 7 14 14 H 1.48503 * 109.47086 * 300.00321 * 11 9 7 15 15 N 1.34116 * 117.28088 * 180.22856 * 6 5 4 16 16 C 1.31693 * 121.19156 * 359.48792 * 15 6 5 17 17 C 1.50705 * 118.03785 * 180.27745 * 16 15 6 18 18 N 1.31413 * 123.91632 * 0.54839 * 16 15 6 19 19 C 1.33742 * 121.28970 * 359.72574 * 18 16 15 20 20 C 1.36369 * 119.47021 * 179.97438 * 2 1 3 21 21 H 1.08996 * 109.46905 * 270.02240 * 1 2 3 22 22 H 1.08990 * 109.46963 * 30.02439 * 1 2 3 23 23 H 1.09000 * 109.46800 * 150.02774 * 1 2 3 24 24 H 1.07999 * 119.55190 * 0.02562 * 3 2 1 25 25 H 1.07999 * 120.26813 * 179.97438 * 4 3 2 26 26 H 0.97005 * 119.99946 * 179.97438 * 10 9 7 27 27 H 1.08996 * 109.47229 * 270.25430 * 17 16 15 28 28 H 1.08999 * 109.47153 * 30.25268 * 17 16 15 29 29 H 1.09000 * 109.46834 * 150.25397 * 17 16 15 30 30 H 1.07997 * 120.24455 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1918 1.2118 0.0000 4 6 3.5590 1.2457 -0.0005 5 6 4.2738 0.0507 -0.0001 6 6 5.7424 0.0121 0.0000 7 6 6.5056 1.1937 -0.0015 8 1 6.0130 2.1548 -0.0023 9 6 7.9083 1.1235 -0.0009 10 7 8.5036 -0.0379 0.0006 11 14 8.9220 2.6926 -0.0021 12 1 8.6021 3.4894 1.2095 13 1 10.3666 2.3486 -0.0018 14 1 8.6030 3.4870 -1.2155 15 7 6.3256 -1.1956 -0.0043 16 6 5.6078 -2.2997 0.0017 17 6 6.3369 -3.6186 0.0028 18 7 4.2938 -2.3200 0.0017 19 6 3.5816 -1.1880 0.0009 20 6 2.1779 -1.1872 0.0005 21 1 -0.3633 0.0004 1.0276 22 1 -0.3633 0.8897 -0.5142 23 1 -0.3633 -0.8902 -0.5134 24 1 1.6359 2.1378 0.0004 25 1 4.0801 2.1916 -0.0009 26 1 9.4724 -0.0863 0.0006 27 1 6.5127 -3.9374 -1.0246 28 1 7.2916 -3.5056 0.5165 29 1 5.7337 -4.3667 0.5172 30 1 1.6333 -2.1198 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260664573.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:56 Heat of formation + Delta-G solvation = 20.196579 kcal Electronic energy + Delta-G solvation = -14987.411765 eV Core-core repulsion = 12552.768262 eV Total energy + Delta-G solvation = -2434.643503 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.17791 -38.40564 -36.28770 -33.90923 -33.37666 -31.70269 -29.14338 -28.94037 -27.29029 -23.60436 -23.19032 -22.36228 -19.65036 -18.28853 -17.81075 -17.00581 -16.26495 -15.55273 -15.21315 -14.94868 -14.56703 -14.36624 -14.02923 -13.47131 -13.22274 -13.13252 -13.09766 -13.03868 -12.71968 -12.54046 -12.16202 -12.01758 -11.91342 -11.64906 -10.81652 -10.79101 -9.48327 -9.35017 -9.00629 -8.49639 -6.91635 0.01321 0.46015 1.27342 1.37986 1.53653 1.66646 2.11847 2.45585 2.88642 3.71674 3.83728 3.98523 4.12146 4.20852 4.26349 4.57520 4.60388 4.72963 4.85309 4.87328 4.91130 4.92636 5.00035 5.05747 5.24225 5.39644 5.50868 5.67139 5.79871 5.83212 5.96320 6.21316 6.42487 6.67682 7.18360 8.10356 8.31403 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.026448 B = 0.009533 C = 0.007043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.411176 B = 2936.389953 C = 3974.354564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.052 4.052 3 C -0.184 4.184 4 C -0.059 4.059 5 C -0.251 4.251 6 C 0.235 3.765 7 C -0.386 4.386 8 H 0.114 0.886 9 C 0.014 3.986 10 N -0.712 5.712 11 Si 1.002 2.998 12 H -0.251 1.251 13 H -0.263 1.263 14 H -0.252 1.252 15 N -0.588 5.588 16 C 0.313 3.687 17 C -0.061 4.061 18 N -0.663 5.663 19 C 0.159 3.841 20 C -0.169 4.169 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.149 0.851 25 H 0.130 0.870 26 H 0.294 0.706 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.711 4.715 0.028 6.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.054 4.054 3 C -0.203 4.203 4 C -0.078 4.078 5 C -0.258 4.258 6 C 0.105 3.895 7 C -0.418 4.418 8 H 0.132 0.868 9 C -0.214 4.214 10 N -0.331 5.331 11 Si 0.819 3.181 12 H -0.175 1.175 13 H -0.187 1.187 14 H -0.175 1.175 15 N -0.314 5.314 16 C 0.042 3.958 17 C -0.120 4.120 18 N -0.392 5.392 19 C 0.035 3.965 20 C -0.190 4.190 21 H 0.100 0.900 22 H 0.104 0.896 23 H 0.089 0.911 24 H 0.166 0.834 25 H 0.148 0.852 26 H 0.105 0.895 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.089 3.666 0.022 5.491 hybrid contribution 0.261 0.835 -0.010 0.875 sum -3.828 4.501 0.012 5.908 Atomic orbital electron populations 1.20829 0.88248 1.03708 1.03244 1.19963 0.97853 0.91974 0.95587 1.20893 0.93347 0.98234 1.07801 1.20883 0.94768 0.96435 0.95740 1.20790 0.96193 0.95883 1.12956 1.20572 0.87823 0.92999 0.88111 1.20315 0.92261 0.93288 1.35894 0.86828 1.27422 0.99237 1.01993 0.92704 1.70089 1.12267 1.28360 1.22398 0.84953 0.76584 0.75746 0.80777 1.17508 1.18676 1.17528 1.69254 1.37508 0.97103 1.27534 1.23510 0.87535 0.96298 0.88442 1.20323 0.98832 0.90169 1.02671 1.68246 1.08494 1.29610 1.32867 1.19207 0.95024 0.88719 0.93554 1.20497 0.90727 0.98679 1.09089 0.89975 0.89637 0.91109 0.83370 0.85192 0.89479 0.90509 0.90910 0.90282 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.51 9.98 71.24 0.71 -1.80 16 2 C -0.05 -1.85 5.85 -20.07 -0.12 -1.97 16 3 C -0.18 -6.59 9.61 22.15 0.21 -6.38 16 4 C -0.06 -2.54 9.48 22.17 0.21 -2.33 16 5 C -0.25 -13.22 5.91 -19.86 -0.12 -13.34 16 6 C 0.23 13.28 6.76 41.66 0.28 13.56 16 7 C -0.39 -19.54 8.91 23.40 0.21 -19.33 16 8 H 0.11 5.09 6.36 -2.91 -0.02 5.07 16 9 C 0.01 0.66 5.50 85.43 0.47 1.13 16 10 N -0.71 -35.76 11.56 21.91 0.25 -35.51 16 11 Si 1.00 33.52 29.56 68.60 2.03 35.55 16 12 H -0.25 -8.04 7.11 99.48 0.71 -7.33 16 13 H -0.26 -8.33 7.11 99.48 0.71 -7.62 16 14 H -0.25 -8.05 7.11 99.48 0.71 -7.35 16 15 N -0.59 -34.20 7.95 -177.19 -1.41 -35.61 16 16 C 0.31 17.04 7.60 138.90 1.06 18.10 16 17 C -0.06 -2.65 10.25 71.24 0.73 -1.92 16 18 N -0.66 -36.39 10.25 -181.95 -1.87 -38.26 16 19 C 0.16 8.42 6.63 40.28 0.27 8.68 16 20 C -0.17 -7.39 9.63 22.35 0.22 -7.17 16 21 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 22 H 0.08 1.68 8.08 -2.39 -0.02 1.66 16 23 H 0.07 1.60 8.07 -2.39 -0.02 1.58 16 24 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 25 H 0.13 5.04 6.58 -2.91 -0.02 5.02 16 26 H 0.29 12.99 8.29 -92.70 -0.77 12.22 16 27 H 0.08 3.04 8.14 -2.39 -0.02 3.02 16 28 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 29 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 30 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -67.86 262.81 4.29 -63.57 By element: Atomic # 1 Polarization: 21.86 SS G_CDS: 1.15 Total: 23.02 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 4.13 Total: -12.77 kcal Atomic # 7 Polarization: -106.35 SS G_CDS: -3.02 Total: -109.38 kcal Atomic # 14 Polarization: 33.52 SS G_CDS: 2.03 Total: 35.55 kcal Total: -67.86 4.29 -63.57 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260664573.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.771 kcal (2) G-P(sol) polarization free energy of solvation -67.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds