Wall clock time and date at job start Mon Mar 30 2020 03:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36207 * 126.39980 * 2 1 4 4 N 1.32763 * 108.69088 * 180.02562 * 3 2 1 5 5 C 1.33039 * 109.25899 * 359.97438 * 4 3 2 6 6 C 1.39863 * 125.99230 * 179.97438 * 5 4 3 7 7 H 1.08002 * 120.00362 * 180.02562 * 6 5 4 8 8 C 1.40292 * 119.99984 * 359.75034 * 6 5 4 9 9 N 1.30674 * 119.99534 * 0.27823 * 8 6 5 10 10 Si 1.86794 * 119.99941 * 180.27671 * 8 6 5 11 11 H 1.48491 * 109.47447 * 60.00365 * 10 8 6 12 12 H 1.48504 * 109.46883 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.47066 * 300.00068 * 10 8 6 14 14 N 1.36547 * 126.40172 * 180.29369 * 2 1 3 15 15 C 1.39951 * 126.58481 * 359.97438 * 14 2 1 16 16 C 1.38910 * 120.06876 * 64.92353 * 15 14 2 17 17 C 1.38103 * 119.92164 * 179.77088 * 16 15 14 18 18 C 1.38293 * 120.07147 * 0.50303 * 17 16 15 19 19 C 1.38297 * 120.15145 * 359.74798 * 18 17 16 20 20 C 1.38095 * 120.06843 * 359.97438 * 19 18 17 21 21 H 1.08997 * 109.47644 * 89.97386 * 1 2 3 22 22 H 1.09005 * 109.46877 * 209.97596 * 1 2 3 23 23 H 1.09003 * 109.46943 * 329.97130 * 1 2 3 24 24 H 1.08002 * 125.65115 * 359.97438 * 3 2 1 25 25 H 0.97000 * 119.99083 * 179.97438 * 9 8 6 26 26 H 1.07998 * 120.03975 * 0.02562 * 16 15 14 27 27 H 1.08002 * 119.96082 * 180.24902 * 17 16 15 28 28 H 1.08000 * 119.92315 * 179.72155 * 18 17 16 29 29 H 1.08004 * 119.96742 * 179.97438 * 19 18 17 30 30 H 1.08004 * 120.03619 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3152 1.0963 0.0000 4 7 3.5800 0.6925 -0.0006 5 6 3.6159 -0.6374 -0.0004 6 6 4.7694 -1.4285 -0.0013 7 1 4.6858 -2.5052 -0.0015 8 6 6.0350 -0.8232 -0.0079 9 7 6.1361 0.4796 -0.0077 10 14 7.5755 -1.8797 -0.0170 11 1 7.5812 -2.7362 -1.2300 12 1 8.7755 -1.0050 -0.0224 13 1 7.5944 -2.7377 1.1949 14 7 2.3173 -1.0990 -0.0056 15 6 1.9078 -2.4373 -0.0120 16 6 1.2166 -2.9484 -1.1031 17 6 0.8181 -4.2707 -1.1082 18 6 1.0974 -5.0828 -0.0242 19 6 1.7808 -4.5757 1.0658 20 6 2.1871 -3.2559 1.0749 21 1 -0.3634 0.0005 -1.0276 22 1 -0.3633 -0.8903 0.5135 23 1 -0.3633 0.8898 0.5143 24 1 1.9824 2.1238 -0.0004 25 1 7.0113 0.8980 -0.0118 26 1 0.9946 -2.3136 -1.9482 27 1 0.2841 -4.6698 -1.9579 28 1 0.7807 -6.1153 -0.0289 29 1 1.9970 -5.2125 1.9110 30 1 2.7212 -2.8605 1.9263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261235859.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:00:31 Heat of formation + Delta-G solvation = 80.394152 kcal Electronic energy + Delta-G solvation = -15182.117161 eV Core-core repulsion = 12750.084020 eV Total energy + Delta-G solvation = -2432.033140 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.39239 -38.23893 -33.53120 -32.68370 -30.81093 -30.37301 -28.35038 -27.17750 -23.56006 -22.30201 -22.22995 -19.91522 -18.91170 -17.19821 -16.12399 -15.63600 -14.90946 -14.67886 -13.93358 -13.41157 -13.14504 -12.98116 -12.56506 -12.16172 -12.11105 -11.84884 -11.74445 -11.23353 -11.15259 -11.00269 -10.73898 -10.45440 -10.21897 -9.22399 -8.76474 -8.60701 -7.93221 -7.67382 -6.98905 -6.44684 -4.29060 1.64532 1.73419 3.04241 3.13917 3.15916 3.53684 3.97253 4.14666 4.26233 4.65465 5.23202 5.26721 5.42345 5.60724 5.77654 5.87256 5.91980 6.07693 6.23577 6.28622 6.36651 6.46257 6.56902 6.71284 6.80595 6.95035 7.13094 7.20450 7.30421 7.66615 8.07054 8.21924 8.55356 8.92039 9.31103 10.17283 10.47600 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.011151 C = 0.007943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.104412 B = 2510.452504 C = 3524.048607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.155 4.155 3 C 0.003 3.997 4 N -0.518 5.518 5 C 0.384 3.616 6 C -0.453 4.453 7 H 0.079 0.921 8 C 0.081 3.919 9 N -0.738 5.738 10 Si 0.911 3.089 11 H -0.266 1.266 12 H -0.277 1.277 13 H -0.266 1.266 14 N -0.470 5.470 15 C 0.177 3.823 16 C -0.126 4.126 17 C -0.113 4.113 18 C -0.138 4.138 19 C -0.111 4.111 20 C -0.117 4.117 21 H 0.043 0.957 22 H 0.041 0.959 23 H 0.058 0.942 24 H 0.136 0.864 25 H 0.274 0.726 26 H 0.120 0.880 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.121 0.879 30 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.855 -7.905 0.125 10.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.263 4.263 3 C -0.149 4.149 4 N -0.239 5.239 5 C 0.145 3.855 6 C -0.492 4.492 7 H 0.097 0.903 8 C -0.143 4.143 9 N -0.362 5.362 10 Si 0.735 3.265 11 H -0.191 1.191 12 H -0.202 1.202 13 H -0.191 1.191 14 N -0.158 5.158 15 C 0.084 3.916 16 C -0.146 4.146 17 C -0.131 4.131 18 C -0.157 4.157 19 C -0.130 4.130 20 C -0.136 4.136 21 H 0.061 0.939 22 H 0.060 0.940 23 H 0.077 0.923 24 H 0.154 0.846 25 H 0.085 0.915 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.136 0.864 29 H 0.139 0.861 30 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -6.093 -7.190 0.122 9.425 hybrid contribution -0.012 -0.940 -0.063 0.943 sum -6.106 -8.130 0.059 10.167 Atomic orbital electron populations 1.19758 0.90171 1.00615 0.99844 1.20490 0.92266 0.87214 1.26372 1.21978 0.91048 0.96119 1.05747 1.71329 1.16866 1.07171 1.28498 1.20373 0.81305 0.88814 0.94978 1.18151 0.87924 0.93254 1.49856 0.90305 1.25727 0.99991 0.95052 0.93548 1.69999 1.25272 1.09600 1.31295 0.86341 0.80182 0.80236 0.79713 1.19115 1.20240 1.19081 1.42889 1.07578 1.01573 1.63778 1.17600 0.96066 0.84557 0.93351 1.21257 1.00277 0.95599 0.97451 1.20925 1.00450 0.93328 0.98431 1.21035 1.00728 0.99497 0.94412 1.20969 0.98658 0.94850 0.98515 1.21332 1.00412 0.94038 0.97856 0.93861 0.93977 0.92293 0.84617 0.91508 0.86167 0.86217 0.86424 0.86079 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.84 10.08 36.00 0.36 -0.48 16 2 C -0.15 -3.66 6.90 -81.23 -0.56 -4.22 16 3 C 0.00 0.08 11.77 -17.88 -0.21 -0.13 16 4 N -0.52 -15.25 9.41 -12.68 -0.12 -15.37 16 5 C 0.38 10.93 7.37 -155.33 -1.15 9.79 16 6 C -0.45 -12.56 8.94 -38.20 -0.34 -12.90 16 7 H 0.08 2.08 7.35 -52.49 -0.39 1.69 16 8 C 0.08 2.16 5.50 -17.27 -0.10 2.07 16 9 N -0.74 -20.72 11.90 55.57 0.66 -20.06 16 10 Si 0.91 19.43 29.56 -169.99 -5.03 14.40 16 11 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 12 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 13 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 14 N -0.47 -11.67 2.84 -55.76 -0.16 -11.83 16 15 C 0.18 3.77 4.91 -83.65 -0.41 3.36 16 16 C -0.13 -2.32 9.84 -39.38 -0.39 -2.70 16 17 C -0.11 -1.68 10.04 -39.61 -0.40 -2.08 16 18 C -0.14 -1.94 10.04 -39.54 -0.40 -2.34 16 19 C -0.11 -1.71 10.04 -39.61 -0.40 -2.11 16 20 C -0.12 -2.24 9.49 -39.39 -0.37 -2.61 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.75 7.92 -51.93 -0.41 0.33 16 23 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 24 H 0.14 3.07 8.06 -52.49 -0.42 2.64 16 25 H 0.27 6.99 8.29 -40.82 -0.34 6.65 16 26 H 0.12 2.20 8.06 -52.49 -0.42 1.77 16 27 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 28 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 29 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.13 2.51 8.06 -52.48 -0.42 2.09 16 LS Contribution 268.15 15.07 4.04 4.04 Total: -1.00 -31.62 268.15 -8.27 -39.89 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -3.31 Total: 3.29 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -4.35 Total: -14.36 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: 0.38 Total: -47.26 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.62 -8.27 -39.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261235859.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.286 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.892 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds