Wall clock time and date at job start Mon Mar 30 2020 03:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.36427 * 126.66669 * 2 1 4 4 H 0.97000 * 126.28506 * 359.96261 * 3 2 1 5 5 C 1.35791 * 107.42945 * 179.97438 * 3 2 1 6 6 N 1.30297 * 109.01066 * 0.26867 * 5 3 2 7 7 C 1.34993 * 109.19679 * 359.56905 * 6 5 3 8 8 C 1.47684 * 126.15847 * 180.17742 * 7 6 5 9 9 C 1.39320 * 120.35060 * 222.97601 * 8 7 6 10 10 C 1.37960 * 119.97413 * 179.71532 * 9 8 7 11 11 C 1.38998 * 120.69264 * 0.55711 * 10 9 8 12 12 C 1.36375 * 120.71421 * 359.72312 * 11 10 9 13 13 C 1.40770 * 119.99301 * 359.97438 * 12 11 10 14 14 C 1.40821 * 120.34103 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00224 * 207.32160 * 14 13 12 16 16 C 1.39988 * 119.99776 * 27.32258 * 14 13 12 17 17 N 1.30832 * 120.00249 * 12.90260 * 16 14 13 18 18 Si 1.86798 * 119.99782 * 192.89823 * 16 14 13 19 19 H 1.48495 * 109.47061 * 90.00367 * 18 16 14 20 20 H 1.48510 * 109.47103 * 210.00164 * 18 16 14 21 21 H 1.48496 * 109.47225 * 329.99962 * 18 16 14 22 22 H 1.09000 * 109.47236 * 87.02111 * 1 2 3 23 23 H 1.09002 * 109.47305 * 207.02619 * 1 2 3 24 24 H 1.09001 * 109.46818 * 327.01854 * 1 2 3 25 25 H 1.07994 * 125.49772 * 179.97438 * 5 3 2 26 26 H 1.07995 * 120.00812 * 359.97438 * 9 8 7 27 27 H 1.08003 * 119.65128 * 180.27411 * 10 9 8 28 28 H 1.08004 * 119.64589 * 179.69274 * 11 10 9 29 29 H 1.08004 * 120.00805 * 180.02562 * 12 11 10 30 30 H 0.96998 * 120.00184 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3216 1.0943 0.0000 4 1 2.0373 2.0217 -0.0005 5 6 3.6037 0.6469 0.0006 6 7 3.5986 -0.6560 -0.0049 7 6 2.3220 -1.0949 0.0005 8 6 1.8856 -2.5058 0.0007 9 6 0.8335 -2.9174 -0.8145 10 6 0.4360 -4.2385 -0.8125 11 6 1.0675 -5.1681 0.0054 12 6 2.0966 -4.7949 0.8188 13 6 2.5303 -3.4558 0.8355 14 6 3.5919 -3.0623 1.6729 15 1 3.6492 -2.0447 2.0301 16 6 4.5729 -3.9901 2.0423 17 7 4.6534 -5.1391 1.4216 18 14 5.7669 -3.5878 3.4212 19 1 5.2005 -4.0449 4.7156 20 1 7.0586 -4.2781 3.1748 21 1 5.9912 -2.1206 3.4695 22 1 -0.3634 0.0534 -1.0263 23 1 -0.3634 -0.9154 0.4670 24 1 -0.3633 0.8621 0.5594 25 1 4.4855 1.2704 0.0003 26 1 0.3320 -2.2033 -1.4509 27 1 -0.3773 -4.5527 -1.4499 28 1 0.7393 -6.1971 -0.0028 29 1 2.5794 -5.5268 1.4494 30 1 5.3334 -5.7818 1.6773 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260799941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:36 Heat of formation + Delta-G solvation = 67.890739 kcal Electronic energy + Delta-G solvation = -15188.338903 eV Core-core repulsion = 12755.763574 eV Total energy + Delta-G solvation = -2432.575329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.12618 -37.26160 -33.54808 -32.18816 -31.66651 -29.50457 -28.62871 -25.88834 -24.85943 -21.40495 -21.16361 -20.31026 -18.63345 -17.24269 -16.86558 -15.20561 -14.48223 -14.45532 -14.01178 -13.56528 -12.95099 -12.62209 -12.48181 -12.33439 -11.93768 -11.82107 -11.48902 -11.05917 -10.96373 -10.57620 -10.31532 -9.61578 -9.49635 -9.09448 -9.05681 -8.96777 -7.86888 -7.24647 -6.88939 -6.56946 -4.15072 2.50078 2.92179 3.10460 3.15775 3.21465 3.35745 3.72263 4.06170 4.17330 4.80321 5.29771 5.51779 5.60508 5.83317 5.93150 6.12951 6.29858 6.33778 6.41728 6.55204 6.76332 6.91885 7.21808 7.35788 7.48917 7.53624 7.72961 7.94643 8.12787 8.21500 8.24106 8.43055 8.78875 8.95078 9.05361 9.13879 10.32751 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.021039 B = 0.012202 C = 0.008223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1330.538766 B = 2294.096869 C = 3404.073862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.060 4.060 3 N -0.580 5.580 4 H 0.407 0.593 5 C 0.155 3.845 6 N -0.456 5.456 7 C 0.111 3.889 8 C -0.144 4.144 9 C -0.072 4.072 10 C -0.249 4.249 11 C -0.104 4.104 12 C -0.160 4.160 13 C 0.131 3.869 14 C -0.419 4.419 15 H 0.081 0.919 16 C 0.073 3.927 17 N -0.796 5.796 18 Si 0.909 3.091 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.262 1.262 22 H 0.061 0.939 23 H 0.084 0.916 24 H 0.051 0.949 25 H 0.197 0.803 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.120 0.880 30 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.871 8.638 -0.380 9.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.173 4.173 3 N -0.186 5.186 4 H 0.243 0.757 5 C -0.128 4.128 6 N -0.174 5.174 7 C -0.017 4.017 8 C -0.146 4.146 9 C -0.091 4.091 10 C -0.269 4.269 11 C -0.122 4.122 12 C -0.179 4.179 13 C 0.128 3.872 14 C -0.448 4.448 15 H 0.099 0.901 16 C -0.144 4.144 17 N -0.422 5.422 18 Si 0.734 3.266 19 H -0.196 1.196 20 H -0.204 1.204 21 H -0.186 1.186 22 H 0.079 0.921 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.213 0.787 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.103 0.897 29 H 0.137 0.863 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -2.975 7.866 -0.388 8.419 hybrid contribution -0.012 1.183 0.493 1.281 sum -2.988 9.049 0.105 9.530 Atomic orbital electron populations 1.20107 0.87865 1.02872 1.01442 1.21221 0.93823 0.86985 1.15282 1.43113 1.07642 1.08326 1.59480 0.75694 1.25030 0.86723 0.92602 1.08439 1.70606 1.22797 1.07228 1.16752 1.19080 0.87211 0.92551 1.02884 1.17726 1.02848 0.89709 1.04359 1.20480 0.96202 0.94893 0.97549 1.20181 1.05420 0.93823 1.07437 1.20452 0.97112 0.96969 0.97699 1.21089 0.97390 0.97385 1.02024 1.17555 0.90407 0.90562 0.88723 1.19496 1.05014 0.97028 1.23272 0.90131 1.25933 0.98220 0.94200 0.96045 1.69824 1.30483 1.07029 1.34880 0.86291 0.79254 0.79910 0.81128 1.19590 1.20400 1.18601 0.92070 0.89684 0.92960 0.78680 0.89451 0.89629 0.89699 0.86259 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 9.12 36.00 0.33 -0.64 16 2 C -0.06 -1.12 7.25 -81.18 -0.59 -1.71 16 3 N -0.58 -8.89 6.15 -9.86 -0.06 -8.95 16 4 H 0.41 4.35 8.96 -40.82 -0.37 3.98 16 5 C 0.15 2.71 13.04 -89.86 -1.17 1.54 16 6 N -0.46 -10.65 9.92 -11.06 -0.11 -10.76 16 7 C 0.11 2.59 5.84 -83.25 -0.49 2.11 16 8 C -0.14 -3.68 5.66 -104.22 -0.59 -4.27 16 9 C -0.07 -1.67 8.53 -39.28 -0.33 -2.01 16 10 C -0.25 -5.73 10.03 -39.40 -0.40 -6.12 16 11 C -0.10 -2.51 9.96 -39.97 -0.40 -2.90 16 12 C -0.16 -4.28 8.61 -39.30 -0.34 -4.62 16 13 C 0.13 3.64 5.58 -106.54 -0.59 3.04 16 14 C -0.42 -11.66 7.99 -37.95 -0.30 -11.97 16 15 H 0.08 2.28 6.78 -52.49 -0.36 1.92 16 16 C 0.07 1.92 5.22 -17.32 -0.09 1.83 16 17 N -0.80 -21.40 10.85 55.55 0.60 -20.80 16 18 Si 0.91 19.88 29.58 -169.99 -5.03 14.85 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 21 H -0.26 -5.76 7.11 56.52 0.40 -5.36 16 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.08 1.40 7.24 -51.93 -0.38 1.02 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.20 2.52 8.06 -52.49 -0.42 2.09 16 26 H 0.09 1.79 7.28 -52.49 -0.38 1.41 16 27 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 28 H 0.08 1.83 8.06 -52.48 -0.42 1.41 16 29 H 0.12 3.27 6.18 -52.48 -0.32 2.95 16 30 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 LS Contribution 259.83 15.07 3.92 3.92 Total: -1.00 -31.84 259.83 -8.69 -40.53 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -3.05 Total: 6.92 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -4.96 Total: -25.71 kcal Atomic # 7 Polarization: -40.94 SS G_CDS: 0.43 Total: -40.51 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.03 Total: 14.85 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.84 -8.69 -40.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260799941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.423 kcal (2) G-P(sol) polarization free energy of solvation -31.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds