Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47791 * 2 1 4 4 C 1.50702 * 109.47197 * 239.99722 * 2 1 3 5 5 H 1.08001 * 120.00101 * 240.00481 * 4 2 1 6 6 C 1.37880 * 119.99778 * 60.00314 * 4 2 1 7 7 N 1.31512 * 120.00077 * 359.97438 * 6 4 2 8 8 Si 1.86804 * 119.99627 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47146 * 60.00151 * 8 6 4 10 10 H 1.48509 * 109.46640 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47142 * 299.99788 * 8 6 4 12 12 N 1.46504 * 109.47194 * 119.99980 * 2 1 3 13 13 N 1.40097 * 119.99839 * 270.00335 * 12 2 1 14 14 C 1.28014 * 119.99570 * 174.56683 * 13 12 2 15 15 C 1.50654 * 119.84318 * 352.61229 * 14 13 12 16 16 C 1.53687 * 109.15896 * 117.48283 * 15 14 13 17 17 S 1.81621 * 108.98143 * 57.98059 * 16 15 14 18 18 C 1.81630 * 102.56285 * 303.38793 * 17 16 15 19 19 C 1.50658 * 119.83393 * 172.87908 * 14 13 12 20 20 H 1.09005 * 109.47657 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.47242 * 300.00266 * 1 2 3 22 22 H 1.09006 * 109.46890 * 60.00080 * 1 2 3 23 23 H 0.97003 * 119.99922 * 180.02562 * 7 6 4 24 24 H 0.97002 * 119.99829 * 89.99290 * 12 2 1 25 25 H 1.09002 * 109.47618 * 237.48601 * 15 14 13 26 26 H 1.09003 * 109.47367 * 357.50431 * 15 14 13 27 27 H 1.09005 * 109.66829 * 298.07227 * 16 15 14 28 28 H 1.08999 * 109.54334 * 177.81947 * 16 15 14 29 29 H 1.08994 * 109.54130 * 296.62635 * 18 17 16 30 30 H 1.08997 * 109.61214 * 176.39955 * 18 17 16 31 31 H 1.09000 * 109.48406 * 2.49421 * 19 14 13 32 32 H 1.08998 * 109.47781 * 122.50414 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6531 -1.5886 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.8281 -2.5199 -4.0081 10 1 1.8269 -0.4200 -5.2205 11 1 3.8075 -1.1191 -4.0076 12 7 2.0183 -0.6906 1.1962 13 7 2.2517 0.0299 2.3748 14 6 2.5780 -0.5869 3.4480 15 6 2.5482 -2.0927 3.4859 16 6 3.9689 -2.6190 3.7440 17 16 4.5811 -1.9251 5.3068 18 6 4.4353 -0.1362 5.0288 19 6 2.9843 0.1968 4.6689 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8901 23 1 0.7082 1.1608 -3.4845 24 1 2.1799 -1.6468 1.1722 25 1 1.8846 -2.4230 4.2850 26 1 2.1850 -2.4731 2.5311 27 1 4.6260 -2.3164 2.9285 28 1 3.9482 -3.7067 3.8112 29 1 5.0912 0.1602 4.2103 30 1 4.7183 0.3992 5.9351 31 1 2.8967 1.2634 4.4620 32 1 2.3334 -0.0662 5.5027 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306543892.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = 32.492373 kcal Electronic energy + Delta-G solvation = -13842.698357 eV Core-core repulsion = 11544.031991 eV Total energy + Delta-G solvation = -2298.666366 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 228.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -37.91955 -35.00880 -32.89939 -31.65307 -30.67421 -27.29883 -25.26838 -24.17882 -23.28104 -20.43655 -18.81658 -17.42781 -16.21307 -15.49496 -15.14437 -14.61444 -14.05806 -13.82013 -13.59029 -13.05896 -12.72472 -12.65085 -12.18129 -11.96737 -11.49095 -11.36515 -11.02385 -10.84654 -10.79094 -10.47175 -10.24847 -10.11150 -9.71850 -9.36001 -8.98303 -8.53199 -7.69690 -6.92120 -6.15539 -4.23712 1.81983 2.56168 2.79082 3.23694 3.28593 3.30133 3.85516 4.35210 4.76913 4.94813 5.11124 5.16802 5.17260 5.30413 5.41731 5.45530 5.70034 5.87457 5.95101 6.05369 6.45249 6.72902 6.96692 6.99006 7.14280 7.55880 7.76910 7.84447 8.15483 8.30523 8.84185 9.36031 9.43317 10.90526 Molecular weight = 228.10amu Principal moments of inertia in cm(-1) A = 0.042823 B = 0.005918 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.694036 B = 4730.412188 C = 5059.633012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.298 3.702 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.634 5.634 13 N -0.197 5.197 14 C -0.026 4.026 15 C -0.102 4.102 16 C -0.070 4.070 17 S -0.274 6.274 18 C -0.072 4.072 19 C -0.043 4.043 20 H 0.024 0.976 21 H 0.011 0.989 22 H 0.089 0.911 23 H 0.265 0.735 24 H 0.368 0.632 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -3.831 12.244 13.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.195 3.805 3 H 0.058 0.942 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.202 1.202 12 N -0.373 5.373 13 N -0.007 5.007 14 C -0.220 4.220 15 C -0.144 4.144 16 C -0.220 4.220 17 S -0.049 6.049 18 C -0.221 4.221 19 C -0.084 4.084 20 H 0.044 0.956 21 H 0.030 0.970 22 H 0.108 0.892 23 H 0.075 0.925 24 H 0.207 0.793 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.102 0.898 30 H 0.124 0.876 31 H 0.104 0.896 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.182 -3.213 12.419 13.493 hybrid contribution -0.045 -1.083 -1.809 2.109 sum 4.137 -4.296 10.610 12.172 Atomic orbital electron populations 1.22222 0.99298 0.99069 1.00446 1.18483 0.89925 0.93534 0.78509 0.94196 1.21176 1.32251 1.13245 0.90254 0.92386 1.24855 0.94825 0.94995 0.98925 1.69879 1.35963 1.22529 1.24007 0.86495 0.79188 0.79605 0.81746 1.20184 1.21036 1.20181 1.49082 1.74325 1.08043 1.05887 1.73528 1.04540 1.28570 0.94076 1.23893 1.10456 0.92686 0.94956 1.21129 0.95728 0.94366 1.03166 1.23404 0.99032 1.02805 0.96714 1.86532 1.85823 1.06633 1.25874 1.23394 1.00032 0.93429 1.05273 1.20234 0.93872 1.00015 0.94261 0.95643 0.97035 0.89200 0.92507 0.79316 0.89809 0.90445 0.89872 0.87977 0.89764 0.87586 0.89622 0.90058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.74 9.29 37.15 0.35 -3.40 16 2 C 0.30 7.62 3.23 -69.08 -0.22 7.40 16 3 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 4 C -0.53 -14.27 8.74 -34.44 -0.30 -14.57 16 5 H 0.06 1.53 7.79 -52.49 -0.41 1.12 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.89 -24.72 11.32 55.43 0.63 -24.09 16 8 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.63 -13.99 5.90 -5.88 -0.03 -14.03 16 13 N -0.20 -3.98 11.38 35.58 0.40 -3.57 16 14 C -0.03 -0.43 6.18 -78.95 -0.49 -0.92 16 15 C -0.10 -1.45 5.75 -27.55 -0.16 -1.61 16 16 C -0.07 -0.89 6.50 37.51 0.24 -0.65 16 17 S -0.27 -3.43 22.23 -107.50 -2.39 -5.82 16 18 C -0.07 -0.83 6.48 37.24 0.24 -0.59 16 19 C -0.04 -0.55 5.99 -27.82 -0.17 -0.72 16 20 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 21 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.37 7.58 6.12 -182.60 -1.12 6.46 16 25 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.08 1.18 5.54 -51.93 -0.29 0.89 16 27 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 274.35 15.07 4.13 4.13 Total: -1.00 -28.08 274.35 -8.37 -36.45 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.49 Total: 4.51 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -0.60 Total: -13.33 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 1.00 Total: -41.69 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: -3.43 SS G_CDS: -2.39 Total: -5.82 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -28.08 -8.37 -36.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306543892.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.946 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds