Wall clock time and date at job start Mon Mar 30 2020 02:53:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00332 * 2 1 4 4 H 1.48504 * 109.47306 * 270.00619 * 3 2 1 5 5 H 1.48503 * 109.46893 * 29.99901 * 3 2 1 6 6 H 1.48491 * 109.47437 * 149.99772 * 3 2 1 7 7 C 1.37876 * 119.99858 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00266 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00140 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34655 * 126.58353 * 85.02720 * 10 9 7 12 12 N 1.34125 * 108.19583 * 179.73361 * 11 10 9 13 13 C 1.30520 * 109.34933 * 0.02562 * 12 11 10 14 14 N 1.35825 * 108.56894 * 359.97438 * 13 12 11 15 15 C 1.40238 * 126.47548 * 180.02562 * 14 13 12 16 16 C 1.38817 * 120.06727 * 129.67561 * 15 14 13 17 17 C 1.38123 * 119.93419 * 179.72694 * 16 15 14 18 18 C 1.38272 * 120.06522 * 0.57650 * 17 16 15 19 19 C 1.38278 * 120.13189 * 359.70142 * 18 17 16 20 20 C 1.38125 * 120.06006 * 359.97438 * 19 18 17 21 21 H 0.96992 * 119.99820 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46451 * 60.00483 * 9 7 2 23 23 H 1.08995 * 109.47113 * 300.00565 * 9 7 2 24 24 H 1.07995 * 125.89865 * 359.75499 * 11 10 9 25 25 H 1.08003 * 125.71303 * 179.97438 * 13 12 11 26 26 H 1.08002 * 120.02884 * 0.02562 * 16 15 14 27 27 H 1.07997 * 119.96475 * 180.32457 * 17 16 15 28 28 H 1.07998 * 119.93371 * 179.72449 * 18 17 16 29 29 H 1.07997 * 119.97195 * 180.02562 * 19 18 17 30 30 H 1.07998 * 120.03182 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6447 -0.0005 11 6 2.8231 -4.1938 1.0767 12 7 3.6178 -5.1888 0.6557 13 6 3.5437 -5.2810 -0.6442 14 7 2.6844 -4.3315 -1.0968 15 6 2.3287 -4.0978 -2.4331 16 6 0.9906 -4.0055 -2.7906 17 6 0.6435 -3.7697 -4.1066 18 6 1.6270 -3.6375 -5.0694 19 6 2.9607 -3.7347 -4.7173 20 6 3.3140 -3.9637 -3.4017 21 1 -0.4849 0.8400 0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.6825 -3.8862 2.1023 25 1 4.0763 -5.9931 -1.2571 26 1 0.2218 -4.1132 -2.0397 27 1 -0.3973 -3.6926 -4.3844 28 1 1.3531 -3.4576 -6.0985 29 1 3.7268 -3.6306 -5.4713 30 1 4.3557 -4.0391 -3.1271 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261207973.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:00 Heat of formation + Delta-G solvation = 66.059708 kcal Electronic energy + Delta-G solvation = -15021.542770 eV Core-core repulsion = 12588.888041 eV Total energy + Delta-G solvation = -2432.654729 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.15948 -39.89394 -35.56361 -34.87240 -32.66944 -31.82032 -30.17575 -28.47867 -25.22291 -24.13225 -23.75573 -21.86459 -20.92220 -18.90127 -18.48896 -17.24724 -16.61311 -16.57089 -15.96088 -15.24815 -14.89275 -14.55338 -14.46375 -14.31616 -14.12983 -13.65079 -13.48028 -12.79882 -12.73072 -12.42728 -12.17605 -12.03620 -11.65131 -11.16303 -10.92222 -10.61514 -9.95449 -9.51688 -9.22384 -8.23808 -6.36821 0.08640 0.37277 1.25674 1.36856 1.38482 1.49696 1.88261 2.18124 2.39165 2.75535 3.07053 3.79199 3.89241 3.94596 3.99464 4.21437 4.42132 4.45775 4.57722 4.73776 4.82533 4.93678 5.02755 5.22265 5.39208 5.41375 5.50572 5.66177 5.70246 5.77299 5.92381 6.10002 6.51117 6.70676 7.08129 7.31224 8.84611 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.019511 B = 0.010430 C = 0.007973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.737009 B = 2683.894434 C = 3510.861144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.014 3.986 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.271 1.271 7 C -0.528 4.528 8 H 0.044 0.956 9 C 0.092 3.908 10 C 0.017 3.983 11 C -0.067 4.067 12 N -0.511 5.511 13 C 0.172 3.828 14 N -0.419 5.419 15 C 0.103 3.897 16 C -0.129 4.129 17 C -0.109 4.109 18 C -0.113 4.113 19 C -0.101 4.101 20 C -0.125 4.125 21 H 0.267 0.733 22 H 0.020 0.980 23 H 0.019 0.981 24 H 0.167 0.833 25 H 0.242 0.758 26 H 0.107 0.893 27 H 0.148 0.852 28 H 0.163 0.837 29 H 0.166 0.834 30 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.871 -7.268 -11.836 14.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.785 3.215 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.195 1.195 7 C -0.566 4.566 8 H 0.062 0.938 9 C 0.054 3.946 10 C -0.096 4.096 11 C -0.211 4.211 12 N -0.229 5.229 13 C -0.108 4.108 14 N -0.100 5.100 15 C 0.012 3.988 16 C -0.149 4.149 17 C -0.127 4.127 18 C -0.131 4.131 19 C -0.119 4.119 20 C -0.144 4.144 21 H 0.076 0.924 22 H 0.038 0.962 23 H 0.038 0.962 24 H 0.184 0.816 25 H 0.258 0.742 26 H 0.125 0.875 27 H 0.165 0.835 28 H 0.181 0.819 29 H 0.184 0.816 30 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.178 -7.646 -11.377 14.330 hybrid contribution -0.421 1.419 0.182 1.491 sum 3.757 -6.227 -11.195 13.350 Atomic orbital electron populations 1.70040 1.07323 1.28056 1.50751 1.25773 0.95749 1.02599 0.94364 0.85511 0.78619 0.78781 0.78575 1.19643 1.20055 1.19543 1.21190 0.92571 0.91167 1.51675 0.93788 1.17634 0.91512 0.88357 0.97111 1.22088 1.02959 0.98028 0.86504 1.22023 1.01747 0.98374 0.98999 1.70136 1.22380 1.20138 1.10208 1.25772 0.97291 0.96173 0.91566 1.43130 1.35189 1.26687 1.05030 1.18040 0.94623 1.04312 0.81780 1.21202 0.94213 1.01343 0.98104 1.21344 1.01629 0.98434 0.91325 1.21661 0.92442 0.98119 1.00898 1.21439 0.97648 0.97807 0.94980 1.21283 0.98673 1.01113 0.93381 0.92375 0.96150 0.96241 0.81566 0.74163 0.87518 0.83456 0.81903 0.81648 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.31 13.29 21.45 0.28 -54.02 16 2 C 0.01 0.81 5.46 84.65 0.46 1.27 16 3 Si 0.96 44.30 29.54 68.60 2.03 46.33 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 6 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 7 C -0.53 -30.45 9.09 25.60 0.23 -30.21 16 8 H 0.04 2.58 7.74 -2.91 -0.02 2.56 16 9 C 0.09 4.95 5.27 29.10 0.15 5.11 16 10 C 0.02 0.83 5.99 40.91 0.25 1.07 16 11 C -0.07 -3.05 11.78 83.52 0.98 -2.07 16 12 N -0.51 -21.24 11.24 -199.72 -2.25 -23.48 16 13 C 0.17 6.16 12.31 180.01 2.22 8.37 16 14 N -0.42 -16.88 2.88 -337.12 -0.97 -17.85 16 15 C 0.10 3.67 5.87 38.07 0.22 3.90 16 16 C -0.13 -4.52 8.38 22.38 0.19 -4.33 16 17 C -0.11 -2.93 10.04 22.25 0.22 -2.71 16 18 C -0.11 -2.42 10.04 22.29 0.22 -2.20 16 19 C -0.10 -2.18 10.04 22.25 0.22 -1.95 16 20 C -0.13 -3.52 9.69 22.38 0.22 -3.31 16 21 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 22 H 0.02 1.13 5.63 -2.38 -0.01 1.11 16 23 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.17 7.22 8.06 -2.91 -0.02 7.20 16 25 H 0.24 5.98 8.06 -2.91 -0.02 5.96 16 26 H 0.11 4.13 7.15 -2.91 -0.02 4.11 16 27 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 28 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16 30 H 0.14 3.45 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -69.26 267.54 5.82 -63.44 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 1.13 Total: 12.65 kcal Atomic # 6 Polarization: -32.65 SS G_CDS: 5.59 Total: -27.06 kcal Atomic # 7 Polarization: -92.43 SS G_CDS: -2.93 Total: -95.36 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -69.26 5.82 -63.44 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261207973.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.499 kcal (2) G-P(sol) polarization free energy of solvation -69.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds