Wall clock time and date at job start Mon Mar 30 2020 02:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 120.00212 * 2 1 4 4 H 1.48493 * 109.47317 * 239.99886 * 3 2 1 5 5 H 1.48505 * 109.46829 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47004 * 119.99683 * 3 2 1 7 7 C 1.37878 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99823 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00152 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.47430 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47052 * 179.97438 * 10 9 7 12 12 C 1.36683 * 121.24732 * 264.99995 * 11 10 9 13 13 N 1.32598 * 120.74458 * 180.02562 * 12 11 10 14 14 N 1.28497 * 123.27427 * 359.97438 * 13 12 11 15 15 C 1.33573 * 121.33200 * 0.02562 * 14 13 12 16 16 C 1.40477 * 121.83588 * 179.97438 * 15 14 13 17 17 C 1.36115 * 119.61867 * 179.97438 * 16 15 14 18 18 C 1.39382 * 121.15003 * 359.97438 * 17 16 15 19 19 C 1.36215 * 120.92455 * 359.97438 * 18 17 16 20 20 C 1.40212 * 119.46962 * 0.28056 * 19 18 17 21 21 H 0.97003 * 119.99790 * 0.02562 * 1 2 3 22 22 H 1.09006 * 109.46606 * 60.00404 * 9 7 2 23 23 H 1.08994 * 109.47311 * 300.00502 * 9 7 2 24 24 H 1.09000 * 109.46729 * 59.99903 * 10 9 7 25 25 H 1.09001 * 109.47147 * 300.00230 * 10 9 7 26 26 H 1.08002 * 119.62233 * 0.04785 * 12 11 10 27 27 H 1.08003 * 120.18879 * 359.96432 * 16 15 14 28 28 H 1.07998 * 119.42323 * 179.97438 * 17 16 15 29 29 H 1.08004 * 119.54114 * 180.02562 * 18 17 16 30 30 H 1.08002 * 120.26382 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4917 -4.9672 -0.0012 12 6 1.2267 -5.6323 1.1631 13 7 0.5632 -6.7803 1.1520 14 7 0.1327 -7.3354 0.0761 15 6 0.3324 -6.7777 -1.1211 16 6 -0.1331 -7.3755 -2.3040 17 6 0.0952 -6.7672 -3.5001 18 6 0.7841 -5.5578 -3.5741 19 6 1.2498 -4.9475 -2.4489 20 6 1.0373 -5.5484 -1.2000 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.8726 -3.6048 0.8877 25 1 2.8713 -3.6040 -0.8923 26 1 1.5611 -5.2179 2.1027 27 1 -0.6690 -8.3124 -2.2646 28 1 -0.2637 -7.2298 -4.4076 29 1 0.9504 -5.0978 -4.5370 30 1 1.7826 -4.0107 -2.5186 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261227496.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:09 Heat of formation + Delta-G solvation = 40.077643 kcal Electronic energy + Delta-G solvation = -14718.120140 eV Core-core repulsion = 12284.338745 eV Total energy + Delta-G solvation = -2433.781395 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.36953 -38.72794 -36.97153 -34.85606 -32.71917 -31.97813 -31.13497 -27.70271 -25.67885 -25.10276 -23.58398 -21.79832 -19.65424 -19.09086 -18.57262 -17.18527 -16.57720 -16.10538 -16.03933 -15.42215 -15.01660 -14.90847 -14.36456 -14.08362 -13.47395 -13.32544 -13.13540 -12.85172 -12.72322 -12.63245 -12.05292 -12.00302 -11.66196 -11.38340 -11.16806 -10.68087 -10.57543 -10.30778 -9.26735 -8.21750 -6.34224 -0.97765 -0.32788 0.79857 1.42218 1.44393 1.52345 1.86639 2.40338 2.91889 3.05850 3.12397 3.36747 3.51213 3.60667 3.87981 4.04169 4.18600 4.32114 4.42718 4.65974 4.68866 4.78812 4.91843 4.98419 5.02279 5.26883 5.33345 5.39665 5.46426 5.61111 5.77943 5.80353 6.15932 6.81963 7.36127 7.58921 8.89589 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.006708 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.924065 B = 4173.310753 C = 4674.618291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.542 4.542 8 H 0.070 0.930 9 C 0.041 3.959 10 C -0.065 4.065 11 C -0.041 4.041 12 C -0.009 4.009 13 N -0.244 5.244 14 N -0.246 5.246 15 C 0.045 3.955 16 C -0.098 4.098 17 C -0.079 4.079 18 C -0.092 4.092 19 C -0.113 4.113 20 C -0.087 4.087 21 H 0.263 0.737 22 H -0.005 1.005 23 H -0.013 1.013 24 H 0.085 0.915 25 H 0.084 0.916 26 H 0.185 0.815 27 H 0.161 0.839 28 H 0.180 0.820 29 H 0.167 0.833 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.076 -10.904 -8.086 13.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.188 1.188 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.579 4.579 8 H 0.088 0.912 9 C 0.003 3.997 10 C -0.103 4.103 11 C -0.053 4.053 12 C -0.160 4.160 13 N -0.096 5.096 14 N -0.100 5.100 15 C -0.083 4.083 16 C -0.119 4.119 17 C -0.099 4.099 18 C -0.111 4.111 19 C -0.131 4.131 20 C -0.096 4.096 21 H 0.072 0.928 22 H 0.013 0.987 23 H 0.006 0.994 24 H 0.103 0.897 25 H 0.103 0.897 26 H 0.202 0.798 27 H 0.178 0.822 28 H 0.197 0.803 29 H 0.184 0.816 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.332 -12.000 -7.187 14.181 hybrid contribution 0.623 2.248 -0.266 2.348 sum 2.955 -9.752 -7.453 12.625 Atomic orbital electron populations 1.70107 1.07970 1.27916 1.51381 1.25969 0.95637 1.03394 0.94587 0.85499 0.78216 0.77986 0.79357 1.18795 1.21297 1.19153 1.21604 0.93832 0.91582 1.50923 0.91227 1.18884 0.93752 0.91939 0.95098 1.20676 0.97493 0.88316 1.03789 1.21436 0.94323 0.96454 0.93077 1.23849 0.98697 0.93271 1.00225 1.72776 1.06449 1.09223 1.21150 1.73599 1.14971 1.26243 0.95216 1.20780 0.98158 0.93630 0.95767 1.21070 0.99979 1.01393 0.89458 1.21509 0.95425 0.94246 0.98732 1.21558 0.95155 0.95071 0.99359 1.21284 1.00469 1.00281 0.91112 1.19038 0.99048 0.95686 0.95810 0.92786 0.98651 0.99433 0.89667 0.89750 0.79758 0.82178 0.80313 0.81578 0.84527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 2 C 0.00 0.12 5.46 84.65 0.46 0.59 16 3 Si 0.97 42.51 29.54 68.60 2.03 44.54 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.54 -29.06 9.11 25.60 0.23 -28.83 16 8 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 9 C 0.04 2.04 4.95 29.85 0.15 2.19 16 10 C -0.06 -2.50 4.80 29.85 0.14 -2.36 16 11 C -0.04 -1.52 5.19 -19.61 -0.10 -1.62 16 12 C -0.01 -0.31 10.90 84.21 0.92 0.61 16 13 N -0.24 -9.40 11.48 -58.11 -0.67 -10.06 16 14 N -0.25 -9.20 11.57 -51.99 -0.60 -9.80 16 15 C 0.05 1.53 6.69 40.34 0.27 1.80 16 16 C -0.10 -2.40 10.01 22.32 0.22 -2.17 16 17 C -0.08 -1.47 9.94 22.05 0.22 -1.25 16 18 C -0.09 -1.98 9.96 22.07 0.22 -1.76 16 19 C -0.11 -3.37 9.36 22.28 0.21 -3.16 16 20 C -0.09 -3.07 5.75 -21.27 -0.12 -3.19 16 21 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 22 H 0.00 -0.27 8.14 -2.38 -0.02 -0.29 16 23 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 24 H 0.08 3.05 8.08 -2.39 -0.02 3.03 16 25 H 0.08 3.00 6.90 -2.39 -0.02 2.99 16 26 H 0.19 5.79 8.06 -2.91 -0.02 5.77 16 27 H 0.16 3.10 8.06 -2.91 -0.02 3.07 16 28 H 0.18 1.67 8.06 -2.91 -0.02 1.65 16 29 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 30 H 0.14 4.20 6.70 -2.91 -0.02 4.18 16 Total: -1.00 -68.08 265.52 5.00 -63.07 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: 1.14 Total: 6.84 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 2.82 Total: -39.17 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -0.98 Total: -75.28 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -68.08 5.00 -63.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261227496.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.151 kcal (2) G-P(sol) polarization free energy of solvation -68.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds