Wall clock time and date at job start Mon Mar 30 2020 03:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46924 * 2 1 4 4 C 1.50697 * 109.47033 * 239.99884 * 2 1 3 5 5 H 1.08000 * 119.99636 * 245.61813 * 4 2 1 6 6 C 1.37882 * 120.00272 * 65.61217 * 4 2 1 7 7 N 1.31509 * 120.00293 * 197.59985 * 6 4 2 8 8 Si 1.86801 * 119.99733 * 17.60557 * 6 4 2 9 9 H 1.48500 * 109.46994 * 180.02562 * 8 6 4 10 10 H 1.48494 * 109.47356 * 59.99315 * 8 6 4 11 11 H 1.48500 * 109.46862 * 299.99585 * 8 6 4 12 12 C 1.50693 * 109.46866 * 119.99887 * 2 1 3 13 13 C 1.36685 * 121.24745 * 60.00190 * 12 2 1 14 14 N 1.32604 * 120.74546 * 179.97438 * 13 12 2 15 15 N 1.28493 * 123.27335 * 0.02562 * 14 13 12 16 16 C 1.33573 * 121.33632 * 359.97438 * 15 14 13 17 17 C 1.40477 * 121.83961 * 179.97438 * 16 15 14 18 18 C 1.36120 * 119.61983 * 180.02562 * 17 16 15 19 19 C 1.39395 * 121.14766 * 0.02562 * 18 17 16 20 20 C 1.36217 * 120.92224 * 359.97438 * 19 18 17 21 21 C 1.40213 * 119.47121 * 359.71851 * 20 19 18 22 22 H 1.09004 * 109.47324 * 66.18714 * 1 2 3 23 23 H 1.09004 * 109.47394 * 186.19029 * 1 2 3 24 24 H 1.09003 * 109.47275 * 306.18980 * 1 2 3 25 25 H 0.97001 * 119.99981 * 354.80936 * 7 6 4 26 26 H 1.07991 * 119.62894 * 359.97398 * 13 12 2 27 27 H 1.07992 * 120.19219 * 0.04367 * 17 16 15 28 28 H 1.07991 * 119.42610 * 180.02562 * 18 17 16 29 29 H 1.07993 * 119.53743 * 179.97438 * 19 18 17 30 30 H 1.07994 * 120.26189 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.5764 -1.6384 -1.1339 6 6 1.7973 -0.1758 -2.4795 7 7 1.9142 -0.9302 -3.5503 8 14 1.3130 1.6202 -2.6506 9 1 1.1180 1.9456 -4.0863 10 1 2.3872 2.4782 -2.0893 11 1 0.0480 1.8642 -1.9121 12 6 2.0323 -0.7104 1.2304 13 6 1.7178 -2.0184 1.4720 14 7 2.1656 -2.6339 2.5578 15 7 2.9067 -2.0615 3.4376 16 6 3.2788 -0.7851 3.3082 17 6 4.0883 -0.1487 4.2638 18 6 4.4400 1.1543 4.0869 19 6 4.0105 1.8722 2.9719 20 6 3.2246 1.2892 2.0242 21 6 2.8483 -0.0535 2.1708 22 1 -0.3634 0.4149 -0.9402 23 1 -0.3634 -1.0217 0.1108 24 1 -0.3634 0.6068 0.8294 25 1 2.2382 -1.8409 -3.4690 26 1 1.0975 -2.5567 0.7707 27 1 4.4297 -0.6901 5.1335 28 1 5.0628 1.6404 4.8232 29 1 4.3048 2.9050 2.8578 30 1 2.8976 1.8555 1.1648 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261239001.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:46 Heat of formation + Delta-G solvation = 46.753485 kcal Electronic energy + Delta-G solvation = -15163.424823 eV Core-core repulsion = 12729.932914 eV Total energy + Delta-G solvation = -2433.491909 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.096 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.36812 -38.71874 -37.44284 -34.53597 -32.70139 -32.17793 -30.94273 -26.92215 -26.12284 -25.36445 -23.76995 -21.40582 -19.95282 -19.59351 -18.68146 -17.23992 -16.18357 -16.01291 -15.99649 -15.33706 -15.23472 -14.84640 -14.37078 -14.14965 -13.47608 -13.34688 -13.25660 -12.88529 -12.77912 -12.33523 -11.89330 -11.72345 -11.57214 -11.52355 -11.03509 -10.64617 -10.44548 -10.28612 -9.28538 -8.76728 -6.44019 -0.91416 -0.30966 0.83028 1.47644 1.54329 1.72871 1.89177 2.48616 2.94436 3.01195 3.08359 3.40086 3.54642 3.67653 3.94263 4.06281 4.25160 4.33808 4.36443 4.63784 4.74806 4.80712 4.88390 4.95248 4.96720 5.19255 5.30273 5.35594 5.41517 5.54258 5.82390 5.87576 5.97277 6.47757 7.34355 7.61292 8.58596 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.030395 B = 0.009412 C = 0.007932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.972159 B = 2974.291070 C = 3529.362172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 H 0.056 0.944 4 C -0.598 4.598 5 H 0.013 0.987 6 C -0.014 4.014 7 N -0.932 5.932 8 Si 1.078 2.922 9 H -0.292 1.292 10 H -0.254 1.254 11 H -0.235 1.235 12 C -0.012 4.012 13 C -0.008 4.008 14 N -0.247 5.247 15 N -0.254 5.254 16 C 0.044 3.956 17 C -0.099 4.099 18 C -0.077 4.077 19 C -0.090 4.090 20 C -0.114 4.114 21 C -0.095 4.095 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.056 0.944 25 H 0.251 0.749 26 H 0.160 0.840 27 H 0.158 0.842 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 10.514 14.041 17.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.030 3.970 3 H 0.074 0.926 4 C -0.636 4.636 5 H 0.032 0.968 6 C -0.213 4.213 7 N -0.567 5.567 8 Si 0.897 3.103 9 H -0.218 1.218 10 H -0.178 1.178 11 H -0.159 1.159 12 C -0.024 4.024 13 C -0.161 4.161 14 N -0.098 5.098 15 N -0.108 5.108 16 C -0.085 4.085 17 C -0.120 4.120 18 C -0.097 4.097 19 C -0.109 4.109 20 C -0.133 4.133 21 C -0.103 4.103 22 H 0.078 0.922 23 H 0.062 0.938 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.177 0.823 27 H 0.176 0.824 28 H 0.199 0.801 29 H 0.191 0.809 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.206 10.243 13.788 17.317 hybrid contribution 0.419 -1.131 -0.483 1.299 sum 2.625 9.111 13.305 16.338 Atomic orbital electron populations 1.22190 0.95608 1.01069 1.01344 1.18196 0.94057 0.96159 0.88612 0.92626 1.21966 1.40468 1.08668 0.92467 0.96840 1.27304 0.93805 1.08739 0.91419 1.70998 1.43520 1.09466 1.32746 0.83704 0.79523 0.70307 0.76719 1.21848 1.17821 1.15915 1.21404 0.91397 0.94761 0.94818 1.23453 1.01829 0.94230 0.96574 1.72750 1.05448 1.31298 1.00340 1.73569 1.08180 1.08551 1.20491 1.20832 0.99310 0.92557 0.95763 1.21053 0.96734 0.96002 0.98236 1.21532 0.97534 0.92836 0.97846 1.21575 0.94615 1.02170 0.92526 1.21332 0.98837 0.92123 1.00974 1.19113 0.98811 0.97427 0.94939 0.92156 0.93801 0.92494 0.93953 0.82279 0.82404 0.80132 0.80899 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.73 8.78 71.98 0.63 -5.09 16 2 C 0.05 2.16 1.99 -12.29 -0.02 2.14 16 3 H 0.06 2.25 4.46 -2.39 -0.01 2.24 16 4 C -0.60 -32.53 8.56 25.60 0.22 -32.31 16 5 H 0.01 0.82 7.80 -2.91 -0.02 0.80 16 6 C -0.01 -0.78 5.29 84.66 0.45 -0.33 16 7 N -0.93 -56.84 13.69 21.45 0.29 -56.55 16 8 Si 1.08 45.52 26.29 68.60 1.80 47.32 16 9 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.25 -9.53 7.11 99.48 0.71 -8.83 16 11 H -0.24 -8.55 5.76 99.48 0.57 -7.97 16 12 C -0.01 -0.50 4.77 -19.61 -0.09 -0.60 16 13 C -0.01 -0.37 9.88 84.21 0.83 0.46 16 14 N -0.25 -10.82 11.48 -58.11 -0.67 -11.49 16 15 N -0.25 -10.35 11.56 -51.99 -0.60 -10.95 16 16 C 0.04 1.58 6.69 40.34 0.27 1.85 16 17 C -0.10 -2.49 10.01 22.32 0.22 -2.27 16 18 C -0.08 -1.38 9.94 22.06 0.22 -1.17 16 19 C -0.09 -1.78 9.96 22.08 0.22 -1.56 16 20 C -0.11 -3.33 9.43 22.28 0.21 -3.12 16 21 C -0.09 -3.53 5.75 -21.27 -0.12 -3.65 16 22 H 0.06 2.41 4.89 -2.38 -0.01 2.40 16 23 H 0.04 1.75 7.27 -2.38 -0.02 1.73 16 24 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.25 15.76 8.73 -92.71 -0.81 14.95 16 26 H 0.16 7.04 7.59 -2.92 -0.02 7.02 16 27 H 0.16 3.19 8.06 -2.91 -0.02 3.17 16 28 H 0.18 1.50 8.06 -2.92 -0.02 1.47 16 29 H 0.17 1.97 8.06 -2.91 -0.02 1.95 16 30 H 0.14 4.00 6.14 -2.91 -0.02 3.99 16 Total: -1.00 -69.44 253.25 4.85 -64.60 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.99 Total: 12.71 kcal Atomic # 6 Polarization: -48.68 SS G_CDS: 3.03 Total: -45.65 kcal Atomic # 7 Polarization: -78.01 SS G_CDS: -0.97 Total: -78.99 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 1.80 Total: 47.32 kcal Total: -69.44 4.85 -64.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261239001.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.350 kcal (2) G-P(sol) polarization free energy of solvation -69.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds