Wall clock time and date at job start Mon Mar 30 2020 03:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39855 * 125.78674 * 2 1 4 4 C 1.30208 * 109.66730 * 179.97438 * 3 2 1 5 5 C 1.41774 * 108.49842 * 359.97438 * 4 3 2 6 6 C 1.40891 * 126.62847 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99838 * 180.02562 * 6 5 4 8 8 C 1.39870 * 119.99966 * 0.02562 * 6 5 4 9 9 N 1.30934 * 120.00130 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 119.99743 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47064 * 90.00085 * 10 8 6 12 12 H 1.48502 * 109.47064 * 209.99446 * 10 8 6 13 13 H 1.48496 * 109.47202 * 329.99727 * 10 8 6 14 14 C 1.36223 * 125.79182 * 179.97438 * 2 1 3 15 15 C 1.47192 * 126.66426 * 0.02562 * 14 2 1 16 16 C 1.39957 * 120.17888 * 134.69947 * 15 14 2 17 17 C 1.37842 * 119.81781 * 179.76728 * 16 15 14 18 18 C 1.38456 * 120.17975 * 0.48554 * 17 16 15 19 19 C 1.38453 * 120.35819 * 359.78941 * 18 17 16 20 20 C 1.37835 * 120.18140 * 359.95238 * 19 18 17 21 21 H 1.09003 * 109.46962 * 89.97723 * 1 2 3 22 22 H 1.09000 * 109.47281 * 209.97418 * 1 2 3 23 23 H 1.09005 * 109.47318 * 329.97978 * 1 2 3 24 24 H 1.08001 * 125.75287 * 179.97438 * 4 3 2 25 25 H 0.97001 * 120.00402 * 180.02562 * 9 8 6 26 26 H 1.08000 * 120.08781 * 0.02562 * 16 15 14 27 27 H 1.08000 * 119.91216 * 180.25221 * 17 16 15 28 28 H 1.07998 * 119.82156 * 179.76028 * 18 17 16 29 29 H 1.08003 * 119.90535 * 179.97438 * 19 18 17 30 30 H 1.08004 * 120.09411 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2828 1.1345 0.0000 4 6 3.5337 0.7730 0.0005 5 6 3.5926 -0.6435 0.0015 6 6 4.7572 -1.4365 0.0019 7 1 4.6771 -2.5135 0.0022 8 6 6.0170 -0.8288 0.0017 9 7 6.1140 0.4770 0.0008 10 14 7.5610 -1.8802 0.0029 11 1 7.9705 -2.1598 -1.3969 12 1 8.6525 -1.1559 0.7025 13 1 7.2876 -3.1604 0.7038 14 6 2.2617 -1.1050 0.0005 15 6 1.8180 -2.5084 0.0006 16 6 2.4177 -3.4360 -0.8590 17 6 1.9996 -4.7494 -0.8493 18 6 0.9826 -5.1499 0.0005 19 6 0.3803 -4.2373 0.8498 20 6 0.7903 -2.9214 0.8562 21 1 -0.3633 0.0004 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3634 0.8898 0.5142 24 1 4.3833 1.4398 0.0003 25 1 6.9877 0.8984 0.0003 26 1 3.2086 -3.1243 -1.5251 27 1 2.4641 -5.4673 -1.5091 28 1 0.6570 -6.1797 0.0006 29 1 -0.4127 -4.5576 1.5094 30 1 0.3198 -2.2108 1.5196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260809833.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:17 Heat of formation + Delta-G solvation = 75.010627 kcal Electronic energy + Delta-G solvation = -15079.692348 eV Core-core repulsion = 12647.425761 eV Total energy + Delta-G solvation = -2432.266588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.23078 -39.36259 -35.68294 -33.59252 -32.69744 -31.60480 -29.89900 -27.93112 -25.96553 -23.52840 -23.27030 -21.37836 -20.50768 -19.06964 -17.49899 -16.85876 -16.50497 -15.97804 -15.61849 -15.28253 -14.65320 -14.60603 -14.23254 -13.82871 -13.38201 -13.22322 -13.08029 -12.84790 -12.79536 -12.74261 -11.93556 -11.79733 -11.68037 -11.19128 -10.88988 -10.14046 -9.71997 -9.30718 -8.95562 -8.45296 -6.01326 0.30752 0.64044 1.32922 1.42789 1.55553 1.58805 2.22683 2.29521 2.34071 3.06801 3.52487 4.02059 4.16771 4.18119 4.25232 4.40864 4.48839 4.64516 4.72396 4.81855 4.89659 5.10123 5.24649 5.31852 5.48478 5.59086 5.69907 5.74009 5.94435 6.06670 6.25264 6.54443 6.72427 7.03424 7.07940 7.47260 8.54122 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.022012 B = 0.010905 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.715247 B = 2566.972031 C = 3683.029166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.393 5.393 3 N -0.339 5.339 4 C -0.006 4.006 5 C -0.029 4.029 6 C -0.452 4.452 7 H 0.074 0.926 8 C 0.023 3.977 9 N -0.856 5.856 10 Si 0.986 3.014 11 H -0.264 1.264 12 H -0.270 1.270 13 H -0.263 1.263 14 C -0.077 4.077 15 C 0.009 3.991 16 C -0.128 4.128 17 C -0.117 4.117 18 C -0.136 4.136 19 C -0.112 4.112 20 C -0.144 4.144 21 H 0.064 0.936 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.193 0.807 25 H 0.283 0.717 26 H 0.104 0.896 27 H 0.142 0.858 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 -9.249 0.247 11.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.184 5.184 3 N -0.162 5.162 4 C -0.192 4.192 5 C -0.038 4.038 6 C -0.485 4.485 7 H 0.092 0.908 8 C -0.187 4.187 9 N -0.486 5.486 10 Si 0.808 3.192 11 H -0.189 1.189 12 H -0.195 1.195 13 H -0.187 1.187 14 C -0.197 4.197 15 C 0.007 3.993 16 C -0.148 4.148 17 C -0.135 4.135 18 C -0.154 4.154 19 C -0.130 4.130 20 C -0.163 4.163 21 H 0.082 0.918 22 H 0.113 0.887 23 H 0.104 0.896 24 H 0.209 0.791 25 H 0.094 0.906 26 H 0.122 0.878 27 H 0.160 0.840 28 H 0.170 0.830 29 H 0.169 0.831 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -8.154 -8.076 0.250 11.479 hybrid contribution 1.453 -0.320 -0.057 1.489 sum -6.700 -8.396 0.193 10.744 Atomic orbital electron populations 1.21849 0.74517 1.04354 1.02773 1.48053 1.05752 1.02221 1.62400 1.76297 1.03737 1.10370 1.25817 1.24886 0.93318 0.97086 1.03877 1.18545 0.91779 0.92330 1.01191 1.18999 0.89899 0.94034 1.45598 0.90824 1.26632 1.03442 0.96295 0.92290 1.69493 1.26924 1.11192 1.41029 0.85120 0.76315 0.78566 0.79184 1.18936 1.19512 1.18656 1.19800 0.90344 0.87504 1.22064 1.18077 0.95889 0.89316 0.95982 1.21343 1.00346 0.94201 0.98900 1.21308 0.97676 0.94679 0.99830 1.21495 0.96683 1.00722 0.96510 1.21307 1.00327 0.92029 0.99288 1.21397 0.98275 0.97419 0.99198 0.91751 0.88716 0.89552 0.79068 0.90590 0.87829 0.84038 0.82969 0.83126 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.64 11.25 127.77 1.44 5.07 16 2 N -0.39 -18.77 4.04 -354.14 -1.43 -20.20 16 3 N -0.34 -18.15 12.44 -56.07 -0.70 -18.85 16 4 C -0.01 -0.33 10.89 85.81 0.93 0.61 16 5 C -0.03 -1.64 5.93 -21.11 -0.13 -1.76 16 6 C -0.45 -25.12 8.62 23.32 0.20 -24.91 16 7 H 0.07 3.96 6.48 -2.91 -0.02 3.95 16 8 C 0.02 1.20 5.49 85.22 0.47 1.66 16 9 N -0.86 -45.83 10.31 21.82 0.22 -45.61 16 10 Si 0.99 39.99 29.56 68.60 2.03 42.02 16 11 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 12 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 13 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 14 C -0.08 -3.88 6.56 41.46 0.27 -3.60 16 15 C 0.01 0.40 5.51 -20.09 -0.11 0.29 16 16 C -0.13 -5.09 8.50 22.59 0.19 -4.90 16 17 C -0.12 -3.54 10.03 22.23 0.22 -3.32 16 18 C -0.14 -3.46 10.04 22.37 0.22 -3.24 16 19 C -0.11 -2.99 10.03 22.23 0.22 -2.77 16 20 C -0.14 -4.94 8.54 22.59 0.19 -4.75 16 21 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 22 H 0.09 2.80 5.13 -2.39 -0.01 2.79 16 23 H 0.09 2.64 8.14 -2.38 -0.02 2.62 16 24 H 0.19 11.16 5.74 -2.91 -0.02 11.15 16 25 H 0.28 13.80 8.30 -92.71 -0.77 13.03 16 26 H 0.10 4.50 7.38 -2.91 -0.02 4.48 16 27 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 28 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 29 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.12 3.82 6.56 -2.91 -0.02 3.81 16 Total: -1.00 -66.04 259.11 5.41 -60.63 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 1.15 Total: 23.62 kcal Atomic # 6 Polarization: -45.75 SS G_CDS: 4.13 Total: -41.62 kcal Atomic # 7 Polarization: -82.75 SS G_CDS: -1.90 Total: -84.65 kcal Atomic # 14 Polarization: 39.99 SS G_CDS: 2.03 Total: 42.02 kcal Total: -66.04 5.41 -60.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260809833.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.637 kcal (2) G-P(sol) polarization free energy of solvation -66.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds