Wall clock time and date at job start Mon Mar 30 2020 02:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30815 * 1 3 3 Si 1.86804 * 120.00007 * 2 1 4 4 H 1.48500 * 109.47152 * 275.44865 * 3 2 1 5 5 H 1.48501 * 109.46833 * 35.44563 * 3 2 1 6 6 H 1.48496 * 109.47098 * 155.44798 * 3 2 1 7 7 C 1.39957 * 120.00262 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00108 * 342.19598 * 7 2 1 9 9 C 1.40513 * 120.00555 * 162.19194 * 7 2 1 10 10 C 1.46850 * 120.76070 * 330.13888 * 9 7 2 11 11 C 1.34153 * 119.39342 * 180.23520 * 10 9 7 12 12 N 1.37138 * 121.20500 * 0.07184 * 11 10 9 13 13 C 1.36807 * 131.61185 * 179.97438 * 12 11 10 14 14 C 1.35822 * 107.22120 * 179.97438 * 13 12 11 15 15 C 1.50708 * 125.65950 * 179.97438 * 14 13 12 16 16 C 1.52997 * 117.49802 * 343.64057 * 15 14 13 17 17 C 1.52996 * 117.49516 * 275.01885 * 15 14 13 18 18 N 1.32858 * 108.68118 * 0.02562 * 14 13 12 19 19 C 1.33240 * 109.18346 * 359.97438 * 18 14 13 20 20 C 1.39787 * 131.54961 * 179.97438 * 19 18 14 21 21 H 0.97000 * 120.00289 * 0.02562 * 1 2 3 22 22 H 1.07991 * 120.30562 * 0.23305 * 10 9 7 23 23 H 1.08005 * 119.39344 * 179.97438 * 11 10 9 24 24 H 1.07996 * 126.38514 * 359.94709 * 13 12 11 25 25 H 1.08995 * 115.55032 * 129.35303 * 15 14 13 26 26 H 1.09001 * 117.49771 * 359.97438 * 16 15 14 27 27 H 1.09000 * 117.50134 * 145.01778 * 16 15 14 28 28 H 1.08999 * 117.49799 * 214.97714 * 17 15 14 29 29 H 1.09003 * 117.50353 * 359.97438 * 17 15 14 30 30 H 1.07997 * 120.49684 * 0.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.3745 2.1129 -1.3937 5 1 1.5018 2.6167 0.8120 6 1 3.5925 1.4097 0.5817 7 6 2.0080 -1.2120 0.0005 8 1 1.5068 -2.1249 0.2869 9 6 3.3626 -1.2414 -0.3716 10 6 3.8977 -0.2723 -1.3365 11 6 5.1943 -0.3283 -1.6758 12 7 6.0290 -1.2750 -1.1392 13 6 7.3606 -1.5246 -1.3290 14 6 7.6865 -2.5851 -0.5455 15 6 9.0540 -3.2091 -0.4359 16 6 10.0725 -2.8750 -1.5276 17 6 9.4343 -4.2646 -1.4761 18 7 6.5996 -2.9819 0.1074 19 6 5.5746 -2.2021 -0.2342 20 6 4.2351 -2.2036 0.1653 21 1 -0.4850 0.8400 -0.0004 22 1 3.2532 0.4786 -1.7690 23 1 5.5878 0.3842 -2.3858 24 1 8.0280 -0.9803 -1.9806 25 1 9.4291 -3.3442 0.5785 26 1 9.7534 -2.2043 -2.3254 27 1 11.1181 -2.7900 -1.2316 28 1 10.0600 -5.0938 -1.1462 29 1 8.6953 -4.5081 -2.2395 30 1 3.8762 -2.9324 0.8768 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261117056.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:10 Heat of formation + Delta-G solvation = 83.569475 kcal Electronic energy + Delta-G solvation = -14780.984816 eV Core-core repulsion = 12349.089368 eV Total energy + Delta-G solvation = -2431.895448 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.16069 -38.69666 -37.29471 -35.55069 -33.95567 -30.94849 -30.25038 -27.24100 -24.78966 -23.37805 -23.25894 -22.69862 -20.49843 -19.65153 -18.44735 -17.39062 -16.96078 -16.60981 -16.06735 -15.46993 -15.23082 -15.11399 -14.77802 -14.39818 -13.50599 -13.01773 -12.98181 -12.72315 -12.53398 -12.28655 -12.16415 -11.79285 -11.51953 -11.33170 -11.26073 -10.88638 -10.62258 -9.36825 -9.06042 -8.71494 -6.57919 0.19829 0.61333 1.21950 1.39729 1.47055 1.98564 2.04915 2.08859 2.43627 2.99600 3.22253 3.56346 3.72798 4.01563 4.04898 4.20939 4.35082 4.36829 4.51904 4.69592 4.70787 4.82988 4.93492 5.04269 5.17114 5.26087 5.33015 5.45057 5.56281 5.87084 6.03813 6.07535 6.37641 6.56723 6.65159 7.35668 8.01148 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.060808 B = 0.006553 C = 0.006159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.351518 B = 4271.780773 C = 4545.275963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.052 3.948 3 Si 0.962 3.038 4 H -0.227 1.227 5 H -0.269 1.269 6 H -0.260 1.260 7 C -0.453 4.453 8 H 0.062 0.938 9 C 0.096 3.904 10 C -0.198 4.198 11 C 0.071 3.929 12 N -0.398 5.398 13 C -0.148 4.148 14 C 0.068 3.932 15 C -0.097 4.097 16 C -0.142 4.142 17 C -0.168 4.168 18 N -0.586 5.586 19 C 0.271 3.729 20 C -0.309 4.309 21 H 0.304 0.696 22 H 0.156 0.844 23 H 0.199 0.801 24 H 0.203 0.797 25 H 0.111 0.889 26 H 0.101 0.899 27 H 0.125 0.875 28 H 0.115 0.885 29 H 0.077 0.923 30 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.015 4.348 -6.006 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.168 4.168 3 Si 0.783 3.217 4 H -0.151 1.151 5 H -0.195 1.195 6 H -0.184 1.184 7 C -0.483 4.483 8 H 0.080 0.920 9 C 0.089 3.911 10 C -0.219 4.219 11 C -0.049 4.049 12 N -0.073 5.073 13 C -0.276 4.276 14 C -0.064 4.064 15 C -0.116 4.116 16 C -0.179 4.179 17 C -0.205 4.205 18 N -0.309 5.309 19 C 0.031 3.969 20 C -0.335 4.335 21 H 0.115 0.885 22 H 0.173 0.827 23 H 0.216 0.784 24 H 0.219 0.781 25 H 0.129 0.871 26 H 0.120 0.880 27 H 0.143 0.857 28 H 0.133 0.867 29 H 0.096 0.904 30 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 12.783 3.801 -5.509 14.429 hybrid contribution -0.644 0.653 -0.036 0.918 sum 12.139 4.455 -5.545 14.069 Atomic orbital electron populations 1.69671 1.09419 1.32646 1.32569 1.27005 0.95435 1.04481 0.89856 0.85603 0.79297 0.75578 0.81249 1.15066 1.19483 1.18367 1.19272 0.93366 0.96274 1.39354 0.92017 1.18660 0.92351 0.90653 0.89482 1.22271 0.95088 1.03071 1.01498 1.21807 0.90119 0.93293 0.99683 1.42848 1.09272 1.23523 1.31622 1.22546 0.83633 1.07463 1.13933 1.20373 0.94270 0.95418 0.96327 1.20128 0.89483 1.05108 0.96902 1.23088 0.98019 0.97679 0.99138 1.22986 1.03152 0.93705 1.00652 1.70555 0.99020 1.29711 1.31652 1.20771 0.95230 0.88754 0.92136 1.19799 0.88702 1.11575 1.13384 0.88491 0.82705 0.78408 0.78054 0.87065 0.88019 0.85703 0.86669 0.90406 0.87936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.60 13.93 21.83 0.30 -40.30 16 2 C 0.05 2.50 5.43 85.26 0.46 2.96 16 3 Si 0.96 36.44 24.48 68.60 1.68 38.12 16 4 H -0.23 -7.23 6.65 99.48 0.66 -6.57 16 5 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 6 H -0.26 -10.50 6.84 99.48 0.68 -9.81 16 7 C -0.45 -24.23 9.57 23.24 0.22 -24.01 16 8 H 0.06 3.63 8.06 -2.91 -0.02 3.60 16 9 C 0.10 4.83 5.22 -19.91 -0.10 4.73 16 10 C -0.20 -8.17 7.29 23.59 0.17 -8.00 16 11 C 0.07 2.60 10.88 82.93 0.90 3.50 16 12 N -0.40 -16.81 2.96 -352.01 -1.04 -17.85 16 13 C -0.15 -5.39 11.03 83.36 0.92 -4.47 16 14 C 0.07 2.70 6.71 41.85 0.28 2.98 16 15 C -0.10 -2.89 6.33 -11.54 -0.07 -2.96 16 16 C -0.14 -2.86 10.00 30.59 0.31 -2.56 16 17 C -0.17 -4.05 10.23 30.59 0.31 -3.74 16 18 N -0.59 -28.95 11.32 -182.61 -2.07 -31.02 16 19 C 0.27 13.62 7.75 133.54 1.04 14.65 16 20 C -0.31 -16.40 9.94 23.21 0.23 -16.17 16 21 H 0.30 13.17 8.30 -92.71 -0.77 12.40 16 22 H 0.16 5.63 4.82 -2.92 -0.01 5.61 16 23 H 0.20 4.89 8.06 -2.91 -0.02 4.87 16 24 H 0.20 5.33 7.32 -2.91 -0.02 5.31 16 25 H 0.11 3.23 8.14 -2.39 -0.02 3.21 16 26 H 0.10 1.91 7.10 -2.39 -0.02 1.89 16 27 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.10 5.62 8.06 -2.91 -0.02 5.60 16 Total: -1.00 -65.46 257.94 4.62 -60.83 By element: Atomic # 1 Polarization: 22.21 SS G_CDS: 1.08 Total: 23.29 kcal Atomic # 6 Polarization: -37.74 SS G_CDS: 4.67 Total: -33.07 kcal Atomic # 7 Polarization: -86.36 SS G_CDS: -2.80 Total: -89.16 kcal Atomic # 14 Polarization: 36.44 SS G_CDS: 1.68 Total: 38.12 kcal Total: -65.46 4.62 -60.83 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261117056.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.402 kcal (2) G-P(sol) polarization free energy of solvation -65.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds