Wall clock time and date at job start Mon Mar 30 2020 03:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39855 * 125.78674 * 2 1 4 4 C 1.30208 * 109.66730 * 179.97438 * 3 2 1 5 5 C 1.41774 * 108.49842 * 359.97438 * 4 3 2 6 6 C 1.40891 * 126.62847 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99838 * 180.02562 * 6 5 4 8 8 C 1.39870 * 119.99966 * 0.02562 * 6 5 4 9 9 N 1.30934 * 120.00130 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47064 * 90.00085 * 10 8 6 12 12 H 1.48502 * 109.47064 * 209.99446 * 10 8 6 13 13 H 1.48496 * 109.47202 * 329.99727 * 10 8 6 14 14 C 1.36223 * 125.79182 * 179.97438 * 2 1 3 15 15 C 1.47192 * 126.66426 * 0.02562 * 14 2 1 16 16 C 1.39957 * 120.17888 * 134.69947 * 15 14 2 17 17 C 1.37842 * 119.81781 * 179.76728 * 16 15 14 18 18 C 1.38456 * 120.17975 * 0.48554 * 17 16 15 19 19 C 1.38453 * 120.35819 * 359.78941 * 18 17 16 20 20 C 1.37835 * 120.18140 * 359.95238 * 19 18 17 21 21 H 1.09003 * 109.46962 * 89.97723 * 1 2 3 22 22 H 1.09000 * 109.47281 * 209.97418 * 1 2 3 23 23 H 1.09005 * 109.47318 * 329.97978 * 1 2 3 24 24 H 1.08001 * 125.75287 * 179.97438 * 4 3 2 25 25 H 0.97001 * 120.00402 * 180.02562 * 9 8 6 26 26 H 1.08000 * 120.08781 * 0.02562 * 16 15 14 27 27 H 1.08000 * 119.91216 * 180.25221 * 17 16 15 28 28 H 1.07998 * 119.82156 * 179.76028 * 18 17 16 29 29 H 1.08003 * 119.90535 * 179.97438 * 19 18 17 30 30 H 1.08004 * 120.09411 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2828 1.1345 0.0000 4 6 3.5337 0.7730 0.0005 5 6 3.5926 -0.6435 0.0015 6 6 4.7572 -1.4365 0.0019 7 1 4.6771 -2.5135 0.0022 8 6 6.0170 -0.8288 0.0017 9 7 6.1140 0.4770 0.0008 10 14 7.5610 -1.8802 0.0029 11 1 7.9705 -2.1598 -1.3969 12 1 8.6525 -1.1559 0.7025 13 1 7.2876 -3.1604 0.7038 14 6 2.2617 -1.1050 0.0005 15 6 1.8180 -2.5084 0.0006 16 6 2.4177 -3.4360 -0.8590 17 6 1.9996 -4.7494 -0.8493 18 6 0.9826 -5.1499 0.0005 19 6 0.3803 -4.2373 0.8498 20 6 0.7903 -2.9214 0.8562 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3634 0.8898 0.5142 24 1 4.3833 1.4398 0.0003 25 1 6.9877 0.8984 0.0003 26 1 3.2086 -3.1243 -1.5251 27 1 2.4641 -5.4673 -1.5091 28 1 0.6570 -6.1797 0.0006 29 1 -0.4127 -4.5576 1.5094 30 1 0.3198 -2.2108 1.5196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260809833.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:18 Heat of formation + Delta-G solvation = 91.302408 kcal Electronic energy + Delta-G solvation = -15078.985884 eV Core-core repulsion = 12647.425761 eV Total energy + Delta-G solvation = -2431.560123 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.41632 -37.87274 -33.85776 -31.88026 -31.07009 -30.18536 -28.15752 -26.21902 -24.15478 -21.98885 -21.84823 -19.48612 -18.80679 -17.25808 -15.92257 -15.33485 -14.81012 -14.35027 -14.03559 -13.70735 -13.08071 -12.91699 -12.72581 -12.31496 -11.88565 -11.62404 -11.34285 -11.19397 -11.13148 -11.02160 -10.44286 -10.21978 -10.06315 -9.38410 -8.97581 -8.48925 -8.33449 -7.50900 -7.14443 -6.64512 -4.08313 1.79758 2.03528 2.98138 3.12042 3.16847 3.36309 3.93121 4.00492 4.26336 4.54334 5.40957 5.46125 5.48320 5.58965 5.59256 5.84323 5.90823 6.03909 6.11752 6.22044 6.59309 6.66369 6.76631 7.01886 7.10258 7.15391 7.21609 7.47862 7.60421 7.67352 8.01574 8.45707 8.57392 8.90769 8.97371 9.41580 10.32290 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.010905 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.715247 B = 2566.972031 C = 3683.029166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.118 3.882 2 N -0.399 5.399 3 N -0.318 5.318 4 C 0.022 3.978 5 C 0.019 3.981 6 C -0.419 4.419 7 H 0.078 0.922 8 C 0.067 3.933 9 N -0.823 5.823 10 Si 0.917 3.083 11 H -0.271 1.271 12 H -0.278 1.278 13 H -0.263 1.263 14 C -0.091 4.091 15 C 0.051 3.949 16 C -0.114 4.114 17 C -0.116 4.116 18 C -0.157 4.157 19 C -0.118 4.118 20 C -0.145 4.145 21 H 0.047 0.953 22 H 0.071 0.929 23 H 0.067 0.933 24 H 0.205 0.795 25 H 0.279 0.721 26 H 0.127 0.873 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.508 -6.080 -0.162 8.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 N -0.191 5.191 3 N -0.138 5.138 4 C -0.166 4.166 5 C 0.010 3.990 6 C -0.452 4.452 7 H 0.096 0.904 8 C -0.146 4.146 9 N -0.453 5.453 10 Si 0.742 3.258 11 H -0.196 1.196 12 H -0.203 1.203 13 H -0.187 1.187 14 C -0.208 4.208 15 C 0.048 3.952 16 C -0.133 4.133 17 C -0.135 4.135 18 C -0.176 4.176 19 C -0.136 4.136 20 C -0.164 4.164 21 H 0.066 0.934 22 H 0.090 0.910 23 H 0.086 0.914 24 H 0.221 0.779 25 H 0.090 0.910 26 H 0.145 0.855 27 H 0.131 0.869 28 H 0.127 0.873 29 H 0.128 0.872 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.234 -4.928 -0.156 7.948 hybrid contribution 1.211 -1.109 0.083 1.644 sum -5.023 -6.037 -0.073 7.854 Atomic orbital electron populations 1.21420 0.77756 1.02262 1.01057 1.47518 1.03789 1.02855 1.64951 1.76389 1.03852 1.09432 1.24159 1.25036 0.93035 0.96748 1.01820 1.18159 0.90200 0.92049 0.98638 1.18901 0.88962 0.94290 1.43047 0.90381 1.25819 1.00858 0.95112 0.92839 1.69417 1.26149 1.09918 1.39789 0.86152 0.80143 0.80436 0.79047 1.19601 1.20341 1.18742 1.19174 0.90629 0.85625 1.25365 1.17958 0.93306 0.90714 0.93191 1.21361 1.00557 0.92611 0.98746 1.20968 0.97409 0.95857 0.99225 1.20934 0.98858 0.98778 0.98997 1.20847 0.99992 0.93472 0.99264 1.21258 0.99539 0.95654 0.99935 0.93404 0.91018 0.91422 0.77893 0.91014 0.85524 0.86897 0.87307 0.87189 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.12 11.25 59.85 0.67 2.80 16 2 N -0.40 -9.43 4.04 -63.29 -0.26 -9.69 16 3 N -0.32 -8.18 12.44 30.93 0.38 -7.80 16 4 C 0.02 0.60 10.89 -16.89 -0.18 0.42 16 5 C 0.02 0.52 5.93 -106.55 -0.63 -0.11 16 6 C -0.42 -11.05 8.62 -37.97 -0.33 -11.37 16 7 H 0.08 2.00 6.48 -52.49 -0.34 1.66 16 8 C 0.07 1.68 5.49 -17.32 -0.10 1.58 16 9 N -0.82 -20.84 10.31 55.54 0.57 -20.27 16 10 Si 0.92 18.91 29.56 -169.99 -5.02 13.89 16 11 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 12 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 13 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 14 C -0.09 -2.25 6.56 -81.29 -0.53 -2.78 16 15 C 0.05 1.09 5.51 -104.97 -0.58 0.51 16 16 C -0.11 -2.28 8.50 -39.08 -0.33 -2.62 16 17 C -0.12 -1.97 10.03 -39.65 -0.40 -2.36 16 18 C -0.16 -2.45 10.04 -39.42 -0.40 -2.85 16 19 C -0.12 -1.89 10.03 -39.65 -0.40 -2.28 16 20 C -0.14 -2.70 8.54 -39.08 -0.33 -3.03 16 21 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 22 H 0.07 1.15 5.13 -51.93 -0.27 0.89 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 24 H 0.21 5.47 5.74 -52.49 -0.30 5.17 16 25 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 26 H 0.13 2.64 7.38 -52.49 -0.39 2.26 16 27 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 28 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 29 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 30 H 0.11 1.97 6.56 -52.48 -0.34 1.63 16 LS Contribution 259.11 15.07 3.90 3.90 Total: -1.00 -28.67 259.11 -6.84 -35.51 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -2.89 Total: 6.56 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: -3.53 Total: -22.11 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: 0.70 Total: -37.75 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.02 Total: 13.89 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -28.67 -6.84 -35.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260809833.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.812 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds