Wall clock time and date at job start Mon Mar 30 2020 02:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00332 * 2 1 4 4 H 1.48504 * 109.47306 * 270.00619 * 3 2 1 5 5 H 1.48503 * 109.46893 * 29.99901 * 3 2 1 6 6 H 1.48491 * 109.47437 * 149.99772 * 3 2 1 7 7 C 1.37876 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34655 * 126.58353 * 85.02720 * 10 9 7 12 12 N 1.34125 * 108.19583 * 179.73361 * 11 10 9 13 13 C 1.30520 * 109.34933 * 0.02562 * 12 11 10 14 14 N 1.35825 * 108.56894 * 359.97438 * 13 12 11 15 15 C 1.40238 * 126.47548 * 180.02562 * 14 13 12 16 16 C 1.38817 * 120.06727 * 129.67561 * 15 14 13 17 17 C 1.38123 * 119.93419 * 179.72694 * 16 15 14 18 18 C 1.38272 * 120.06522 * 0.57650 * 17 16 15 19 19 C 1.38278 * 120.13189 * 359.70142 * 18 17 16 20 20 C 1.38125 * 120.06006 * 359.97438 * 19 18 17 21 21 H 0.96992 * 119.99820 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46451 * 60.00483 * 9 7 2 23 23 H 1.08995 * 109.47113 * 300.00565 * 9 7 2 24 24 H 1.07995 * 125.89865 * 359.75499 * 11 10 9 25 25 H 1.08003 * 125.71303 * 179.97438 * 13 12 11 26 26 H 1.08002 * 120.02884 * 0.02562 * 16 15 14 27 27 H 1.07997 * 119.96475 * 180.32457 * 17 16 15 28 28 H 1.07998 * 119.93371 * 179.72449 * 18 17 16 29 29 H 1.07997 * 119.97195 * 180.02562 * 19 18 17 30 30 H 1.07998 * 120.03182 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.8231 -4.1938 1.0767 12 7 3.6178 -5.1888 0.6557 13 6 3.5437 -5.2810 -0.6442 14 7 2.6844 -4.3315 -1.0968 15 6 2.3287 -4.0978 -2.4331 16 6 0.9906 -4.0055 -2.7906 17 6 0.6435 -3.7697 -4.1066 18 6 1.6270 -3.6375 -5.0694 19 6 2.9607 -3.7347 -4.7173 20 6 3.3140 -3.9637 -3.4017 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.6825 -3.8862 2.1023 25 1 4.0763 -5.9931 -1.2571 26 1 0.2218 -4.1132 -2.0397 27 1 -0.3973 -3.6926 -4.3844 28 1 1.3531 -3.4576 -6.0985 29 1 3.7268 -3.6306 -5.4713 30 1 4.3557 -4.0391 -3.1271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261207973.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:01 Heat of formation + Delta-G solvation = 82.328226 kcal Electronic energy + Delta-G solvation = -15020.837314 eV Core-core repulsion = 12588.888041 eV Total energy + Delta-G solvation = -2431.949273 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.60679 -38.71433 -33.67324 -33.29013 -31.06130 -30.38840 -28.87199 -26.58779 -23.33031 -22.83175 -22.44461 -20.36539 -19.44518 -17.38505 -16.40362 -16.09829 -15.24346 -14.63506 -14.56224 -13.88368 -13.51847 -13.33334 -12.85823 -12.57301 -12.47406 -12.06203 -11.72844 -11.26811 -11.05652 -10.84786 -10.68274 -10.09613 -9.69200 -9.55994 -9.25593 -8.83364 -8.46914 -8.21390 -7.51141 -6.10584 -4.14359 1.29245 1.49851 2.81622 3.26953 3.32130 3.33500 3.38858 3.83944 3.90249 4.40530 5.00327 5.03349 5.15016 5.23227 5.24773 5.47994 5.52662 5.61823 6.02177 6.06781 6.24778 6.41371 6.47229 6.53410 6.59948 6.83843 6.98356 7.33524 7.51096 7.59357 7.84144 7.95171 8.22613 8.69251 8.88521 9.49672 10.98782 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.010430 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.737009 B = 2683.894434 C = 3510.861144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.061 3.939 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.511 4.511 8 H 0.056 0.944 9 C 0.078 3.922 10 C 0.050 3.950 11 C -0.061 4.061 12 N -0.488 5.488 13 C 0.149 3.851 14 N -0.422 5.422 15 C 0.142 3.858 16 C -0.103 4.103 17 C -0.103 4.103 18 C -0.124 4.124 19 C -0.109 4.109 20 C -0.120 4.120 21 H 0.263 0.737 22 H 0.033 0.967 23 H 0.045 0.955 24 H 0.166 0.834 25 H 0.196 0.804 26 H 0.132 0.868 27 H 0.128 0.872 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.427 -7.464 -9.301 12.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.040 3.960 10 C -0.063 4.063 11 C -0.205 4.205 12 N -0.205 5.205 13 C -0.130 4.130 14 N -0.104 5.104 15 C 0.051 3.949 16 C -0.122 4.122 17 C -0.121 4.121 18 C -0.143 4.143 19 C -0.127 4.127 20 C -0.139 4.139 21 H 0.073 0.927 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.183 0.817 25 H 0.212 0.788 26 H 0.150 0.850 27 H 0.146 0.854 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 2.744 -7.839 -8.826 12.119 hybrid contribution 0.044 1.557 -0.487 1.632 sum 2.788 -6.282 -9.312 11.574 Atomic orbital electron populations 1.69936 1.05963 1.26959 1.50319 1.24957 0.94888 0.99197 0.94994 0.86526 0.79951 0.83062 0.78172 1.20640 1.21012 1.19724 1.20991 0.93034 0.89673 1.51274 0.92590 1.18009 0.91407 0.87588 0.98991 1.22544 1.01698 0.97214 0.84800 1.21904 1.01670 0.98014 0.98896 1.70114 1.21607 1.20008 1.08807 1.24846 0.99182 0.97179 0.91820 1.43068 1.35580 1.27146 1.04593 1.17666 0.93550 1.01399 0.82304 1.21186 0.94700 0.99307 0.97010 1.21022 0.99819 0.99061 0.92249 1.21165 0.92955 1.00609 0.99534 1.20941 0.96454 1.00006 0.95333 1.21022 0.98716 1.01330 0.92878 0.92748 0.94934 0.93705 0.81665 0.78754 0.85020 0.85377 0.85847 0.85579 0.85606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.78 13.29 55.43 0.74 -25.05 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.31 9.09 -34.44 -0.31 -14.62 16 8 H 0.06 1.60 7.74 -52.48 -0.41 1.20 16 9 C 0.08 1.99 5.27 -29.03 -0.15 1.84 16 10 C 0.05 1.14 5.99 -81.50 -0.49 0.65 16 11 C -0.06 -1.34 11.78 -17.82 -0.21 -1.55 16 12 N -0.49 -10.19 11.24 -14.48 -0.16 -10.35 16 13 C 0.15 2.75 12.31 -89.64 -1.10 1.65 16 14 N -0.42 -8.42 2.88 -57.91 -0.17 -8.59 16 15 C 0.14 2.56 5.87 -83.58 -0.49 2.07 16 16 C -0.10 -1.76 8.38 -39.41 -0.33 -2.09 16 17 C -0.10 -1.46 10.04 -39.61 -0.40 -1.86 16 18 C -0.12 -1.56 10.04 -39.55 -0.40 -1.96 16 19 C -0.11 -1.40 10.04 -39.61 -0.40 -1.79 16 20 C -0.12 -1.83 9.69 -39.41 -0.38 -2.21 16 21 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 22 H 0.03 0.85 5.63 -51.93 -0.29 0.55 16 23 H 0.04 1.19 8.14 -51.93 -0.42 0.77 16 24 H 0.17 3.41 8.06 -52.49 -0.42 2.99 16 25 H 0.20 2.73 8.06 -52.48 -0.42 2.30 16 26 H 0.13 2.35 7.15 -52.49 -0.38 1.97 16 27 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 28 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 29 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 30 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 267.54 15.07 4.03 4.03 Total: -1.00 -31.27 267.54 -8.51 -39.78 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -3.17 Total: 1.89 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: -4.76 Total: -18.26 kcal Atomic # 7 Polarization: -44.39 SS G_CDS: 0.41 Total: -43.98 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.27 -8.51 -39.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207973.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.112 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds