Wall clock time and date at job start Mon Mar 30 2020 03:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99805 * 2 1 4 4 H 1.48495 * 109.47383 * 240.00297 * 3 2 1 5 5 H 1.48500 * 109.47087 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46687 * 120.00046 * 3 2 1 7 7 C 1.37875 * 119.99856 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99554 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00308 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47185 * 180.02562 * 9 7 2 11 11 C 1.52994 * 109.47233 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46833 * 299.99700 * 11 10 9 13 13 O 1.42899 * 109.47373 * 300.00043 * 12 11 10 14 14 C 1.53004 * 109.46969 * 179.97438 * 12 11 10 15 15 C 1.50702 * 109.47124 * 62.81058 * 14 12 11 16 16 O 1.20826 * 119.99723 * 6.16589 * 15 14 12 17 17 O 1.34227 * 119.99875 * 186.17550 * 15 14 12 18 18 C 1.53004 * 109.46921 * 60.00216 * 12 11 10 19 19 C 1.52994 * 109.47071 * 300.00728 * 9 7 2 20 20 H 0.97001 * 120.00123 * 359.97438 * 1 2 3 21 21 H 1.09002 * 109.46794 * 60.00710 * 9 7 2 22 22 H 1.08996 * 109.47152 * 59.99789 * 10 9 7 23 23 H 1.09000 * 109.47038 * 300.00317 * 10 9 7 24 24 H 1.09001 * 109.47407 * 180.02562 * 11 10 9 25 25 H 1.08996 * 109.47616 * 59.99594 * 11 10 9 26 26 H 0.96695 * 114.00275 * 179.97438 * 13 12 11 27 27 H 1.08999 * 109.47132 * 302.81002 * 14 12 11 28 28 H 1.09001 * 109.47018 * 182.80921 * 14 12 11 29 29 H 0.96700 * 116.99772 * 179.97438 * 17 15 14 30 30 H 1.09002 * 109.47033 * 59.99601 * 18 12 11 31 31 H 1.09000 * 109.46993 * 179.97438 * 18 12 11 32 32 H 1.09007 * 109.47079 * 299.99268 * 19 9 7 33 33 H 1.08991 * 109.47665 * 59.99955 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 6 1.4803 -4.9870 -0.0012 12 6 0.6003 -5.0684 1.2478 13 8 1.4215 -4.9931 2.4149 14 6 -0.1651 -6.3932 1.2469 15 6 0.8123 -7.5382 1.3162 16 8 1.9899 -7.3185 1.4738 17 8 0.3746 -8.8020 1.2026 18 6 -0.3940 -3.9055 1.2478 19 6 0.3718 -2.5804 1.2489 20 1 -0.4850 0.8400 0.0004 21 1 0.6241 -2.5567 -0.8904 22 1 2.8719 -3.6043 0.8894 23 1 2.8719 -3.6042 -0.8905 24 1 2.1886 -5.8155 -0.0007 25 1 0.8539 -5.0446 -0.8913 26 1 0.9291 -5.0382 3.2459 27 1 -0.7533 -6.4724 0.3326 28 1 -0.8293 -6.4297 2.1105 29 1 1.0390 -9.5029 1.2529 30 1 -1.0203 -3.9630 0.3576 31 1 -1.0212 -3.9638 2.1374 32 1 0.9987 -2.5229 2.1388 33 1 -0.3365 -1.7521 1.2493 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260792639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:58 Heat of formation + Delta-G solvation = -186.716430 kcal Electronic energy + Delta-G solvation = -16704.121228 eV Core-core repulsion = 13920.903632 eV Total energy + Delta-G solvation = -2783.217595 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.49882 -39.80356 -36.99187 -36.39402 -34.25035 -32.48682 -31.38297 -29.18697 -26.12413 -23.52754 -23.00085 -21.41014 -20.50053 -18.86770 -18.39263 -17.62913 -16.88633 -16.67997 -16.46998 -15.99721 -15.37633 -14.78269 -14.34120 -14.10840 -13.90142 -13.34394 -13.06919 -12.98807 -12.78137 -12.64873 -12.53016 -12.27350 -12.16597 -11.91630 -11.57768 -11.40068 -11.21221 -11.03736 -10.53329 -10.39097 -10.25883 -8.05678 -6.18490 1.37681 1.40894 1.42147 1.49860 2.22509 2.44939 3.19912 3.52003 3.67199 3.87883 4.12693 4.45856 4.51360 4.57157 4.68325 4.75368 4.85651 4.95730 5.02914 5.11227 5.17181 5.32099 5.43004 5.55106 5.65122 5.73667 5.78193 6.11160 6.24521 6.47683 6.91861 7.07563 7.15574 7.48308 8.97783 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.062753 B = 0.006549 C = 0.006314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.084374 B = 4274.533987 C = 4433.260892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.041 0.959 9 C 0.046 3.954 10 C -0.094 4.094 11 C -0.107 4.107 12 C 0.154 3.846 13 O -0.557 6.557 14 C -0.137 4.137 15 C 0.479 3.521 16 O -0.530 6.530 17 O -0.517 6.517 18 C -0.132 4.132 19 C -0.095 4.095 20 H 0.261 0.739 21 H -0.003 1.003 22 H 0.036 0.964 23 H 0.033 0.967 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.378 0.622 27 H 0.131 0.869 28 H 0.137 0.863 29 H 0.423 0.577 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.025 0.975 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.130 -14.569 3.377 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.132 4.132 11 C -0.144 4.144 12 C 0.114 3.886 13 O -0.363 6.363 14 C -0.175 4.175 15 C 0.322 3.678 16 O -0.419 6.419 17 O -0.331 6.331 18 C -0.170 4.170 19 C -0.133 4.133 20 H 0.070 0.930 21 H 0.015 0.985 22 H 0.055 0.945 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.093 0.907 26 H 0.225 0.775 27 H 0.149 0.851 28 H 0.155 0.845 29 H 0.284 0.716 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.043 0.957 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.775 -14.039 2.942 14.832 hybrid contribution 0.640 0.685 0.309 0.987 sum -3.135 -13.354 3.251 14.097 Atomic orbital electron populations 1.69980 1.06829 1.27044 1.51468 1.25659 0.95745 1.01975 0.94903 0.85761 0.78580 0.79583 0.78614 1.19921 1.20463 1.20072 1.21588 0.92718 0.92822 1.50477 0.94094 1.18636 0.93038 0.91713 0.93838 1.21342 0.98101 0.94823 0.98887 1.21636 0.98970 0.97795 0.96026 1.20894 0.89799 0.91306 0.86641 1.86708 1.37482 1.96479 1.15641 1.22227 0.97507 0.89063 1.08653 1.23589 0.88657 0.84073 0.71517 1.90777 1.20405 1.85393 1.45314 1.84504 1.46752 1.17134 1.84741 1.22189 0.97404 0.94763 1.02629 1.21275 0.98506 0.96045 0.97493 0.93019 0.98482 0.94490 0.94780 0.91746 0.90729 0.77479 0.85142 0.84469 0.71554 0.91296 0.90287 0.95662 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.05 11.32 21.45 0.24 -52.81 16 2 C 0.02 0.89 5.30 84.65 0.45 1.34 16 3 Si 0.95 44.89 29.54 68.60 2.03 46.92 16 4 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 7 C -0.54 -31.23 8.56 25.60 0.22 -31.01 16 8 H 0.04 2.39 7.74 -2.91 -0.02 2.37 16 9 C 0.05 2.39 2.10 -11.54 -0.02 2.37 16 10 C -0.09 -4.31 4.99 30.59 0.15 -4.16 16 11 C -0.11 -3.94 4.66 30.59 0.14 -3.79 16 12 C 0.15 4.80 0.56 -10.79 -0.01 4.79 16 13 O -0.56 -18.93 10.19 -129.22 -1.32 -20.24 16 14 C -0.14 -2.91 5.05 29.85 0.15 -2.76 16 15 C 0.48 11.44 7.81 71.24 0.56 12.00 16 16 O -0.53 -17.31 13.96 28.59 0.40 -16.91 16 17 O -0.52 -8.83 13.42 -51.39 -0.69 -9.52 16 18 C -0.13 -4.47 4.92 30.61 0.15 -4.32 16 19 C -0.10 -4.47 4.83 30.61 0.15 -4.32 16 20 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 21 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 22 H 0.04 1.82 7.68 -2.39 -0.02 1.80 16 23 H 0.03 1.55 8.14 -2.39 -0.02 1.54 16 24 H 0.06 2.41 5.99 -2.39 -0.01 2.40 16 25 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 26 H 0.38 9.40 9.05 -74.06 -0.67 8.73 16 27 H 0.13 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.42 3.93 9.10 -74.06 -0.67 3.26 16 30 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 32 H 0.02 1.22 7.68 -2.38 -0.02 1.20 16 33 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 Total: -1.00 -71.90 267.17 2.38 -69.52 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -0.22 Total: 12.91 kcal Atomic # 6 Polarization: -31.81 SS G_CDS: 1.94 Total: -29.87 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: 0.24 Total: -52.81 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -1.61 Total: -46.67 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -71.90 2.38 -69.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.195 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds